Wall clock time and date at job start Mon Mar 30 2020 07:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47216 * 2 1 4 4 H 1.09001 * 109.47316 * 54.99786 * 3 2 1 5 5 C 1.50706 * 109.47177 * 175.00059 * 3 2 1 6 6 H 1.07999 * 120.00149 * 119.99731 * 5 3 2 7 7 C 1.37878 * 119.99861 * 299.99632 * 5 3 2 8 8 N 1.31515 * 120.00085 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00058 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47106 * 90.00024 * 9 7 5 11 11 H 1.48497 * 109.47268 * 210.00154 * 9 7 5 12 12 H 1.48500 * 109.47182 * 330.00166 * 9 7 5 13 13 N 1.46897 * 109.46962 * 294.99636 * 3 2 1 14 14 C 1.46899 * 110.99992 * 85.00431 * 13 3 2 15 15 C 1.53849 * 113.60736 * 205.00190 * 14 13 3 16 16 C 1.53387 * 86.98099 * 220.19043 * 15 14 13 17 17 C 1.53431 * 87.45800 * 25.22239 * 16 15 14 18 18 C 1.52726 * 113.56075 * 139.79874 * 16 15 14 19 19 C 1.53145 * 109.26721 * 187.51603 * 18 16 15 20 20 C 1.52975 * 109.42791 * 302.13194 * 19 18 16 21 21 C 1.52965 * 109.70319 * 61.69140 * 20 19 18 22 22 C 1.52821 * 113.62738 * 270.61581 * 16 15 14 23 23 H 1.09005 * 109.47506 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47073 * 300.00253 * 1 2 3 25 25 H 1.08997 * 109.47215 * 59.99836 * 1 2 3 26 26 H 1.09003 * 109.47088 * 239.99230 * 2 1 3 27 27 H 1.09007 * 109.46995 * 119.99663 * 2 1 3 28 28 H 0.97000 * 120.00385 * 179.97438 * 8 7 5 29 29 H 1.00900 * 111.00235 * 208.95542 * 13 3 2 30 30 H 1.09005 * 112.84011 * 336.15955 * 14 13 3 31 31 H 1.08999 * 113.63413 * 105.66764 * 15 14 13 32 32 H 1.09005 * 113.70521 * 334.72886 * 15 14 13 33 33 H 1.09004 * 113.63180 * 89.29295 * 17 16 15 34 34 H 1.09000 * 113.63039 * 220.25623 * 17 16 15 35 35 H 1.09002 * 109.51116 * 67.56659 * 18 16 15 36 36 H 1.08997 * 109.51204 * 307.46836 * 18 16 15 37 37 H 1.09001 * 109.47682 * 62.11672 * 19 18 16 38 38 H 1.09000 * 109.47675 * 182.13549 * 19 18 16 39 39 H 1.08996 * 109.43149 * 181.76744 * 20 19 18 40 40 H 1.09002 * 109.42898 * 301.61950 * 20 19 18 41 41 H 1.08999 * 109.47634 * 58.30881 * 21 20 19 42 42 H 1.09003 * 109.47793 * 178.32399 * 21 20 19 43 43 H 1.09006 * 109.49455 * 52.60477 * 22 16 15 44 44 H 1.08997 * 109.54074 * 292.49562 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8888 -0.6523 7 6 4.1433 0.8784 1.2280 8 7 3.4062 0.3366 2.1729 9 14 6.0050 0.8799 1.3812 10 1 6.4428 2.1128 2.0836 11 1 6.4390 -0.3111 2.1546 12 1 6.6131 0.8393 0.0270 13 7 1.6514 2.0991 -1.2552 14 6 0.2914 2.6467 -1.1639 15 6 -0.4080 2.7899 -2.5267 16 6 -0.9586 4.1260 -2.0125 17 6 0.2484 4.1815 -1.0669 18 6 -0.9583 5.2322 -3.0655 19 6 -1.3457 6.5586 -2.4052 20 6 -2.7194 6.4173 -1.7470 21 6 -2.6611 5.3459 -0.6568 22 6 -2.2969 3.9980 -1.2858 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.8933 -0.5140 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 3.8292 -0.0618 2.9496 29 1 2.3139 2.8170 -1.5080 30 1 -0.3172 2.1446 -0.4117 31 1 -1.1781 2.0391 -2.7037 32 1 0.2817 2.8948 -3.3643 33 1 1.1206 4.6712 -1.5000 34 1 0.0059 4.5497 -0.0701 35 1 -1.6784 4.9908 -3.8474 36 1 0.0368 5.3196 -3.5015 37 1 -0.6051 6.8178 -1.6485 38 1 -1.3835 7.3434 -3.1607 39 1 -3.0090 7.3701 -1.3041 40 1 -3.4539 6.1297 -2.4992 41 1 -1.9063 5.6187 0.0808 42 1 -3.6335 5.2692 -0.1703 43 1 -2.2159 3.2418 -0.5049 44 1 -3.0709 3.7066 -1.9958 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000421345181.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:08 Heat of formation + Delta-G solvation = -24.799828 kcal Electronic energy + Delta-G solvation = -19593.899984 eV Core-core repulsion = 16930.636189 eV Total energy + Delta-G solvation = -2663.263794 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.39743 -38.03504 -36.03924 -33.88861 -31.94621 -31.71790 -29.38395 -27.55490 -26.58131 -24.77953 -23.72171 -22.49172 -21.38981 -21.03111 -19.03727 -18.34949 -17.00846 -16.45901 -16.20336 -15.76703 -15.45664 -14.87120 -14.71911 -14.43495 -14.22717 -14.03939 -13.60692 -13.54149 -13.19213 -13.08943 -12.89025 -12.82672 -12.72409 -12.40744 -12.26566 -11.98912 -11.87185 -11.85442 -11.63200 -11.51777 -11.31804 -10.87680 -10.78662 -10.74744 -10.50814 -10.37344 -8.86425 -8.11332 -6.25619 1.40536 1.41853 1.52386 2.41592 3.15815 3.55562 3.67238 3.74349 3.89663 4.11306 4.20805 4.30395 4.35674 4.45874 4.52004 4.60875 4.64664 4.69002 4.72914 4.81060 4.81745 4.89627 4.92106 4.96913 5.08482 5.13831 5.17623 5.22219 5.27000 5.28877 5.31591 5.36352 5.43188 5.47025 5.55987 5.64993 5.66465 5.68088 5.79475 5.92391 6.31232 6.58119 6.86564 7.06498 7.44812 8.93173 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.031359 B = 0.005126 C = 0.004837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.669420 B = 5461.118331 C = 5787.642999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.102 4.102 3 C 0.226 3.774 4 H -0.036 1.036 5 C -0.539 4.539 6 H 0.056 0.944 7 C 0.014 3.986 8 N -0.916 5.916 9 Si 0.959 3.041 10 H -0.276 1.276 11 H -0.283 1.283 12 H -0.269 1.269 13 N -0.676 5.676 14 C 0.053 3.947 15 C -0.114 4.114 16 C -0.063 4.063 17 C -0.154 4.154 18 C -0.097 4.097 19 C -0.117 4.117 20 C -0.114 4.114 21 C -0.118 4.118 22 C -0.094 4.094 23 H 0.047 0.953 24 H 0.032 0.968 25 H 0.066 0.934 26 H 0.028 0.972 27 H 0.059 0.941 28 H 0.261 0.739 29 H 0.330 0.670 30 H 0.086 0.914 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.048 0.952 35 H 0.071 0.929 36 H 0.057 0.943 37 H 0.049 0.951 38 H 0.071 0.929 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.047 0.953 42 H 0.070 0.930 43 H 0.049 0.951 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.090 9.966 -8.388 17.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.141 4.141 3 C 0.118 3.882 4 H -0.018 1.018 5 C -0.577 4.577 6 H 0.074 0.926 7 C -0.185 4.185 8 N -0.555 5.555 9 Si 0.785 3.215 10 H -0.202 1.202 11 H -0.208 1.208 12 H -0.193 1.193 13 N -0.305 5.305 14 C -0.058 4.058 15 C -0.152 4.152 16 C -0.063 4.063 17 C -0.194 4.194 18 C -0.135 4.135 19 C -0.155 4.155 20 C -0.151 4.151 21 C -0.156 4.156 22 C -0.132 4.132 23 H 0.066 0.934 24 H 0.051 0.949 25 H 0.084 0.916 26 H 0.046 0.954 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.147 0.853 30 H 0.104 0.896 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.067 0.933 35 H 0.090 0.910 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.066 0.934 42 H 0.088 0.912 43 H 0.068 0.932 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -12.262 9.266 -8.511 17.569 hybrid contribution 1.423 0.451 1.199 1.915 sum -10.839 9.717 -7.312 16.290 Atomic orbital electron populations 1.21909 0.96921 1.00379 1.00438 1.21373 0.94026 0.98849 0.99882 1.18839 0.93195 0.91232 0.84967 1.01822 1.21655 0.92861 1.37987 1.05227 0.92604 1.25705 1.02659 0.94791 0.95351 1.70026 1.36564 1.39072 1.09886 0.85538 0.80242 0.77538 0.78178 1.20201 1.20842 1.19331 1.60584 1.02477 1.33186 1.34233 1.23367 0.91282 0.92845 0.98284 1.23061 0.98840 0.96552 0.96745 1.21358 0.93927 0.95274 0.95774 1.23651 0.98835 0.97670 0.99196 1.21416 1.01368 0.93847 0.96828 1.21519 0.97144 0.97065 0.99748 1.21479 0.97165 0.98548 0.97922 1.21524 1.01149 0.94851 0.98030 1.21322 0.95320 0.97436 0.99102 0.93397 0.94902 0.91562 0.95352 0.92251 0.92946 0.85266 0.89570 0.91546 0.90242 0.90811 0.93326 0.91031 0.92415 0.93239 0.91053 0.91524 0.91222 0.93373 0.91176 0.93206 0.90575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.73 8.48 71.98 0.61 -5.11 16 2 C -0.10 -5.15 5.45 30.59 0.17 -4.98 16 3 C 0.23 11.71 2.20 44.17 0.10 11.81 16 4 H -0.04 -2.07 7.84 -2.39 -0.02 -2.09 16 5 C -0.54 -30.23 8.59 25.60 0.22 -30.01 16 6 H 0.06 3.08 7.62 -2.91 -0.02 3.06 16 7 C 0.01 0.79 5.29 84.65 0.45 1.24 16 8 N -0.92 -53.60 11.29 21.45 0.24 -53.36 16 9 Si 0.96 44.18 29.54 68.60 2.03 46.20 16 10 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 11 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 12 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 13 N -0.68 -29.12 6.37 -470.39 -3.00 -32.12 16 14 C 0.05 1.87 2.18 45.49 0.10 1.97 16 15 C -0.11 -3.25 7.01 31.01 0.22 -3.03 16 16 C -0.06 -1.55 0.76 -52.06 -0.04 -1.59 16 17 C -0.15 -4.79 6.44 31.02 0.20 -4.59 16 18 C -0.10 -2.01 5.09 30.55 0.16 -1.86 16 19 C -0.12 -2.19 5.85 30.63 0.18 -2.01 16 20 C -0.11 -1.94 5.86 30.57 0.18 -1.76 16 21 C -0.12 -2.37 5.84 30.63 0.18 -2.19 16 22 C -0.09 -2.13 5.03 30.58 0.15 -1.97 16 23 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 24 H 0.03 1.35 7.90 -2.39 -0.02 1.33 16 25 H 0.07 2.51 5.59 -2.39 -0.01 2.50 16 26 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.06 3.34 5.95 -2.38 -0.01 3.33 16 28 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 29 H 0.33 14.10 7.69 -89.69 -0.69 13.41 16 30 H 0.09 3.29 4.59 -2.38 -0.01 3.28 16 31 H 0.07 1.80 8.09 -2.39 -0.02 1.78 16 32 H 0.08 2.29 8.09 -2.38 -0.02 2.27 16 33 H 0.07 2.31 7.74 -2.39 -0.02 2.30 16 34 H 0.05 1.58 7.36 -2.39 -0.02 1.57 16 35 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.06 1.25 8.10 -2.39 -0.02 1.23 16 37 H 0.05 1.05 7.97 -2.39 -0.02 1.03 16 38 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.05 1.10 7.38 -2.39 -0.02 1.09 16 42 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.05 1.27 7.32 -2.38 -0.02 1.25 16 44 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -59.50 325.29 2.39 -57.11 By element: Atomic # 1 Polarization: 26.01 SS G_CDS: 0.26 Total: 26.27 kcal Atomic # 6 Polarization: -46.97 SS G_CDS: 2.87 Total: -44.10 kcal Atomic # 7 Polarization: -82.72 SS G_CDS: -2.76 Total: -85.48 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.20 kcal Total: -59.50 2.39 -57.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421345181.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.308 kcal (2) G-P(sol) polarization free energy of solvation -59.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds