Wall clock time and date at job start Mon Mar 30 2020 07:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47755 * 2 1 4 4 H 1.08997 * 109.46725 * 54.47136 * 3 2 1 5 5 N 1.46901 * 109.46982 * 294.47505 * 3 2 1 6 6 C 1.46897 * 111.00122 * 102.40403 * 5 3 2 7 7 H 1.09000 * 110.43484 * 325.34217 * 6 5 3 8 8 C 1.54267 * 110.48579 * 87.88442 * 6 5 3 9 9 C 1.54091 * 106.49435 * 142.19868 * 8 6 5 10 10 C 1.54273 * 106.61678 * 0.17101 * 9 8 6 11 11 H 1.09000 * 110.48538 * 94.96511 * 10 9 8 12 12 C 1.50703 * 110.59582 * 217.54509 * 10 9 8 13 13 H 1.08004 * 119.99842 * 114.83991 * 12 10 9 14 14 C 1.37878 * 120.00106 * 294.84674 * 12 10 9 15 15 N 1.31514 * 120.00064 * 359.97438 * 14 12 10 16 16 Si 1.86804 * 119.99978 * 179.97438 * 14 12 10 17 17 H 1.48507 * 109.46883 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.46926 * 119.99524 * 16 14 12 19 19 H 1.48499 * 109.47196 * 239.99707 * 16 14 12 20 20 C 1.54881 * 104.19975 * 336.28107 * 10 9 8 21 21 C 1.52997 * 109.47521 * 174.47135 * 3 2 1 22 22 H 1.08993 * 115.55364 * 154.27532 * 21 3 2 23 23 C 1.53005 * 117.49508 * 8.60988 * 21 3 2 24 24 C 1.53001 * 60.00039 * 252.50691 * 23 21 3 25 25 H 1.09005 * 117.49452 * 107.49114 * 24 23 21 26 26 C 1.53002 * 117.50167 * 252.51128 * 24 23 21 27 27 H 1.09007 * 109.46710 * 60.46578 * 1 2 3 28 28 H 1.08992 * 109.47991 * 180.46897 * 1 2 3 29 29 H 1.09001 * 109.47361 * 300.47398 * 1 2 3 30 30 H 1.09001 * 109.47026 * 239.99490 * 2 1 3 31 31 H 1.09009 * 109.46736 * 120.00226 * 2 1 3 32 32 H 1.00904 * 110.99700 * 226.35633 * 5 3 2 33 33 H 1.09001 * 110.03094 * 261.56876 * 8 6 5 34 34 H 1.08997 * 110.03656 * 23.00390 * 8 6 5 35 35 H 1.08993 * 110.11074 * 240.83527 * 9 8 6 36 36 H 1.09000 * 109.92953 * 119.41180 * 9 8 6 37 37 H 0.96994 * 120.00065 * 180.02562 * 15 14 12 38 38 H 1.08999 * 110.75622 * 279.62937 * 20 10 9 39 39 H 1.09000 * 110.91824 * 156.32979 * 20 10 9 40 40 H 1.09000 * 117.50075 * 359.97438 * 23 21 3 41 41 H 1.09000 * 117.49560 * 145.01959 * 23 21 3 42 42 H 1.08994 * 109.46908 * 128.62126 * 26 24 23 43 43 H 1.09002 * 109.46909 * 248.61957 * 26 24 23 44 44 H 1.09001 * 109.46919 * 8.62073 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5982 1.9840 0.8363 5 7 1.6624 2.0953 -1.2606 6 6 0.5087 2.9841 -1.0680 7 1 -0.1713 2.5692 -0.3241 8 6 0.9765 4.3923 -0.6462 9 6 0.0424 5.3935 -1.3530 10 6 -0.9606 4.5571 -2.1742 11 1 -1.8785 4.3985 -1.6081 12 6 -1.2624 5.2311 -3.4879 13 1 -0.9695 4.7617 -4.4154 14 6 -1.9124 6.4469 -3.5056 15 7 -2.2694 7.0183 -2.3762 16 14 -2.2859 7.2827 -5.1340 17 1 -1.7837 6.4404 -6.2493 18 1 -3.7533 7.4643 -5.2721 19 1 -1.6170 8.6079 -5.1752 20 6 -0.2300 3.2120 -2.4102 21 6 3.5637 1.4446 0.1390 22 1 4.0720 2.3169 -0.2716 23 6 4.2836 0.0978 0.0440 24 6 4.1595 0.8053 1.3949 25 1 3.4660 0.3832 2.1222 26 6 5.4234 1.4398 1.9789 27 1 -0.3633 0.5066 -0.8942 28 1 -0.3635 -1.0275 0.0084 29 1 -0.3634 0.5212 0.8857 30 1 1.8933 -0.5139 -0.8899 31 1 1.8932 -0.5139 0.8901 32 1 2.4434 2.5971 -1.6560 33 1 0.8973 4.5037 0.4352 34 1 2.0063 4.5546 -0.9643 35 1 0.6184 6.0408 -2.0143 36 1 -0.4885 5.9924 -0.6129 37 1 -2.7270 7.8734 -2.3887 38 1 0.4805 3.2974 -3.2325 39 1 -0.9432 2.4098 -2.5997 40 1 3.6717 -0.7897 -0.1171 41 1 5.2657 0.0844 -0.4287 42 1 5.2174 2.4745 2.2524 43 1 5.7327 0.8846 2.8645 44 1 6.2204 1.4121 1.2359 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414143208.