Wall clock time and date at job start Mon Mar 30 2020 07:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.46951 * 2 1 4 4 H 1.09004 * 109.47223 * 181.93208 * 3 2 1 5 5 C 1.50699 * 109.47216 * 61.93391 * 3 2 1 6 6 H 1.07998 * 120.00032 * 244.24025 * 5 3 2 7 7 C 1.37878 * 120.00073 * 64.24573 * 5 3 2 8 8 N 1.31516 * 119.99894 * 9.28397 * 7 5 3 9 9 Si 1.86798 * 120.00186 * 189.28884 * 7 5 3 10 10 H 1.48495 * 109.47450 * 89.99647 * 9 7 5 11 11 H 1.48504 * 109.46961 * 329.99263 * 9 7 5 12 12 H 1.48497 * 109.47139 * 210.00023 * 9 7 5 13 13 N 1.46896 * 109.47464 * 301.93506 * 3 2 1 14 14 C 1.46898 * 111.00229 * 174.17791 * 13 3 2 15 15 C 1.46911 * 110.99852 * 298.12851 * 13 3 2 16 16 C 1.53000 * 109.47023 * 167.24013 * 15 13 3 17 17 H 1.08995 * 109.61285 * 55.36300 * 16 15 13 18 18 C 1.53297 * 109.61832 * 294.99986 * 16 15 13 19 19 C 1.52873 * 108.59058 * 165.82903 * 18 16 15 20 20 C 1.52075 * 110.51056 * 54.89081 * 19 18 16 21 21 H 1.09003 * 114.63992 * 193.15688 * 20 19 18 22 22 C 1.52305 * 119.84186 * 49.55127 * 20 19 18 23 23 C 1.52074 * 120.02322 * 338.29820 * 20 19 18 24 24 H 1.08995 * 117.25419 * 215.56895 * 23 20 19 25 25 C 1.52709 * 120.51967 * 5.29379 * 23 20 19 26 26 H 1.08997 * 109.47166 * 64.51132 * 1 2 3 27 27 H 1.09007 * 109.46943 * 184.51426 * 1 2 3 28 28 H 1.09003 * 109.47141 * 304.50853 * 1 2 3 29 29 H 1.08996 * 109.47190 * 239.99794 * 2 1 3 30 30 H 1.09004 * 109.46891 * 120.00262 * 2 1 3 31 31 H 0.96997 * 120.00351 * 3.52208 * 8 7 5 32 32 H 1.08995 * 109.47329 * 60.00072 * 14 13 3 33 33 H 1.09001 * 109.47153 * 179.97438 * 14 13 3 34 34 H 1.09001 * 109.46477 * 299.99427 * 14 13 3 35 35 H 1.08999 * 109.46899 * 287.24296 * 15 13 3 36 36 H 1.09004 * 109.46452 * 47.23769 * 15 13 3 37 37 H 1.09002 * 109.61538 * 285.56230 * 18 16 15 38 38 H 1.08999 * 109.62248 * 45.91715 * 18 16 15 39 39 H 1.08998 * 109.26961 * 175.15310 * 19 18 16 40 40 H 1.08995 * 109.27155 * 294.62277 * 19 18 16 41 41 H 1.08997 * 117.53777 * 357.55771 * 22 20 19 42 42 H 1.09007 * 117.53830 * 142.80421 * 22 20 19 43 43 H 1.08998 * 109.35728 * 218.32110 * 25 23 20 44 44 H 1.08996 * 109.35787 * 98.73716 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1295 1.4427 -0.0346 5 6 1.5772 2.1389 1.2537 6 1 0.8984 2.9763 1.1871 7 6 2.0204 1.7071 2.4859 8 7 2.9820 0.8131 2.5625 9 14 1.2552 2.3918 4.0463 10 1 0.0999 1.5474 4.4429 11 1 0.7919 3.7814 3.8019 12 1 2.2655 2.3912 5.1346 13 7 1.5126 2.1484 -1.1753 14 6 1.8678 3.5732 -1.1370 15 6 1.9806 1.5225 -2.4193 16 6 1.1748 2.0687 -3.5996 17 1 1.2416 3.1564 -3.6160 18 6 -0.2920 1.6450 -3.4614 19 6 -1.1329 2.4770 -4.4298 20 6 -0.5957 2.3498 -5.8468 21 1 -0.9944 3.0799 -6.5512 22 6 -0.3125 0.9712 -6.4291 23 6 0.8444 1.9198 -6.0788 24 1 1.3706 2.3706 -6.9202 25 6 1.7261 1.4968 -4.9059 26 1 -0.3633 0.4422 -0.9276 27 1 -0.3633 -1.0246 0.0809 28 1 -0.3633 0.5822 0.8469 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5139 0.8900 31 1 3.4144 0.4954 1.7545 32 1 2.9527 3.6771 -1.1248 33 1 1.4654 4.0719 -2.0188 34 1 1.4490 4.0279 -0.2392 35 1 3.0369 1.7487 -2.5647 36 1 1.8457 0.4427 -2.3557 37 1 -0.3919 0.5874 -3.7055 38 1 -0.6282 1.8178 -2.4391 39 1 -2.1645 2.1260 -4.4034 40 1 -1.1017 3.5232 -4.1258 41 1 -0.4705 0.1086 -5.7818 42 1 -0.5340 0.8149 -7.4849 43 1 2.7390 1.8673 -5.0633 44 1 1.7471 0.4088 -4.8436 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000403718607.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:02 Heat of formation + Delta-G solvation = 4.703436 kcal Electronic energy + Delta-G solvation = -19856.882619 eV Core-core repulsion = 17194.898182 eV Total energy + Delta-G solvation = -2661.984437 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.66395 -37.37848 -34.08312 -32.18596 -31.02090 -30.74637 -26.83437 -25.97900 -24.44412 -23.62862 -22.54623 -21.12318 -20.55294 -18.95260 -18.31497 -16.55105 -16.17916 -15.10309 -14.49549 -14.17503 -13.87843 -13.76342 -13.67383 -13.28988 -12.96354 -12.42138 -12.21941 -12.02364 -11.87523 -11.63129 -11.49432 -11.18909 -10.92505 -10.78888 -10.72505 -10.49161 -10.39496 -10.21479 -10.09038 -9.99479 -9.70862 -9.63927 -9.53343 -9.45307 -8.39484 -8.31029 -7.17104 -6.30206 -3.99286 3.46452 3.48179 3.64129 3.74957 4.53579 4.63979 4.79033 4.88379 4.95214 5.19397 5.23560 5.39450 5.42523 5.52371 5.62898 5.75637 5.80694 5.86357 5.96711 6.00766 6.08192 6.11532 6.17732 6.22295 6.32456 6.35218 6.37870 6.40250 6.45915 6.51674 6.58420 6.73421 6.79136 6.86817 6.99965 7.14565 7.24712 7.43667 7.55304 7.93868 8.10602 8.45221 8.65266 8.92231 9.69427 11.05793 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.037898 B = 0.005289 C = 0.005266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.642998 B = 5292.703381 C = 5316.265272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.112 4.112 3 C 0.204 3.796 4 H -0.015 1.015 5 C -0.579 4.579 6 H 0.057 0.943 7 C 0.021 3.979 8 N -0.913 5.913 9 Si 1.066 2.934 10 H -0.288 1.288 11 H -0.290 1.290 12 H -0.288 1.288 13 N -0.523 5.523 14 C 0.039 3.961 15 C 0.053 3.947 16 C -0.078 4.078 17 H 0.069 0.931 18 C -0.110 4.110 19 C -0.088 4.088 20 C -0.136 4.136 21 H 0.091 0.909 22 C -0.188 4.188 23 C -0.144 4.144 24 H 0.095 0.905 25 C -0.084 4.084 26 H 0.049 0.951 27 H 0.017 0.983 28 H 0.062 0.938 29 H 0.021 0.979 30 H 0.063 0.937 31 H 0.269 0.731 32 H 0.007 0.993 33 H 0.044 0.956 34 H 0.075 0.925 35 H 0.017 0.983 36 H 0.070 0.930 37 H 0.052 0.948 38 H 0.088 0.912 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.094 0.906 42 H 0.086 0.914 43 H 0.060 0.940 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.253 1.764 -14.705 15.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.151 4.151 3 C 0.098 3.902 4 H 0.003 0.997 5 C -0.617 4.617 6 H 0.075 0.925 7 C -0.183 4.183 8 N -0.550 5.550 9 Si 0.895 3.105 10 H -0.215 1.215 11 H -0.216 1.216 12 H -0.214 1.214 13 N -0.247 5.247 14 C -0.109 4.109 15 C -0.076 4.076 16 C -0.097 4.097 17 H 0.088 0.912 18 C -0.147 4.147 19 C -0.125 4.125 20 C -0.154 4.154 21 H 0.109 0.891 22 C -0.225 4.225 23 C -0.162 4.162 24 H 0.114 0.886 25 C -0.122 4.122 26 H 0.068 0.932 27 H 0.036 0.964 28 H 0.081 0.919 29 H 0.039 0.961 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.026 0.974 33 H 0.062 0.938 34 H 0.094 0.906 35 H 0.035 0.965 36 H 0.089 0.911 37 H 0.071 0.929 38 H 0.106 0.894 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.113 0.887 42 H 0.105 0.895 43 H 0.079 0.921 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.730 1.609 -13.023 14.319 hybrid contribution 0.969 0.120 -1.864 2.104 sum -4.762 1.730 -14.887 15.725 Atomic orbital electron populations 1.21479 0.96331 0.97888 1.02200 1.21592 0.96436 0.98278 0.98758 1.19366 0.91802 0.90840 0.88213 0.99711 1.21867 1.30726 1.17999 0.91116 0.92484 1.25678 0.95499 0.95623 1.01505 1.70756 1.21921 1.29679 1.32614 0.83590 0.75856 0.75566 0.75515 1.21459 1.21570 1.21360 1.61964 1.59399 1.01934 1.01395 1.22211 0.97222 0.90337 1.01144 1.22165 0.95173 0.99574 0.90647 1.21149 0.95474 1.00216 0.92843 0.91248 1.21595 0.94272 0.98467 1.00355 1.20868 0.98857 1.00759 0.92057 1.21834 0.97700 0.97638 0.98269 0.89084 1.23128 1.04445 0.94219 1.00748 1.22192 0.90198 1.03720 1.00114 0.88650 1.21069 0.97730 1.00397 0.93015 0.93239 0.96403 0.91927 0.96082 0.91892 0.91985 0.97436 0.93768 0.90598 0.96507 0.91141 0.92896 0.89368 0.92051 0.91708 0.88742 0.89532 0.92128 0.91845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.60 9.52 37.16 0.35 -2.24 16 2 C -0.11 -2.60 5.07 -26.73 -0.14 -2.73 16 3 C 0.20 5.00 1.39 -68.87 -0.10 4.90 16 4 H -0.01 -0.40 7.46 -51.93 -0.39 -0.79 16 5 C -0.58 -15.49 6.52 -34.44 -0.22 -15.72 16 6 H 0.06 1.55 6.46 -52.49 -0.34 1.21 16 7 C 0.02 0.58 5.18 -17.82 -0.09 0.49 16 8 N -0.91 -26.89 12.85 55.43 0.71 -26.18 16 9 Si 1.07 24.95 29.91 -169.99 -5.09 19.87 16 10 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 13 N -0.52 -10.80 3.12 -236.28 -0.74 -11.54 16 14 C 0.04 0.78 9.04 60.06 0.54 1.32 16 15 C 0.05 0.94 4.23 -3.82 -0.02 0.93 16 16 C -0.08 -1.14 2.13 -90.53 -0.19 -1.34 16 17 H 0.07 1.06 6.30 -51.93 -0.33 0.74 16 18 C -0.11 -1.57 4.94 -26.64 -0.13 -1.70 16 19 C -0.09 -1.08 5.93 -27.27 -0.16 -1.24 16 20 C -0.14 -1.53 6.00 -91.92 -0.55 -2.08 16 21 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 22 C -0.19 -2.02 9.66 -26.75 -0.26 -2.28 16 23 C -0.14 -1.64 6.19 -90.90 -0.56 -2.20 16 24 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 25 C -0.08 -1.07 5.12 -26.94 -0.14 -1.21 16 26 H 0.05 0.98 6.36 -51.93 -0.33 0.65 16 27 H 0.02 0.33 8.14 -51.92 -0.42 -0.09 16 28 H 0.06 1.46 7.13 -51.93 -0.37 1.09 16 29 H 0.02 0.44 6.29 -51.93 -0.33 0.12 16 30 H 0.06 1.62 6.38 -51.93 -0.33 1.29 16 31 H 0.27 7.96 6.24 -40.82 -0.25 7.70 16 32 H 0.01 0.15 8.14 -51.93 -0.42 -0.28 16 33 H 0.04 0.76 6.34 -51.93 -0.33 0.43 16 34 H 0.08 1.62 6.21 -51.93 -0.32 1.30 16 35 H 0.02 0.31 8.09 -51.93 -0.42 -0.11 16 36 H 0.07 1.29 5.84 -51.93 -0.30 0.99 16 37 H 0.05 0.75 7.11 -51.93 -0.37 0.38 16 38 H 0.09 1.47 6.21 -51.93 -0.32 1.14 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.09 1.07 7.26 -51.93 -0.38 0.69 16 42 H 0.09 0.81 8.14 -51.92 -0.42 0.39 16 43 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.06 0.81 8.06 -51.93 -0.42 0.39 16 LS Contribution 320.98 15.07 4.84 4.84 Total: -1.00 -27.79 320.98 -9.64 -37.43 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -7.71 Total: 0.69 kcal Atomic # 6 Polarization: -23.44 SS G_CDS: -1.66 Total: -25.10 kcal Atomic # 7 Polarization: -37.69 SS G_CDS: -0.03 Total: -37.72 kcal Atomic # 14 Polarization: 24.95 SS G_CDS: -5.09 Total: 19.87 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -27.79 -9.64 -37.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403718607.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.135 kcal (2) G-P(sol) polarization free energy of solvation -27.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds