Wall clock time and date at job start Mon Mar 30 2020 07:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46994 * 2 1 4 4 H 1.09002 * 109.47048 * 305.16056 * 3 2 1 5 5 N 1.46893 * 109.47532 * 65.16161 * 3 2 1 6 6 C 1.46904 * 111.00202 * 208.00189 * 5 3 2 7 7 H 1.08995 * 110.43213 * 326.58243 * 6 5 3 8 8 C 1.54267 * 110.48105 * 89.26153 * 6 5 3 9 9 C 1.53879 * 106.59673 * 142.28784 * 8 6 5 10 10 C 1.54265 * 106.59806 * 0.02562 * 9 8 6 11 11 H 1.09004 * 110.48539 * 95.06474 * 10 9 8 12 12 C 1.50700 * 110.48409 * 217.70790 * 10 9 8 13 13 H 1.07999 * 119.99338 * 114.77644 * 12 10 9 14 14 C 1.37870 * 120.00351 * 294.77847 * 12 10 9 15 15 N 1.31516 * 120.00096 * 359.97438 * 14 12 10 16 16 Si 1.86797 * 120.00108 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.47011 * 89.99773 * 16 14 12 18 18 H 1.48501 * 109.47291 * 209.99484 * 16 14 12 19 19 H 1.48492 * 109.47304 * 329.99756 * 16 14 12 20 20 C 1.54888 * 110.48670 * 204.03365 * 6 5 3 21 21 C 1.52999 * 109.47134 * 185.16894 * 3 2 1 22 22 C 1.53787 * 113.61799 * 59.99345 * 21 3 2 23 23 C 1.53781 * 87.08163 * 140.06823 * 22 21 3 24 24 C 1.53784 * 87.17049 * 334.52754 * 23 22 21 25 25 H 1.09005 * 109.47040 * 184.36522 * 1 2 3 26 26 H 1.08999 * 109.46977 * 304.36476 * 1 2 3 27 27 H 1.09000 * 109.47378 * 64.36918 * 1 2 3 28 28 H 1.08993 * 109.46796 * 239.99386 * 2 1 3 29 29 H 1.09005 * 109.46985 * 119.99381 * 2 1 3 30 30 H 1.00906 * 110.99783 * 84.05280 * 5 3 2 31 31 H 1.09000 * 110.03250 * 261.57251 * 8 6 5 32 32 H 1.09003 * 110.03270 * 23.00686 * 8 6 5 33 33 H 1.08997 * 110.03237 * 240.71315 * 9 8 6 34 34 H 1.08998 * 110.02761 * 119.28511 * 9 8 6 35 35 H 0.96996 * 120.00395 * 179.97438 * 15 14 12 36 36 H 1.09004 * 110.75806 * 321.69628 * 20 6 5 37 37 H 1.09003 * 110.75596 * 85.07044 * 20 6 5 38 38 H 1.09007 * 112.84684 * 288.80215 * 21 3 2 39 39 H 1.09004 * 113.60865 * 25.51915 * 22 21 3 40 40 H 1.09000 * 113.61223 * 254.61827 * 22 21 3 41 41 H 1.08999 * 113.60986 * 89.11912 * 23 22 21 42 42 H 1.08994 * 113.61397 * 219.93682 * 23 22 21 43 43 H 1.08999 * 113.61355 * 140.02296 * 24 23 22 44 44 H 1.08997 * 113.61331 * 270.92238 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6031 1.9823 -0.8402 5 7 1.6547 2.0981 1.2568 6 6 1.5062 3.5477 1.0704 7 1 2.2169 3.9107 0.3280 8 6 0.0616 3.8930 0.6533 9 6 -0.2974 5.2107 1.3621 10 6 0.9416 5.6205 2.1847 11 1 1.5593 6.3200 1.6214 12 6 0.5246 6.2246 3.5009 13 1 0.7684 5.7238 4.4262 14 6 -0.1679 7.4165 3.5237 15 7 -0.4643 8.0266 2.3969 16 14 -0.6853 8.1650 5.1551 17 1 0.3875 9.0651 5.6492 18 1 -1.9367 8.9424 4.9684 19 1 -0.9181 7.0826 6.1447 20 6 1.7007 4.2900 2.4158 21 6 3.5644 1.4445 -0.1300 22 6 4.0738 0.7776 -1.4187 23 6 5.1172 1.9046 -1.4961 24 6 4.1372 2.7643 -0.6804 25 1 -0.3633 -1.0247 0.0782 26 1 -0.3633 0.5801 0.8483 27 1 -0.3634 0.4445 -0.9265 28 1 1.8933 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 2.3180 1.8939 1.9893 31 1 0.0061 4.0232 -0.4275 32 1 -0.6177 3.1016 0.9699 33 1 -1.1511 5.0588 2.0226 34 1 -0.5272 5.9804 0.6253 35 1 -0.9518 8.8650 2.4130 36 1 1.2541 3.7273 3.2356 37 1 2.7580 4.4765 2.6047 38 1 4.0665 1.0928 0.7714 39 1 3.3509 0.7950 -2.2344 40 1 4.5080 -0.2091 -1.2575 41 1 6.0437 1.6788 -0.9682 42 1 5.2856 2.2750 -2.5072 43 1 4.6226 3.3805 0.0765 44 1 3.4317 3.3239 -1.2946 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449445901.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:31 Heat of formation + Delta-G solvation = -13.275788 kcal Electronic energy + Delta-G solvation = -19359.613180 eV Core-core repulsion = 16696.849105 eV Total energy + Delta-G solvation = -2662.764074 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 4.11 seconds Orbital eigenvalues (eV) -39.58724 -37.28054 -34.91827 -32.62531 -31.14501 -28.05127 -27.64692 -25.74974 -25.47498 -23.58859 -23.01493 -20.59164 -19.84968 -18.95068 -18.75480 -16.33061 -15.71308 -15.54532 -14.83559 -14.64502 -14.38818 -14.19462 -13.31984 -13.05135 -12.59080 -12.48050 -12.38840 -12.25049 -11.76346 -11.70295 -11.44073 -11.02769 -10.93163 -10.85507 -10.71682 -10.55411 -10.49864 -10.47971 -10.24450 -10.04019 -9.94340 -9.78169 -9.43735 -8.99154 -8.64943 -8.31160 -7.84215 -5.94480 -3.96523 3.34300 3.41047 3.44593 4.42371 4.50108 4.54641 4.66386 4.79358 4.82929 5.21584 5.33839 5.37745 5.44997 5.54228 5.62678 5.65023 5.70025 5.78279 5.80963 5.87544 5.94754 5.96941 6.07192 6.12286 6.18041 6.22237 6.30705 6.40775 6.50570 6.60870 6.65209 6.75491 6.88778 6.95982 7.07992 7.28938 7.44464 7.67882 7.78273 7.86623 7.99609 8.10102 8.54601 9.06596 9.67064 11.15500 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.030481 B = 0.004898 C = 0.004549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.377428 B = 5714.745599 C = 6154.246811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.107 4.107 3 C 0.097 3.903 4 H 0.073 0.927 5 N -0.674 5.674 6 C 0.079 3.921 7 H 0.044 0.956 8 C -0.113 4.113 9 C -0.096 4.096 10 C 0.051 3.949 11 H 0.027 0.973 12 C -0.511 4.511 13 H 0.054 0.946 14 C 0.061 3.939 15 N -0.891 5.891 16 Si 0.887 3.113 17 H -0.282 1.282 18 H -0.287 1.287 19 H -0.274 1.274 20 C -0.116 4.116 21 C -0.137 4.137 22 C -0.131 4.131 23 C -0.144 4.144 24 C -0.137 4.137 25 H 0.041 0.959 26 H 0.072 0.928 27 H 0.044 0.956 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.334 0.666 31 H 0.036 0.964 32 H 0.059 0.941 33 H 0.049 0.951 34 H 0.049 0.951 35 H 0.258 0.742 36 H 0.063 0.937 37 H 0.041 0.959 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.062 0.938 41 H 0.076 0.924 42 H 0.063 0.937 43 H 0.066 0.934 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.075 -14.190 -7.382 17.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.145 4.145 3 C -0.014 4.014 4 H 0.092 0.908 5 N -0.303 5.303 6 C -0.030 4.030 7 H 0.062 0.938 8 C -0.151 4.151 9 C -0.135 4.135 10 C 0.033 3.967 11 H 0.045 0.955 12 C -0.549 4.549 13 H 0.072 0.928 14 C -0.140 4.140 15 N -0.530 5.530 16 Si 0.715 3.285 17 H -0.208 1.208 18 H -0.213 1.213 19 H -0.199 1.199 20 C -0.154 4.154 21 C -0.157 4.157 22 C -0.169 4.169 23 C -0.181 4.181 24 C -0.174 4.174 25 H 0.060 0.940 26 H 0.091 0.909 27 H 0.063 0.937 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.152 0.848 31 H 0.054 0.946 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.059 0.941 38 H 0.105 0.895 39 H 0.098 0.902 40 H 0.081 0.919 41 H 0.094 0.906 42 H 0.082 0.918 43 H 0.084 0.916 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 6.287 -14.150 -7.527 17.216 hybrid contribution 0.632 0.830 0.739 1.278 sum 6.919 -13.320 -6.788 16.474 Atomic orbital electron populations 1.21676 0.95565 1.00500 1.02490 1.21444 0.96429 0.95748 1.00867 1.21639 0.91032 0.95240 0.93457 0.90831 1.60708 1.52624 1.10589 1.06409 1.22537 0.96939 0.85390 0.98147 0.93813 1.22262 0.95608 0.99248 0.98009 1.22064 1.00292 0.93003 0.98153 1.19372 0.91898 0.90262 0.95211 0.95498 1.21170 1.35450 1.05920 0.92367 0.92763 1.24975 0.96046 0.96975 0.95984 1.69974 1.40339 1.17193 1.25458 0.86672 0.77998 0.79286 0.84502 1.20822 1.21338 1.19938 1.22738 0.98907 0.98788 0.94947 1.23365 0.97375 0.97116 0.97873 1.22851 0.98401 0.97663 0.98013 1.22827 0.97411 0.97572 1.00321 1.23010 0.98600 0.96198 0.99590 0.94010 0.90949 0.93675 0.92615 0.92422 0.84758 0.94561 0.92251 0.93163 0.93177 0.93195 0.91851 0.94059 0.89539 0.90221 0.91888 0.90564 0.91803 0.91560 0.90054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.85 37.16 0.37 -1.37 16 2 C -0.11 -1.20 5.50 -26.73 -0.15 -1.35 16 3 C 0.10 1.21 1.80 -67.72 -0.12 1.08 16 4 H 0.07 1.02 7.61 -51.93 -0.40 0.63 16 5 N -0.67 -9.91 5.45 -98.01 -0.53 -10.45 16 6 C 0.08 1.39 2.92 -66.05 -0.19 1.20 16 7 H 0.04 0.77 5.75 -51.93 -0.30 0.47 16 8 C -0.11 -2.20 6.50 -25.61 -0.17 -2.36 16 9 C -0.10 -2.30 5.60 -25.61 -0.14 -2.44 16 10 C 0.05 1.29 2.73 -90.10 -0.25 1.05 16 11 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 12 C -0.51 -14.21 8.36 -34.44 -0.29 -14.49 16 13 H 0.05 1.49 7.77 -52.49 -0.41 1.09 16 14 C 0.06 1.73 5.35 -17.82 -0.10 1.64 16 15 N -0.89 -26.06 12.63 55.43 0.70 -25.36 16 16 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 17 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 20 C -0.12 -2.38 5.66 -24.73 -0.14 -2.52 16 21 C -0.14 -1.52 3.18 -89.67 -0.29 -1.81 16 22 C -0.13 -1.26 6.59 -25.92 -0.17 -1.44 16 23 C -0.14 -1.42 8.07 -25.92 -0.21 -1.63 16 24 C -0.14 -1.60 6.16 -25.78 -0.16 -1.76 16 25 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.07 1.01 7.64 -51.93 -0.40 0.61 16 27 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.56 7.27 -51.93 -0.38 0.18 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.33 4.73 8.05 -39.29 -0.32 4.41 16 31 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 1.14 8.04 -51.93 -0.42 0.72 16 33 H 0.05 1.28 7.83 -51.93 -0.41 0.87 16 34 H 0.05 1.27 8.06 -51.93 -0.42 0.85 16 35 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 36 H 0.06 1.34 8.05 -51.93 -0.42 0.92 16 37 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.09 0.96 8.02 -51.93 -0.42 0.54 16 39 H 0.08 0.76 8.10 -51.93 -0.42 0.34 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.08 1.03 7.46 -51.93 -0.39 0.64 16 LS Contribution 336.59 15.07 5.07 5.07 Total: -1.00 -27.83 336.59 -10.22 -38.06 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -8.44 Total: 2.31 kcal Atomic # 6 Polarization: -24.21 SS G_CDS: -2.00 Total: -26.21 kcal Atomic # 7 Polarization: -35.97 SS G_CDS: 0.17 Total: -35.81 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -27.83 -10.22 -38.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449445901.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.780 kcal (2) G-P(sol) polarization free energy of solvation -27.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.11 seconds