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:50 Heat of formation + Delta-G solvation = -5.679965 kcal Electronic energy + Delta-G solvation = -19080.856642 eV Core-core repulsion = 16418.421947 eV Total energy + Delta-G solvation = -2662.434695 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.24897 -37.35523 -34.60675 -32.51689 -31.05297 -28.95503 -27.96399 -26.91682 -24.70636 -23.27545 -22.73178 -20.76623 -19.93396 -19.06174 -18.80810 -16.30024 -16.06223 -15.26098 -14.66109 -14.50727 -14.27252 -13.87134 -13.38337 -13.21187 -13.01748 -12.54409 -12.38395 -12.24103 -12.07840 -11.69206 -11.53196 -11.27589 -11.00087 -10.96107 -10.72987 -10.61771 -10.53862 -10.43436 -10.17515 -9.92525 -9.81692 -9.73793 -9.47683 -9.02284 -8.66736 -8.32923 -7.85004 -5.95446 -3.97345 3.32849 3.40923 3.45297 3.63783 4.40747 4.49922 4.67252 4.79139 4.94090 5.03542 5.17869 5.30331 5.36352 5.45560 5.61402 5.61748 5.65148 5.65524 5.69566 5.74921 5.85829 5.94225 5.94944 5.99882 6.11586 6.15330 6.25204 6.31003 6.41850 6.54985 6.57327 6.74130 6.81007 6.92453 7.10489 7.23278 7.40704 7.63158 7.76770 7.84173 7.97028 8.09395 8.54452 9.06648 9.66494 11.14532 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.035639 B = 0.004355 C = 0.004160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.464900 B = 6428.245265 C = 6729.678170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.108 4.108 3 C 0.116 3.884 4 H 0.053 0.947 5 N -0.674 5.674 6 C 0.080 3.920 7 H 0.073 0.927 8 C -0.152 4.152 9 C -0.094 4.094 10 C 0.046 3.954 11 H 0.028 0.972 12 C -0.509 4.509 13 H 0.056 0.944 14 C 0.060 3.940 15 N -0.891 5.891 16 Si 0.887 3.113 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.286 1.286 20 C -0.099 4.099 21 C -0.154 4.154 22 H 0.102 0.898 23 C -0.174 4.174 24 C -0.155 4.155 25 H 0.102 0.898 26 C -0.122 4.122 27 H 0.070 0.930 28 H 0.045 0.955 29 H 0.045 0.955 30 H 0.068 0.932 31 H 0.053 0.947 32 H 0.338 0.662 33 H 0.041 0.959 34 H 0.046 0.954 35 H 0.049 0.951 36 H 0.050 0.950 37 H 0.258 0.742 38 H 0.057 0.943 39 H 0.046 0.954 40 H 0.101 0.899 41 H 0.089 0.911 42 H 0.058 0.942 43 H 0.057 0.943 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.554 -12.060 7.680 18.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.146 4.146 3 C 0.006 3.994 4 H 0.071 0.929 5 N -0.305 5.305 6 C -0.029 4.029 7 H 0.092 0.908 8 C -0.192 4.192 9 C -0.133 4.133 10 C 0.027 3.973 11 H 0.047 0.953 12 C -0.547 4.547 13 H 0.074 0.926 14 C -0.141 4.141 15 N -0.530 5.530 16 Si 0.715 3.285 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.212 1.212 20 C -0.137 4.137 21 C -0.173 4.173 22 H 0.120 0.880 23 C -0.210 4.210 24 C -0.174 4.174 25 H 0.120 0.880 26 C -0.179 4.179 27 H 0.089 0.911 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.086 0.914 31 H 0.071 0.929 32 H 0.157 0.843 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.076 0.924 39 H 0.065 0.935 40 H 0.119 0.881 41 H 0.107 0.893 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 11.086 -12.435 7.526 18.280 hybrid contribution 0.218 1.450 -0.299 1.497 sum 11.304 -10.985 7.227 17.340 Atomic orbital electron populations 1.21792 0.95867 1.00817 1.02460 1.21627 0.96113 0.95965 1.00900 1.21092 0.90668 0.95547 0.92117 0.92889 1.60721 1.09477 1.35613 1.24656 1.22698 0.91427 0.89833 0.98987 0.90842 1.22990 0.99344 0.97753 0.99083 1.22067 0.96393 0.96684 0.98135 1.19454 0.93235 0.89385 0.95183 0.95345 1.21221 1.36885 1.04213 0.92425 0.92611 1.24992 0.95688 0.97401 0.95987 1.69984 1.40550 1.17191 1.25299 0.86616 0.77915 0.79442 0.84502 1.19776 1.21124 1.21182 1.22518 0.97885 0.98745 0.94546 1.22821 0.95385 0.97103 1.02006 0.88030 1.23245 1.01715 0.96512 0.99557 1.22374 0.99853 1.04080 0.91076 0.87987 1.21354 0.95618 1.00405 1.00527 0.91094 0.93599 0.93598 0.91366 0.92869 0.84267 0.93964 0.93533 0.93219 0.93072 0.93267 0.92415 0.93470 0.88105 0.89290 0.92311 0.92367 0.92686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 8.84 37.15 0.33 -1.61 16 2 C -0.11 -1.28 4.20 -26.74 -0.11 -1.39 16 3 C 0.12 1.48 2.50 -67.72 -0.17 1.32 16 4 H 0.05 0.75 7.52 -51.93 -0.39 0.36 16 5 N -0.67 -10.09 5.92 -98.01 -0.58 -10.67 16 6 C 0.08 1.41 2.12 -66.05 -0.14 1.27 16 7 H 0.07 1.31 6.49 -51.93 -0.34 0.97 16 8 C -0.15 -2.86 6.49 -25.50 -0.17 -3.02 16 9 C -0.09 -2.21 5.61 -25.49 -0.14 -2.35 16 10 C 0.05 1.16 2.72 -90.11 -0.24 0.92 16 11 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 12 C -0.51 -14.14 8.37 -34.44 -0.29 -14.43 16 13 H 0.06 1.54 7.77 -52.48 -0.41 1.13 16 14 C 0.06 1.70 5.35 -17.82 -0.10 1.60 16 15 N -0.89 -25.99 12.63 55.43 0.70 -25.29 16 16 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 17 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 C -0.10 -2.07 5.97 -24.74 -0.15 -2.22 16 21 C -0.15 -1.72 5.43 -90.62 -0.49 -2.22 16 22 H 0.10 1.17 7.82 -51.93 -0.41 0.76 16 23 C -0.17 -1.70 9.22 -26.73 -0.25 -1.94 16 24 C -0.16 -1.51 5.74 -90.62 -0.52 -2.03 16 25 H 0.10 0.98 7.59 -51.93 -0.39 0.59 16 26 C -0.12 -1.04 10.19 37.16 0.38 -0.66 16 27 H 0.07 1.05 6.78 -51.92 -0.35 0.69 16 28 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.83 7.36 -51.93 -0.38 0.45 16 31 H 0.05 0.56 6.67 -51.92 -0.35 0.21 16 32 H 0.34 4.99 7.33 -39.29 -0.29 4.70 16 33 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.05 0.82 7.55 -51.93 -0.39 0.42 16 35 H 0.05 1.24 7.83 -51.93 -0.41 0.83 16 36 H 0.05 1.28 8.06 -51.93 -0.42 0.86 16 37 H 0.26 7.16 8.31 -40.82 -0.34 6.83 16 38 H 0.06 1.24 8.05 -51.93 -0.42 0.82 16 39 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.10 0.97 5.89 -51.93 -0.31 0.67 16 41 H 0.09 0.81 8.05 -51.93 -0.42 0.39 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.05 0.45 7.90 -51.93 -0.41 0.04 16 LS Contribution 336.11 15.07 5.07 5.07 Total: -1.00 -27.87 336.11 -10.06 -37.93 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -8.17 Total: 3.20 kcal Atomic # 6 Polarization: -24.70 SS G_CDS: -2.06 Total: -26.76 kcal Atomic # 7 Polarization: -36.09 SS G_CDS: 0.12 Total: -35.97 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -27.87 -10.06 -37.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414143208.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.255 kcal (2) G-P(sol) polarization free energy of solvation -27.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds