Wall clock time and date at job start Mon Mar 30 2020 07:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47375 * 2 1 4 4 H 1.08995 * 109.47096 * 179.00646 * 3 2 1 5 5 N 1.46896 * 109.46773 * 59.00383 * 3 2 1 6 6 C 1.46901 * 110.99834 * 82.82805 * 5 3 2 7 7 H 1.09004 * 110.01465 * 327.01050 * 6 5 3 8 8 C 1.53868 * 110.03602 * 88.45474 * 6 5 3 9 9 C 1.54471 * 106.68600 * 119.44138 * 8 6 5 10 10 C 1.54888 * 104.09774 * 23.34688 * 9 8 6 11 11 H 1.09000 * 110.75910 * 80.70672 * 10 9 8 12 12 C 1.50699 * 110.75150 * 203.89196 * 10 9 8 13 13 H 1.08001 * 120.00157 * 111.43821 * 12 10 9 14 14 C 1.37876 * 120.00271 * 291.43467 * 12 10 9 15 15 N 1.31516 * 120.00027 * 2.28577 * 14 12 10 16 16 Si 1.86800 * 120.00215 * 182.28661 * 14 12 10 17 17 H 1.48497 * 109.47032 * 265.01794 * 16 14 12 18 18 H 1.48501 * 109.47251 * 145.01631 * 16 14 12 19 19 H 1.48496 * 109.47346 * 25.01914 * 16 14 12 20 20 C 1.54270 * 110.03193 * 205.62214 * 6 5 3 21 21 C 1.52994 * 109.46992 * 299.00972 * 3 2 1 22 22 H 1.09002 * 115.55417 * 85.71841 * 21 3 2 23 23 C 1.53000 * 117.49906 * 231.39257 * 21 3 2 24 24 C 1.52997 * 60.00417 * 107.48809 * 23 21 3 25 25 H 1.08996 * 117.49851 * 252.51361 * 24 23 21 26 26 C 1.53001 * 117.49891 * 107.49010 * 24 23 21 27 27 H 1.09000 * 109.47167 * 185.34686 * 1 2 3 28 28 H 1.08994 * 109.47157 * 305.34868 * 1 2 3 29 29 H 1.08997 * 109.47207 * 65.35210 * 1 2 3 30 30 H 1.09007 * 109.47174 * 239.99943 * 2 1 3 31 31 H 1.09003 * 109.46997 * 119.99972 * 2 1 3 32 32 H 1.00899 * 111.00089 * 206.77693 * 5 3 2 33 33 H 1.08999 * 110.03316 * 238.57013 * 8 6 5 34 34 H 1.09002 * 110.03054 * 0.02562 * 8 6 5 35 35 H 1.08993 * 110.40280 * 264.75743 * 9 8 6 36 36 H 1.09009 * 110.65559 * 142.05472 * 9 8 6 37 37 H 0.96999 * 120.00428 * 180.02562 * 15 14 12 38 38 H 1.09002 * 110.48772 * 98.42706 * 20 6 5 39 39 H 1.08998 * 110.48469 * 335.78312 * 20 6 5 40 40 H 1.09002 * 117.49598 * 214.98013 * 23 21 3 41 41 H 1.08998 * 117.49373 * 359.97438 * 23 21 3 42 42 H 1.08997 * 109.46930 * 351.37968 * 26 24 23 43 43 H 1.08996 * 109.46932 * 111.38053 * 26 24 23 44 44 H 1.09007 * 109.47190 * 231.38105 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1298 1.4425 0.0178 5 7 1.5308 2.1418 1.1872 6 6 2.3665 1.8612 2.3623 7 1 2.7656 0.8486 2.3030 8 6 3.5178 2.8786 2.4455 9 6 3.3520 3.6273 3.7864 10 6 2.5301 2.6512 4.6645 11 1 3.1737 1.8849 5.0965 12 6 1.7923 3.3978 5.7457 13 1 0.7149 3.4669 5.7155 14 6 2.4926 3.9928 6.7737 15 7 3.8069 3.9472 6.7867 16 14 1.5746 4.8634 8.1480 17 1 1.4856 6.3139 7.8424 18 1 2.3017 4.6710 9.4284 19 1 0.2068 4.2975 8.2657 20 6 1.5372 2.0277 3.6525 21 6 1.5505 2.1565 -1.2615 22 1 0.5573 2.6005 -1.1950 23 6 2.5941 2.8841 -2.1114 24 6 1.9767 1.5767 -2.6118 25 1 2.6057 0.6867 -2.6014 26 6 0.9759 1.6643 -3.7658 27 1 -0.3633 -1.0232 0.0958 28 1 -0.3633 0.5945 0.8382 29 1 -0.3633 0.4286 -0.9340 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.4629 3.1347 1.0207 33 1 4.4764 2.3600 2.4271 34 1 3.4563 3.5809 1.6142 35 1 2.8054 4.5583 3.6367 36 1 4.3236 3.8230 4.2403 37 1 4.2996 4.3654 7.5100 38 1 1.1875 1.0587 4.0089 39 1 0.6955 2.6986 3.4809 40 1 2.2873 3.8066 -2.6043 41 1 3.6294 2.8544 -1.7716 42 1 0.7394 2.7099 -3.9630 43 1 1.4108 1.2155 -4.6587 44 1 0.0644 1.1299 -3.4976 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414143210.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:52 Heat of formation + Delta-G solvation = -7.151991 kcal Electronic energy + Delta-G solvation = -19078.067718 eV Core-core repulsion = 16415.569192 eV Total energy + Delta-G solvation = -2662.498527 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.13051 -37.33281 -34.63729 -32.53421 -30.95085 -28.89677 -27.95509 -26.75022 -24.90137 -23.60296 -22.38070 -20.93896 -19.42989 -19.08244 -18.90039 -16.32455 -16.28978 -15.01349 -14.63008 -14.47475 -14.02940 -13.88196 -13.74179 -13.21444 -12.98033 -12.61418 -12.31698 -12.23400 -11.97762 -11.68851 -11.56635 -11.34144 -10.98128 -10.89128 -10.74266 -10.68290 -10.47088 -10.40113 -10.14275 -9.89658 -9.75159 -9.70376 -9.51187 -9.01830 -8.72962 -8.30644 -7.87084 -5.95126 -3.96867 3.33881 3.40953 3.45028 3.66410 4.32828 4.49751 4.71333 4.76089 4.96751 5.14182 5.24895 5.34292 5.36398 5.46933 5.60464 5.62642 5.63430 5.64825 5.72894 5.73800 5.85645 5.91629 5.94254 6.08174 6.16060 6.19161 6.28697 6.37620 6.41075 6.57998 6.65440 6.76068 6.81064 6.91837 7.12609 7.20957 7.39593 7.65981 7.75771 7.85633 7.96623 8.10379 8.54105 9.06756 9.66826 11.14699 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.039177 B = 0.004273 C = 0.004128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.529388 B = 6551.664475 C = 6781.555271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.107 4.107 3 C 0.117 3.883 4 H 0.038 0.962 5 N -0.674 5.674 6 C 0.084 3.916 7 H 0.064 0.936 8 C -0.153 4.153 9 C -0.099 4.099 10 C 0.047 3.953 11 H 0.030 0.970 12 C -0.508 4.508 13 H 0.055 0.945 14 C 0.061 3.939 15 N -0.892 5.892 16 Si 0.888 3.112 17 H -0.283 1.283 18 H -0.287 1.287 19 H -0.274 1.274 20 C -0.100 4.100 21 C -0.141 4.141 22 H 0.109 0.891 23 C -0.181 4.181 24 C -0.150 4.150 25 H 0.101 0.899 26 C -0.120 4.120 27 H 0.038 0.962 28 H 0.073 0.927 29 H 0.045 0.955 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.340 0.660 33 H 0.046 0.954 34 H 0.044 0.956 35 H 0.045 0.955 36 H 0.061 0.939 37 H 0.258 0.742 38 H 0.044 0.956 39 H 0.061 0.939 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.054 0.946 43 H 0.056 0.944 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.980 -4.857 -17.718 18.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.145 4.145 3 C 0.007 3.993 4 H 0.056 0.944 5 N -0.304 5.304 6 C -0.025 4.025 7 H 0.082 0.918 8 C -0.192 4.192 9 C -0.138 4.138 10 C 0.028 3.972 11 H 0.049 0.951 12 C -0.547 4.547 13 H 0.073 0.927 14 C -0.141 4.141 15 N -0.531 5.531 16 Si 0.716 3.284 17 H -0.209 1.209 18 H -0.213 1.213 19 H -0.199 1.199 20 C -0.139 4.139 21 C -0.160 4.160 22 H 0.127 0.873 23 C -0.218 4.218 24 C -0.169 4.169 25 H 0.119 0.881 26 C -0.178 4.178 27 H 0.057 0.943 28 H 0.092 0.908 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.159 0.841 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.080 0.920 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.079 0.921 40 H 0.110 0.890 41 H 0.109 0.891 42 H 0.073 0.927 43 H 0.075 0.925 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.293 -5.297 -17.464 18.544 hybrid contribution 0.569 1.111 0.572 1.373 sum -2.724 -4.186 -16.892 17.614 Atomic orbital electron populations 1.21608 0.95318 1.00427 1.02318 1.21469 0.97166 0.95245 1.00642 1.21060 0.96022 0.93997 0.88258 0.94409 1.60754 1.52575 1.14416 1.02691 1.22340 0.92009 0.97439 0.90733 0.91814 1.22989 0.98100 0.98208 0.99906 1.22314 1.01202 0.98275 0.92000 1.19594 0.92363 0.93611 0.91590 0.95148 1.21165 0.93079 1.33008 1.07423 0.92660 1.24993 0.94809 0.96328 0.97925 1.69969 1.05629 1.44856 1.32619 0.86648 0.79995 0.79889 0.81873 1.20891 1.21331 1.19873 1.22422 0.98748 0.99616 0.93077 1.22524 0.99447 1.02840 0.91172 0.87272 1.23218 0.98506 0.95705 1.04382 1.22297 1.01975 0.97454 0.95131 0.88097 1.21341 0.98172 1.01663 0.96586 0.94292 0.90848 0.93570 0.92806 0.92349 0.84116 0.93499 0.93765 0.93627 0.92040 0.93227 0.93697 0.92077 0.89004 0.89101 0.92699 0.92453 0.92214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.49 37.16 0.35 -1.33 16 2 C -0.11 -1.32 5.60 -26.73 -0.15 -1.47 16 3 C 0.12 1.50 2.39 -67.72 -0.16 1.34 16 4 H 0.04 0.53 7.57 -51.93 -0.39 0.13 16 5 N -0.67 -10.13 5.12 -98.58 -0.50 -10.64 16 6 C 0.08 1.49 3.01 -66.60 -0.20 1.29 16 7 H 0.06 1.12 7.01 -51.93 -0.36 0.76 16 8 C -0.15 -2.87 6.37 -25.51 -0.16 -3.03 16 9 C -0.10 -2.32 5.81 -24.96 -0.15 -2.46 16 10 C 0.05 1.18 2.70 -89.78 -0.24 0.94 16 11 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 12 C -0.51 -14.12 8.47 -34.44 -0.29 -14.41 16 13 H 0.06 1.52 7.76 -52.49 -0.41 1.12 16 14 C 0.06 1.70 5.39 -17.82 -0.10 1.61 16 15 N -0.89 -26.00 12.47 55.43 0.69 -25.31 16 16 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 17 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 18 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 19 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 20 C -0.10 -2.11 5.95 -25.07 -0.15 -2.26 16 21 C -0.14 -1.56 3.75 -90.62 -0.34 -1.90 16 22 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 23 C -0.18 -1.86 9.82 -26.73 -0.26 -2.12 16 24 C -0.15 -1.44 5.60 -90.62 -0.51 -1.95 16 25 H 0.10 0.97 7.60 -51.93 -0.39 0.58 16 26 C -0.12 -0.99 10.19 37.16 0.38 -0.61 16 27 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.07 1.02 7.41 -51.93 -0.38 0.64 16 29 H 0.05 0.52 7.43 -51.93 -0.39 0.13 16 30 H 0.05 0.59 7.25 -51.93 -0.38 0.22 16 31 H 0.06 0.79 7.33 -51.93 -0.38 0.41 16 32 H 0.34 5.15 7.79 -39.29 -0.31 4.84 16 33 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.04 0.76 7.55 -51.93 -0.39 0.37 16 35 H 0.04 1.09 8.04 -51.93 -0.42 0.68 16 36 H 0.06 1.57 7.68 -51.92 -0.40 1.17 16 37 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 38 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.06 1.31 7.93 -51.93 -0.41 0.90 16 40 H 0.09 0.87 8.05 -51.93 -0.42 0.45 16 41 H 0.09 0.96 8.05 -51.93 -0.42 0.55 16 42 H 0.05 0.44 7.90 -51.93 -0.41 0.03 16 43 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 LS Contribution 340.65 15.07 5.13 5.13 Total: -1.00 -27.66 340.65 -10.03 -37.69 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -8.35 Total: 2.94 kcal Atomic # 6 Polarization: -24.39 SS G_CDS: -1.98 Total: -26.37 kcal Atomic # 7 Polarization: -36.13 SS G_CDS: 0.19 Total: -35.94 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -27.66 -10.03 -37.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414143210.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.543 kcal (2) G-P(sol) polarization free energy of solvation -27.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds