Wall clock time and date at job start Mon Mar 30 2020 07:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.46951 * 2 1 4 4 H 1.09004 * 109.47223 * 181.93208 * 3 2 1 5 5 C 1.50699 * 109.47216 * 61.93391 * 3 2 1 6 6 H 1.07998 * 120.00032 * 244.24025 * 5 3 2 7 7 C 1.37878 * 120.00073 * 64.24573 * 5 3 2 8 8 N 1.31516 * 119.99894 * 9.28397 * 7 5 3 9 9 Si 1.86798 * 120.00186 * 189.28884 * 7 5 3 10 10 H 1.48495 * 109.47450 * 89.99647 * 9 7 5 11 11 H 1.48504 * 109.46961 * 329.99263 * 9 7 5 12 12 H 1.48497 * 109.47139 * 210.00023 * 9 7 5 13 13 N 1.46896 * 109.47464 * 301.93506 * 3 2 1 14 14 C 1.46898 * 111.00229 * 174.17791 * 13 3 2 15 15 C 1.46911 * 110.99852 * 298.12851 * 13 3 2 16 16 C 1.53000 * 109.47023 * 167.24013 * 15 13 3 17 17 H 1.08995 * 109.61285 * 55.36300 * 16 15 13 18 18 C 1.53297 * 109.61832 * 294.99986 * 16 15 13 19 19 C 1.52873 * 108.59058 * 165.82903 * 18 16 15 20 20 C 1.52075 * 110.51056 * 54.89081 * 19 18 16 21 21 H 1.09003 * 114.63992 * 193.15688 * 20 19 18 22 22 C 1.52305 * 119.84186 * 49.55127 * 20 19 18 23 23 C 1.52074 * 120.02322 * 338.29820 * 20 19 18 24 24 H 1.08995 * 117.25419 * 215.56895 * 23 20 19 25 25 C 1.52709 * 120.51967 * 5.29379 * 23 20 19 26 26 H 1.08997 * 109.47166 * 64.51132 * 1 2 3 27 27 H 1.09007 * 109.46943 * 184.51426 * 1 2 3 28 28 H 1.09003 * 109.47141 * 304.50853 * 1 2 3 29 29 H 1.08996 * 109.47190 * 239.99794 * 2 1 3 30 30 H 1.09004 * 109.46891 * 120.00262 * 2 1 3 31 31 H 0.96997 * 120.00351 * 3.52208 * 8 7 5 32 32 H 1.08995 * 109.47329 * 60.00072 * 14 13 3 33 33 H 1.09001 * 109.47153 * 179.97438 * 14 13 3 34 34 H 1.09001 * 109.46477 * 299.99427 * 14 13 3 35 35 H 1.08999 * 109.46899 * 287.24296 * 15 13 3 36 36 H 1.09004 * 109.46452 * 47.23769 * 15 13 3 37 37 H 1.09002 * 109.61538 * 285.56230 * 18 16 15 38 38 H 1.08999 * 109.62248 * 45.91715 * 18 16 15 39 39 H 1.08998 * 109.26961 * 175.15310 * 19 18 16 40 40 H 1.08995 * 109.27155 * 294.62277 * 19 18 16 41 41 H 1.08997 * 117.53777 * 357.55771 * 22 20 19 42 42 H 1.09007 * 117.53830 * 142.80421 * 22 20 19 43 43 H 1.08998 * 109.35728 * 218.32110 * 25 23 20 44 44 H 1.08996 * 109.35787 * 98.73716 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1295 1.4427 -0.0346 5 6 1.5772 2.1389 1.2537 6 1 0.8984 2.9763 1.1871 7 6 2.0204 1.7071 2.4859 8 7 2.9820 0.8131 2.5625 9 14 1.2552 2.3918 4.0463 10 1 0.0999 1.5474 4.4429 11 1 0.7919 3.7814 3.8019 12 1 2.2655 2.3912 5.1346 13 7 1.5126 2.1484 -1.1753 14 6 1.8678 3.5732 -1.1370 15 6 1.9806 1.5225 -2.4193 16 6 1.1748 2.0687 -3.5996 17 1 1.2416 3.1564 -3.6160 18 6 -0.2920 1.6450 -3.4614 19 6 -1.1329 2.4770 -4.4298 20 6 -0.5957 2.3498 -5.8468 21 1 -0.9944 3.0799 -6.5512 22 6 -0.3125 0.9712 -6.4291 23 6 0.8444 1.9198 -6.0788 24 1 1.3706 2.3706 -6.9202 25 6 1.7261 1.4968 -4.9059 26 1 -0.3633 0.4422 -0.9276 27 1 -0.3633 -1.0246 0.0809 28 1 -0.3633 0.5822 0.8469 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5139 0.8900 31 1 3.4144 0.4954 1.7545 32 1 2.9527 3.6771 -1.1248 33 1 1.4654 4.0719 -2.0188 34 1 1.4490 4.0279 -0.2392 35 1 3.0369 1.7487 -2.5647 36 1 1.8457 0.4427 -2.3557 37 1 -0.3919 0.5874 -3.7055 38 1 -0.6282 1.8178 -2.4391 39 1 -2.1645 2.1260 -4.4034 40 1 -1.1017 3.5232 -4.1258 41 1 -0.4705 0.1086 -5.7818 42 1 -0.5340 0.8149 -7.4849 43 1 2.7390 1.8673 -5.0633 44 1 1.7471 0.4088 -4.8436 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403718607.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:01 Heat of formation + Delta-G solvation = -8.405756 kcal Electronic energy + Delta-G solvation = -19857.451076 eV Core-core repulsion = 17194.898182 eV Total energy + Delta-G solvation = -2662.552894 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.74920 -39.01088 -35.71486 -33.71971 -32.84948 -31.84517 -28.41890 -27.76824 -25.98733 -24.97712 -24.20901 -22.04915 -21.98750 -20.70191 -19.38142 -18.54880 -17.11567 -16.83505 -16.02436 -15.80476 -15.51832 -15.23009 -14.76504 -14.67352 -14.38080 -13.91042 -13.83680 -13.47232 -13.24359 -13.06744 -12.89281 -12.69404 -12.64069 -12.41317 -12.16447 -11.98055 -11.93957 -11.80793 -11.56681 -11.54648 -11.38405 -10.97961 -10.57550 -10.48602 -10.43109 -10.35391 -8.94882 -8.52191 -6.21113 1.55258 1.62601 1.79474 2.59735 2.88058 3.22744 3.31974 3.69605 3.90629 3.94133 4.12197 4.15983 4.30490 4.37565 4.44834 4.46594 4.54094 4.59108 4.63577 4.71769 4.77104 4.83157 4.87647 4.89187 4.91456 5.00240 5.05346 5.10420 5.13774 5.24571 5.28486 5.32290 5.37305 5.42844 5.44361 5.52638 5.59570 5.60910 5.76754 5.99809 6.12655 6.50973 6.58619 6.81216 7.55500 8.83641 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.037898 B = 0.005289 C = 0.005266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.642998 B = 5292.703381 C = 5316.265272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.106 4.106 3 C 0.208 3.792 4 H -0.055 1.055 5 C -0.577 4.577 6 H 0.052 0.948 7 C -0.027 4.027 8 N -0.938 5.938 9 Si 1.109 2.891 10 H -0.276 1.276 11 H -0.272 1.272 12 H -0.290 1.290 13 N -0.520 5.520 14 C 0.044 3.956 15 C 0.055 3.945 16 C -0.068 4.068 17 H 0.067 0.933 18 C -0.105 4.105 19 C -0.085 4.085 20 C -0.139 4.139 21 H 0.107 0.893 22 C -0.182 4.182 23 C -0.150 4.150 24 H 0.110 0.890 25 C -0.081 4.081 26 H 0.063 0.937 27 H 0.038 0.962 28 H 0.039 0.961 29 H 0.037 0.963 30 H 0.032 0.968 31 H 0.255 0.745 32 H -0.004 1.004 33 H 0.076 0.924 34 H 0.057 0.943 35 H 0.009 0.991 36 H 0.064 0.936 37 H 0.053 0.947 38 H 0.064 0.936 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.087 0.913 42 H 0.104 0.896 43 H 0.064 0.936 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.810 2.278 -16.496 17.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.144 4.144 3 C 0.100 3.900 4 H -0.038 1.038 5 C -0.616 4.616 6 H 0.070 0.930 7 C -0.225 4.225 8 N -0.576 5.576 9 Si 0.933 3.067 10 H -0.202 1.202 11 H -0.197 1.197 12 H -0.216 1.216 13 N -0.244 5.244 14 C -0.105 4.105 15 C -0.073 4.073 16 C -0.087 4.087 17 H 0.085 0.915 18 C -0.143 4.143 19 C -0.122 4.122 20 C -0.157 4.157 21 H 0.125 0.875 22 C -0.219 4.219 23 C -0.168 4.168 24 H 0.128 0.872 25 C -0.119 4.119 26 H 0.082 0.918 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.051 0.949 31 H 0.065 0.935 32 H 0.014 0.986 33 H 0.094 0.906 34 H 0.076 0.924 35 H 0.027 0.973 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.082 0.918 41 H 0.105 0.895 42 H 0.122 0.878 43 H 0.082 0.918 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.299 2.130 -14.845 16.679 hybrid contribution 1.481 -0.037 -1.369 2.018 sum -5.818 2.093 -16.214 17.353 Atomic orbital electron populations 1.21359 0.94557 0.98970 1.01868 1.21465 0.97830 0.97094 0.98037 1.19210 0.89428 0.92032 0.89292 1.03762 1.22088 1.29751 1.17584 0.92137 0.92999 1.26966 0.95307 0.95412 1.04845 1.70875 1.23467 1.31452 1.31850 0.83022 0.75403 0.76068 0.72254 1.20182 1.19713 1.21618 1.61950 1.58944 1.02204 1.01285 1.22183 0.96504 0.89982 1.01790 1.22230 0.95351 0.99194 0.90496 1.21051 0.95389 0.99864 0.92385 0.91500 1.21505 0.94135 0.98995 0.99642 1.20821 0.98951 1.00219 0.92237 1.21869 0.97455 0.98523 0.97824 0.87498 1.23175 1.03475 0.93635 1.01620 1.22200 0.90234 1.04487 0.99871 0.87212 1.21017 0.98273 1.00208 0.92415 0.91833 0.94272 0.94190 0.94456 0.94914 0.93474 0.98575 0.90566 0.92382 0.97304 0.91720 0.92836 0.91781 0.91183 0.91767 0.89461 0.87809 0.91770 0.92010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.64 9.52 71.98 0.69 -3.95 16 2 C -0.11 -4.98 5.07 30.59 0.16 -4.82 16 3 C 0.21 10.44 1.39 44.17 0.06 10.50 16 4 H -0.05 -3.16 7.46 -2.38 -0.02 -3.17 16 5 C -0.58 -31.50 6.52 25.60 0.17 -31.33 16 6 H 0.05 2.85 6.46 -2.91 -0.02 2.83 16 7 C -0.03 -1.53 5.18 84.65 0.44 -1.09 16 8 N -0.94 -56.89 12.85 21.45 0.28 -56.62 16 9 Si 1.11 50.42 29.91 68.60 2.05 52.47 16 10 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 11 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 12 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 13 N -0.52 -21.57 3.12 -901.46 -2.81 -24.39 16 14 C 0.04 1.73 9.04 127.69 1.15 2.89 16 15 C 0.06 1.96 4.23 86.30 0.36 2.32 16 16 C -0.07 -1.89 2.13 -10.73 -0.02 -1.91 16 17 H 0.07 1.91 6.30 -2.39 -0.02 1.89 16 18 C -0.11 -2.83 4.94 30.65 0.15 -2.67 16 19 C -0.09 -1.86 5.93 30.25 0.18 -1.69 16 20 C -0.14 -2.66 6.00 -11.63 -0.07 -2.73 16 21 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 22 C -0.18 -3.32 9.66 30.58 0.30 -3.03 16 23 C -0.15 -2.95 6.19 -10.98 -0.07 -3.02 16 24 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 25 C -0.08 -1.89 5.12 30.46 0.16 -1.74 16 26 H 0.06 2.46 6.36 -2.39 -0.02 2.45 16 27 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 28 H 0.04 1.84 7.13 -2.39 -0.02 1.82 16 29 H 0.04 1.60 6.29 -2.39 -0.02 1.58 16 30 H 0.03 1.72 6.38 -2.38 -0.02 1.71 16 31 H 0.26 15.80 6.24 -92.71 -0.58 15.23 16 32 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 33 H 0.08 2.51 6.34 -2.39 -0.02 2.49 16 34 H 0.06 2.49 6.21 -2.39 -0.01 2.48 16 35 H 0.01 0.32 8.09 -2.39 -0.02 0.30 16 36 H 0.06 2.35 5.84 -2.38 -0.01 2.33 16 37 H 0.05 1.42 7.11 -2.39 -0.02 1.40 16 38 H 0.06 2.04 6.21 -2.39 -0.01 2.03 16 39 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.09 1.73 7.26 -2.39 -0.02 1.72 16 42 H 0.10 1.55 8.14 -2.38 -0.02 1.53 16 43 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.06 1.46 8.06 -2.39 -0.02 1.44 16 Total: -1.00 -60.55 320.98 4.30 -56.25 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: 1.14 Total: 14.56 kcal Atomic # 6 Polarization: -45.93 SS G_CDS: 3.65 Total: -42.28 kcal Atomic # 7 Polarization: -78.47 SS G_CDS: -2.54 Total: -81.00 kcal Atomic # 14 Polarization: 50.42 SS G_CDS: 2.05 Total: 52.47 kcal Total: -60.55 4.30 -56.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403718607.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.842 kcal (2) G-P(sol) polarization free energy of solvation -60.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds