Wall clock time and date at job start Mon Mar 30 2020 07:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47216 * 2 1 4 4 H 1.09001 * 109.47316 * 54.99786 * 3 2 1 5 5 C 1.50706 * 109.47177 * 175.00059 * 3 2 1 6 6 H 1.07999 * 120.00149 * 119.99731 * 5 3 2 7 7 C 1.37878 * 119.99861 * 299.99632 * 5 3 2 8 8 N 1.31515 * 120.00085 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00058 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47106 * 90.00024 * 9 7 5 11 11 H 1.48497 * 109.47268 * 210.00154 * 9 7 5 12 12 H 1.48500 * 109.47182 * 330.00166 * 9 7 5 13 13 N 1.46897 * 109.46962 * 294.99636 * 3 2 1 14 14 C 1.46899 * 110.99992 * 85.00431 * 13 3 2 15 15 C 1.53849 * 113.60736 * 205.00190 * 14 13 3 16 16 C 1.53387 * 86.98099 * 220.19043 * 15 14 13 17 17 C 1.53431 * 87.45800 * 25.22239 * 16 15 14 18 18 C 1.52726 * 113.56075 * 139.79874 * 16 15 14 19 19 C 1.53145 * 109.26721 * 187.51603 * 18 16 15 20 20 C 1.52975 * 109.42791 * 302.13194 * 19 18 16 21 21 C 1.52965 * 109.70319 * 61.69140 * 20 19 18 22 22 C 1.52821 * 113.62738 * 270.61581 * 16 15 14 23 23 H 1.09005 * 109.47506 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47073 * 300.00253 * 1 2 3 25 25 H 1.08997 * 109.47215 * 59.99836 * 1 2 3 26 26 H 1.09003 * 109.47088 * 239.99230 * 2 1 3 27 27 H 1.09007 * 109.46995 * 119.99663 * 2 1 3 28 28 H 0.97000 * 120.00385 * 179.97438 * 8 7 5 29 29 H 1.00900 * 111.00235 * 208.95542 * 13 3 2 30 30 H 1.09005 * 112.84011 * 336.15955 * 14 13 3 31 31 H 1.08999 * 113.63413 * 105.66764 * 15 14 13 32 32 H 1.09005 * 113.70521 * 334.72886 * 15 14 13 33 33 H 1.09004 * 113.63180 * 89.29295 * 17 16 15 34 34 H 1.09000 * 113.63039 * 220.25623 * 17 16 15 35 35 H 1.09002 * 109.51116 * 67.56659 * 18 16 15 36 36 H 1.08997 * 109.51204 * 307.46836 * 18 16 15 37 37 H 1.09001 * 109.47682 * 62.11672 * 19 18 16 38 38 H 1.09000 * 109.47675 * 182.13549 * 19 18 16 39 39 H 1.08996 * 109.43149 * 181.76744 * 20 19 18 40 40 H 1.09002 * 109.42898 * 301.61950 * 20 19 18 41 41 H 1.08999 * 109.47634 * 58.30881 * 21 20 19 42 42 H 1.09003 * 109.47793 * 178.32399 * 21 20 19 43 43 H 1.09006 * 109.49455 * 52.60477 * 22 16 15 44 44 H 1.08997 * 109.54074 * 292.49562 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8888 -0.6523 7 6 4.1433 0.8784 1.2280 8 7 3.4062 0.3366 2.1729 9 14 6.0050 0.8799 1.3812 10 1 6.4428 2.1128 2.0836 11 1 6.4390 -0.3111 2.1546 12 1 6.6131 0.8393 0.0270 13 7 1.6514 2.0991 -1.2552 14 6 0.2914 2.6467 -1.1639 15 6 -0.4080 2.7899 -2.5267 16 6 -0.9586 4.1260 -2.0125 17 6 0.2484 4.1815 -1.0669 18 6 -0.9583 5.2322 -3.0655 19 6 -1.3457 6.5586 -2.4052 20 6 -2.7194 6.4173 -1.7470 21 6 -2.6611 5.3459 -0.6568 22 6 -2.2969 3.9980 -1.2858 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.8933 -0.5140 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 3.8292 -0.0618 2.9496 29 1 2.3139 2.8170 -1.5080 30 1 -0.3172 2.1446 -0.4117 31 1 -1.1781 2.0391 -2.7037 32 1 0.2817 2.8948 -3.3643 33 1 1.1206 4.6712 -1.5000 34 1 0.0059 4.5497 -0.0701 35 1 -1.6784 4.9908 -3.8474 36 1 0.0368 5.3196 -3.5015 37 1 -0.6051 6.8178 -1.6485 38 1 -1.3835 7.3434 -3.1607 39 1 -3.0090 7.3701 -1.3041 40 1 -3.4539 6.1297 -2.4992 41 1 -1.9063 5.6187 0.0808 42 1 -3.6335 5.2692 -0.1703 43 1 -2.2159 3.2418 -0.5049 44 1 -3.0709 3.7066 -1.9958 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000421345181.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:09 Heat of formation + Delta-G solvation = -10.507804 kcal Electronic energy + Delta-G solvation = -19593.280235 eV Core-core repulsion = 16930.636189 eV Total energy + Delta-G solvation = -2662.644046 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.21442 -36.54244 -34.57633 -31.92259 -30.82247 -30.25479 -27.94719 -25.86767 -25.31563 -22.97861 -22.69518 -21.34507 -19.84622 -19.45394 -17.86478 -16.40263 -15.35311 -15.24648 -14.63216 -14.50662 -14.01877 -13.66566 -13.59612 -13.12185 -12.59077 -12.41877 -12.31177 -12.13179 -11.83871 -11.71772 -11.40627 -11.18417 -11.11160 -10.97222 -10.85687 -10.74603 -10.62656 -10.48676 -10.11462 -9.87551 -9.82898 -9.60690 -9.55466 -9.02120 -8.74842 -8.40778 -7.11483 -5.99631 -4.06048 3.30515 3.37376 3.41283 4.42358 4.62560 4.74361 4.80130 5.13118 5.20919 5.23429 5.30376 5.39128 5.42395 5.47342 5.58297 5.67409 5.76804 5.82053 5.96871 6.02271 6.03990 6.14713 6.16063 6.23677 6.24130 6.29837 6.33531 6.37180 6.41350 6.44677 6.55992 6.62899 6.79737 6.88632 7.08392 7.19918 7.43750 7.65787 7.81804 7.95785 8.35164 8.49954 8.74804 9.06345 9.59706 11.05881 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.031359 B = 0.005126 C = 0.004837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.669420 B = 5461.118331 C = 5787.642999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.107 4.107 3 C 0.218 3.782 4 H 0.001 0.999 5 C -0.518 4.518 6 H 0.058 0.942 7 C 0.062 3.938 8 N -0.889 5.889 9 Si 0.894 3.106 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.274 1.274 13 N -0.677 5.677 14 C 0.067 3.933 15 C -0.122 4.122 16 C -0.080 4.080 17 C -0.157 4.157 18 C -0.099 4.099 19 C -0.118 4.118 20 C -0.117 4.117 21 C -0.119 4.119 22 C -0.093 4.093 23 H 0.028 0.972 24 H 0.036 0.964 25 H 0.051 0.949 26 H 0.037 0.963 27 H 0.089 0.911 28 H 0.260 0.740 29 H 0.331 0.669 30 H 0.099 0.901 31 H 0.058 0.942 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.058 0.942 41 H 0.062 0.938 42 H 0.057 0.943 43 H 0.064 0.936 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.171 9.026 -7.039 15.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.146 4.146 3 C 0.111 3.889 4 H 0.018 0.982 5 C -0.556 4.556 6 H 0.076 0.924 7 C -0.139 4.139 8 N -0.528 5.528 9 Si 0.722 3.278 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.306 5.306 14 C -0.045 4.045 15 C -0.161 4.161 16 C -0.080 4.080 17 C -0.196 4.196 18 C -0.136 4.136 19 C -0.155 4.155 20 C -0.154 4.154 21 C -0.156 4.156 22 C -0.131 4.131 23 H 0.047 0.953 24 H 0.055 0.945 25 H 0.070 0.930 26 H 0.056 0.944 27 H 0.107 0.893 28 H 0.070 0.930 29 H 0.149 0.851 30 H 0.117 0.883 31 H 0.076 0.924 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.083 0.917 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.327 8.315 -7.148 15.765 hybrid contribution 1.153 0.739 0.765 1.569 sum -10.174 9.053 -6.383 15.040 Atomic orbital electron populations 1.22060 0.99973 0.98983 0.99940 1.21533 0.91275 0.99789 1.01960 1.19082 0.94339 0.90939 0.84588 0.98182 1.21303 0.91453 1.37827 1.05033 0.92357 1.24912 0.98144 0.95208 0.95684 1.69890 1.34811 1.38600 1.09500 0.86562 0.85700 0.77422 0.78097 1.20830 1.21238 1.19884 1.60595 1.00841 1.32680 1.36518 1.23241 0.93221 0.91547 0.96448 1.23130 0.99063 0.95196 0.98701 1.21447 0.94553 0.95728 0.96304 1.23722 0.97400 0.99670 0.98856 1.21427 1.01008 0.94059 0.97152 1.21519 0.97078 0.97279 0.99666 1.21485 0.97351 0.98453 0.98118 1.21526 1.00991 0.95200 0.97882 1.21298 0.95599 0.96982 0.99200 0.95293 0.94512 0.92980 0.94403 0.89263 0.92987 0.85120 0.88323 0.92364 0.90252 0.90575 0.92345 0.92463 0.92058 0.91984 0.92654 0.92631 0.92368 0.91883 0.92424 0.91721 0.92162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.14 8.48 37.16 0.32 -2.82 16 2 C -0.11 -2.62 5.45 -26.73 -0.15 -2.77 16 3 C 0.22 5.47 2.20 -68.87 -0.15 5.32 16 4 H 0.00 0.01 7.84 -51.93 -0.41 -0.39 16 5 C -0.52 -14.19 8.59 -34.44 -0.30 -14.49 16 6 H 0.06 1.58 7.62 -52.49 -0.40 1.18 16 7 C 0.06 1.72 5.29 -17.82 -0.09 1.62 16 8 N -0.89 -25.40 11.29 55.43 0.63 -24.77 16 9 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 13 N -0.68 -14.35 6.37 -100.03 -0.64 -14.99 16 14 C 0.07 1.18 2.18 -66.83 -0.15 1.04 16 15 C -0.12 -1.84 7.01 -26.09 -0.18 -2.02 16 16 C -0.08 -1.05 0.76 -154.32 -0.12 -1.16 16 17 C -0.16 -2.44 6.44 -26.07 -0.17 -2.61 16 18 C -0.10 -1.15 5.09 -26.80 -0.14 -1.28 16 19 C -0.12 -1.25 5.85 -26.67 -0.16 -1.40 16 20 C -0.12 -1.16 5.86 -26.76 -0.16 -1.32 16 21 C -0.12 -1.30 5.84 -26.67 -0.16 -1.46 16 22 C -0.09 -1.14 5.03 -26.75 -0.13 -1.27 16 23 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.04 0.75 7.90 -51.93 -0.41 0.34 16 25 H 0.05 1.00 5.59 -51.93 -0.29 0.71 16 26 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.09 2.43 5.95 -51.92 -0.31 2.12 16 28 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.33 6.94 7.69 -39.29 -0.30 6.64 16 30 H 0.10 1.86 4.59 -51.93 -0.24 1.62 16 31 H 0.06 0.85 8.09 -51.93 -0.42 0.43 16 32 H 0.08 1.21 8.09 -51.93 -0.42 0.79 16 33 H 0.08 1.19 7.74 -51.93 -0.40 0.79 16 34 H 0.06 0.93 7.36 -51.93 -0.38 0.55 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.73 8.10 -51.93 -0.42 0.31 16 37 H 0.06 0.70 7.97 -51.93 -0.41 0.29 16 38 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.75 7.38 -51.93 -0.38 0.36 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.06 0.85 7.32 -51.93 -0.38 0.47 16 44 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 325.29 15.07 4.90 4.90 Total: -1.00 -27.43 325.29 -9.95 -37.39 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -8.10 Total: 5.80 kcal Atomic # 6 Polarization: -22.90 SS G_CDS: -1.73 Total: -24.63 kcal Atomic # 7 Polarization: -39.75 SS G_CDS: -0.01 Total: -39.77 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -27.43 -9.95 -37.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421345181.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.879 kcal (2) G-P(sol) polarization free energy of solvation -27.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds