Wall clock time and date at job start Mon Mar 30 2020 07:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47755 * 2 1 4 4 H 1.08997 * 109.46725 * 54.47136 * 3 2 1 5 5 N 1.46901 * 109.46982 * 294.47505 * 3 2 1 6 6 C 1.46897 * 111.00122 * 102.40403 * 5 3 2 7 7 H 1.09000 * 110.43484 * 325.34217 * 6 5 3 8 8 C 1.54267 * 110.48579 * 87.88442 * 6 5 3 9 9 C 1.54091 * 106.49435 * 142.19868 * 8 6 5 10 10 C 1.54273 * 106.61678 * 0.17101 * 9 8 6 11 11 H 1.09000 * 110.48538 * 94.96511 * 10 9 8 12 12 C 1.50703 * 110.59582 * 217.54509 * 10 9 8 13 13 H 1.08004 * 119.99842 * 114.83991 * 12 10 9 14 14 C 1.37878 * 120.00106 * 294.84674 * 12 10 9 15 15 N 1.31514 * 120.00064 * 359.97438 * 14 12 10 16 16 Si 1.86804 * 119.99978 * 179.97438 * 14 12 10 17 17 H 1.48507 * 109.46883 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.46926 * 119.99524 * 16 14 12 19 19 H 1.48499 * 109.47196 * 239.99707 * 16 14 12 20 20 C 1.54881 * 104.19975 * 336.28107 * 10 9 8 21 21 C 1.52997 * 109.47521 * 174.47135 * 3 2 1 22 22 H 1.08993 * 115.55364 * 154.27532 * 21 3 2 23 23 C 1.53005 * 117.49508 * 8.60988 * 21 3 2 24 24 C 1.53001 * 60.00039 * 252.50691 * 23 21 3 25 25 H 1.09005 * 117.49452 * 107.49114 * 24 23 21 26 26 C 1.53002 * 117.50167 * 252.51128 * 24 23 21 27 27 H 1.09007 * 109.46710 * 60.46578 * 1 2 3 28 28 H 1.08992 * 109.47991 * 180.46897 * 1 2 3 29 29 H 1.09001 * 109.47361 * 300.47398 * 1 2 3 30 30 H 1.09001 * 109.47026 * 239.99490 * 2 1 3 31 31 H 1.09009 * 109.46736 * 120.00226 * 2 1 3 32 32 H 1.00904 * 110.99700 * 226.35633 * 5 3 2 33 33 H 1.09001 * 110.03094 * 261.56876 * 8 6 5 34 34 H 1.08997 * 110.03656 * 23.00390 * 8 6 5 35 35 H 1.08993 * 110.11074 * 240.83527 * 9 8 6 36 36 H 1.09000 * 109.92953 * 119.41180 * 9 8 6 37 37 H 0.96994 * 120.00065 * 180.02562 * 15 14 12 38 38 H 1.08999 * 110.75622 * 279.62937 * 20 10 9 39 39 H 1.09000 * 110.91824 * 156.32979 * 20 10 9 40 40 H 1.09000 * 117.50075 * 359.97438 * 23 21 3 41 41 H 1.09000 * 117.49560 * 145.01959 * 23 21 3 42 42 H 1.08994 * 109.46908 * 128.62126 * 26 24 23 43 43 H 1.09002 * 109.46909 * 248.61957 * 26 24 23 44 44 H 1.09001 * 109.46919 * 8.62073 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5982 1.9840 0.8363 5 7 1.6624 2.0953 -1.2606 6 6 0.5087 2.9841 -1.0680 7 1 -0.1713 2.5692 -0.3241 8 6 0.9765 4.3923 -0.6462 9 6 0.0424 5.3935 -1.3530 10 6 -0.9606 4.5571 -2.1742 11 1 -1.8785 4.3985 -1.6081 12 6 -1.2624 5.2311 -3.4879 13 1 -0.9695 4.7617 -4.4154 14 6 -1.9124 6.4469 -3.5056 15 7 -2.2694 7.0183 -2.3762 16 14 -2.2859 7.2827 -5.1340 17 1 -1.7837 6.4404 -6.2493 18 1 -3.7533 7.4643 -5.2721 19 1 -1.6170 8.6079 -5.1752 20 6 -0.2300 3.2120 -2.4102 21 6 3.5637 1.4446 0.1390 22 1 4.0720 2.3169 -0.2716 23 6 4.2836 0.0978 0.0440 24 6 4.1595 0.8053 1.3949 25 1 3.4660 0.3832 2.1222 26 6 5.4234 1.4398 1.9789 27 1 -0.3633 0.5066 -0.8942 28 1 -0.3635 -1.0275 0.0084 29 1 -0.3634 0.5212 0.8857 30 1 1.8933 -0.5139 -0.8899 31 1 1.8932 -0.5139 0.8901 32 1 2.4434 2.5971 -1.6560 33 1 0.8973 4.5037 0.4352 34 1 2.0063 4.5546 -0.9643 35 1 0.6184 6.0408 -2.0143 36 1 -0.4885 5.9924 -0.6129 37 1 -2.7270 7.8734 -2.3887 38 1 0.4805 3.2974 -3.2325 39 1 -0.9432 2.4098 -2.5997 40 1 3.6717 -0.7897 -0.1171 41 1 5.2657 0.0844 -0.4287 42 1 5.2174 2.4745 2.2524 43 1 5.7327 0.8846 2.8645 44 1 6.2204 1.4121 1.2359 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414143208.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:49 Heat of formation + Delta-G solvation = -19.810715 kcal Electronic energy + Delta-G solvation = -19081.469397 eV Core-core repulsion = 16418.421947 eV Total energy + Delta-G solvation = -2663.047450 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.31212 -38.78627 -35.92032 -34.32219 -32.44219 -29.89147 -29.73430 -28.33549 -26.20858 -24.94974 -23.63290 -21.61317 -21.25791 -20.87523 -20.06729 -18.32662 -17.13853 -16.63084 -16.39563 -15.85913 -15.49642 -15.23248 -14.40790 -14.28160 -14.16091 -14.02180 -13.80738 -13.52479 -13.23446 -13.06298 -12.90026 -12.85038 -12.49398 -12.39526 -12.24724 -12.04743 -11.71841 -11.68447 -11.57260 -11.50414 -11.27647 -10.99411 -10.75265 -10.71957 -10.66963 -10.47978 -9.11321 -8.11523 -6.20838 1.39502 1.41179 1.53069 2.43832 2.81236 3.19198 3.37980 3.75541 3.92339 4.04689 4.10596 4.12204 4.16390 4.27553 4.37188 4.44720 4.54741 4.70467 4.76126 4.82127 4.86313 4.90712 4.96199 4.99957 5.02211 5.07860 5.08374 5.16174 5.20632 5.23683 5.25854 5.34349 5.40965 5.44673 5.47977 5.51671 5.57162 5.66442 5.93112 5.99836 6.30845 6.43504 6.63016 6.91305 7.46668 8.97952 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.035639 B = 0.004355 C = 0.004160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.464900 B = 6428.245265 C = 6729.678170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.103 4.103 3 C 0.118 3.882 4 H 0.043 0.957 5 N -0.672 5.672 6 C 0.099 3.901 7 H 0.074 0.926 8 C -0.140 4.140 9 C -0.085 4.085 10 C 0.037 3.963 11 H -0.004 1.004 12 C -0.529 4.529 13 H 0.052 0.948 14 C 0.010 3.990 15 N -0.922 5.922 16 Si 0.953 3.047 17 H -0.266 1.266 18 H -0.281 1.281 19 H -0.281 1.281 20 C -0.089 4.089 21 C -0.168 4.168 22 H 0.098 0.902 23 C -0.166 4.166 24 C -0.148 4.148 25 H 0.105 0.895 26 C -0.122 4.122 27 H 0.046 0.954 28 H 0.059 0.941 29 H 0.043 0.957 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.342 0.658 33 H 0.055 0.945 34 H 0.063 0.937 35 H 0.027 0.973 36 H 0.024 0.976 37 H 0.259 0.741 38 H 0.053 0.947 39 H 0.046 0.954 40 H 0.104 0.896 41 H 0.097 0.903 42 H 0.054 0.946 43 H 0.069 0.931 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.094 -13.338 7.831 20.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.141 4.141 3 C 0.008 3.992 4 H 0.061 0.939 5 N -0.302 5.302 6 C -0.011 4.011 7 H 0.092 0.908 8 C -0.180 4.180 9 C -0.124 4.124 10 C 0.018 3.982 11 H 0.014 0.986 12 C -0.567 4.567 13 H 0.071 0.929 14 C -0.189 4.189 15 N -0.562 5.562 16 Si 0.778 3.222 17 H -0.190 1.190 18 H -0.206 1.206 19 H -0.207 1.207 20 C -0.127 4.127 21 C -0.187 4.187 22 H 0.116 0.884 23 C -0.203 4.203 24 C -0.167 4.167 25 H 0.123 0.877 26 C -0.179 4.179 27 H 0.065 0.935 28 H 0.078 0.922 29 H 0.062 0.938 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.161 0.839 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.046 0.954 36 H 0.043 0.957 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.065 0.935 40 H 0.123 0.877 41 H 0.115 0.885 42 H 0.073 0.927 43 H 0.088 0.912 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 12.640 -13.730 7.676 20.180 hybrid contribution -0.278 1.825 -0.326 1.875 sum 12.361 -11.906 7.350 18.670 Atomic orbital electron populations 1.21777 0.96631 1.01369 1.01135 1.21599 0.95328 0.95368 1.01755 1.21099 0.92053 0.95626 0.90392 0.93924 1.60641 1.08829 1.34582 1.26153 1.22363 0.92262 0.89754 0.96730 0.90795 1.22882 0.98954 0.96806 0.99318 1.21850 0.96437 0.96965 0.97142 1.19447 0.92784 0.91908 0.94094 0.98575 1.21584 1.37023 1.04709 0.93356 0.92935 1.25783 0.95573 0.98096 0.99402 1.70108 1.41200 1.17547 1.27340 0.85585 0.77772 0.78362 0.80436 1.19015 1.20647 1.20675 1.22333 0.97685 0.96357 0.96329 1.22704 0.94088 0.97983 1.03920 0.88380 1.23300 1.01859 0.95659 0.99448 1.22454 1.00070 1.03311 0.90856 0.87687 1.21372 0.95173 1.00267 1.01099 0.93468 0.92204 0.93789 0.91422 0.90975 0.83877 0.92666 0.91822 0.95363 0.95697 0.93205 0.92815 0.93485 0.87748 0.88485 0.92687 0.91179 0.92310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.64 8.84 71.98 0.64 -3.00 16 2 C -0.10 -2.20 4.20 30.59 0.13 -2.07 16 3 C 0.12 2.79 2.50 44.91 0.11 2.91 16 4 H 0.04 1.12 7.52 -2.39 -0.02 1.10 16 5 N -0.67 -19.11 5.92 -464.00 -2.75 -21.85 16 6 C 0.10 3.44 2.12 45.99 0.10 3.54 16 7 H 0.07 2.59 6.49 -2.39 -0.02 2.58 16 8 C -0.14 -5.17 6.49 31.39 0.20 -4.97 16 9 C -0.09 -4.10 5.61 31.40 0.18 -3.93 16 10 C 0.04 1.89 2.72 -10.46 -0.03 1.86 16 11 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 12 C -0.53 -30.02 8.37 25.60 0.21 -29.81 16 13 H 0.05 2.94 7.77 -2.91 -0.02 2.92 16 14 C 0.01 0.56 5.35 84.65 0.45 1.01 16 15 N -0.92 -55.16 12.63 21.45 0.27 -54.89 16 16 Si 0.95 44.68 29.54 68.60 2.03 46.71 16 17 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 18 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 19 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 20 C -0.09 -3.75 5.97 31.88 0.19 -3.56 16 21 C -0.17 -3.36 5.43 -10.79 -0.06 -3.42 16 22 H 0.10 2.05 7.82 -2.39 -0.02 2.03 16 23 C -0.17 -2.77 9.22 30.60 0.28 -2.49 16 24 C -0.15 -2.48 5.74 -10.79 -0.06 -2.54 16 25 H 0.11 1.71 7.59 -2.38 -0.02 1.69 16 26 C -0.12 -1.77 10.19 71.98 0.73 -1.04 16 27 H 0.05 1.35 6.78 -2.38 -0.02 1.33 16 28 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.07 1.48 7.36 -2.39 -0.02 1.47 16 31 H 0.07 1.30 6.67 -2.38 -0.02 1.28 16 32 H 0.34 9.45 7.33 -89.69 -0.66 8.80 16 33 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.06 2.14 7.55 -2.39 -0.02 2.12 16 35 H 0.03 1.43 7.83 -2.39 -0.02 1.42 16 36 H 0.02 1.28 8.06 -2.39 -0.02 1.26 16 37 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 38 H 0.05 2.29 8.05 -2.39 -0.02 2.27 16 39 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.10 1.68 5.89 -2.39 -0.01 1.67 16 41 H 0.10 1.48 8.05 -2.39 -0.02 1.46 16 42 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.06 0.81 7.90 -2.39 -0.02 0.79 16 Total: -1.00 -60.57 336.11 2.92 -57.65 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: 0.29 Total: 19.88 kcal Atomic # 6 Polarization: -50.58 SS G_CDS: 3.08 Total: -47.50 kcal Atomic # 7 Polarization: -74.26 SS G_CDS: -2.48 Total: -76.74 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -60.57 2.92 -57.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414143208.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.840 kcal (2) G-P(sol) polarization free energy of solvation -60.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds