Wall clock time and date at job start Mon Mar 30 2020 07:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46994 * 2 1 4 4 H 1.09002 * 109.47048 * 305.16056 * 3 2 1 5 5 N 1.46893 * 109.47532 * 65.16161 * 3 2 1 6 6 C 1.46904 * 111.00202 * 208.00189 * 5 3 2 7 7 H 1.08995 * 110.43213 * 326.58243 * 6 5 3 8 8 C 1.54267 * 110.48105 * 89.26153 * 6 5 3 9 9 C 1.53879 * 106.59673 * 142.28784 * 8 6 5 10 10 C 1.54265 * 106.59806 * 0.02562 * 9 8 6 11 11 H 1.09004 * 110.48539 * 95.06474 * 10 9 8 12 12 C 1.50700 * 110.48409 * 217.70790 * 10 9 8 13 13 H 1.07999 * 119.99338 * 114.77644 * 12 10 9 14 14 C 1.37870 * 120.00351 * 294.77847 * 12 10 9 15 15 N 1.31516 * 120.00096 * 359.97438 * 14 12 10 16 16 Si 1.86797 * 120.00108 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.47011 * 89.99773 * 16 14 12 18 18 H 1.48501 * 109.47291 * 209.99484 * 16 14 12 19 19 H 1.48492 * 109.47304 * 329.99756 * 16 14 12 20 20 C 1.54888 * 110.48670 * 204.03365 * 6 5 3 21 21 C 1.52999 * 109.47134 * 185.16894 * 3 2 1 22 22 C 1.53787 * 113.61799 * 59.99345 * 21 3 2 23 23 C 1.53781 * 87.08163 * 140.06823 * 22 21 3 24 24 C 1.53784 * 87.17049 * 334.52754 * 23 22 21 25 25 H 1.09005 * 109.47040 * 184.36522 * 1 2 3 26 26 H 1.08999 * 109.46977 * 304.36476 * 1 2 3 27 27 H 1.09000 * 109.47378 * 64.36918 * 1 2 3 28 28 H 1.08993 * 109.46796 * 239.99386 * 2 1 3 29 29 H 1.09005 * 109.46985 * 119.99381 * 2 1 3 30 30 H 1.00906 * 110.99783 * 84.05280 * 5 3 2 31 31 H 1.09000 * 110.03250 * 261.57251 * 8 6 5 32 32 H 1.09003 * 110.03270 * 23.00686 * 8 6 5 33 33 H 1.08997 * 110.03237 * 240.71315 * 9 8 6 34 34 H 1.08998 * 110.02761 * 119.28511 * 9 8 6 35 35 H 0.96996 * 120.00395 * 179.97438 * 15 14 12 36 36 H 1.09004 * 110.75806 * 321.69628 * 20 6 5 37 37 H 1.09003 * 110.75596 * 85.07044 * 20 6 5 38 38 H 1.09007 * 112.84684 * 288.80215 * 21 3 2 39 39 H 1.09004 * 113.60865 * 25.51915 * 22 21 3 40 40 H 1.09000 * 113.61223 * 254.61827 * 22 21 3 41 41 H 1.08999 * 113.60986 * 89.11912 * 23 22 21 42 42 H 1.08994 * 113.61397 * 219.93682 * 23 22 21 43 43 H 1.08999 * 113.61355 * 140.02296 * 24 23 22 44 44 H 1.08997 * 113.61331 * 270.92238 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6031 1.9823 -0.8402 5 7 1.6547 2.0981 1.2568 6 6 1.5062 3.5477 1.0704 7 1 2.2169 3.9107 0.3280 8 6 0.0616 3.8930 0.6533 9 6 -0.2974 5.2107 1.3621 10 6 0.9416 5.6205 2.1847 11 1 1.5593 6.3200 1.6214 12 6 0.5246 6.2246 3.5009 13 1 0.7684 5.7238 4.4262 14 6 -0.1679 7.4165 3.5237 15 7 -0.4643 8.0266 2.3969 16 14 -0.6853 8.1650 5.1551 17 1 0.3875 9.0651 5.6492 18 1 -1.9367 8.9424 4.9684 19 1 -0.9181 7.0826 6.1447 20 6 1.7007 4.2900 2.4158 21 6 3.5644 1.4445 -0.1300 22 6 4.0738 0.7776 -1.4187 23 6 5.1172 1.9046 -1.4961 24 6 4.1372 2.7643 -0.6804 25 1 -0.3633 -1.0247 0.0782 26 1 -0.3633 0.5801 0.8483 27 1 -0.3634 0.4445 -0.9265 28 1 1.8933 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 2.3180 1.8939 1.9893 31 1 0.0061 4.0232 -0.4275 32 1 -0.6177 3.1016 0.9699 33 1 -1.1511 5.0588 2.0226 34 1 -0.5272 5.9804 0.6253 35 1 -0.9518 8.8650 2.4130 36 1 1.2541 3.7273 3.2356 37 1 2.7580 4.4765 2.6047 38 1 4.0665 1.0928 0.7714 39 1 3.3509 0.7950 -2.2344 40 1 4.5080 -0.2091 -1.2575 41 1 6.0437 1.6788 -0.9682 42 1 5.2856 2.2750 -2.5072 43 1 4.6226 3.3805 0.0765 44 1 3.4317 3.3239 -1.2946 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449445901.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:30 Heat of formation + Delta-G solvation = -27.274942 kcal Electronic energy + Delta-G solvation = -19360.220229 eV Core-core repulsion = 16696.849105 eV Total energy + Delta-G solvation = -2663.371123 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -40.59542 -38.80628 -36.15649 -34.46581 -32.56413 -29.89553 -28.93474 -27.14024 -26.44266 -25.40583 -23.99562 -21.73711 -21.15807 -20.53712 -20.10148 -18.30993 -16.92468 -16.66316 -16.53315 -16.08151 -15.75772 -15.41127 -14.64395 -14.33892 -14.04203 -13.94732 -13.52092 -13.35844 -13.29754 -12.99607 -12.76211 -12.61942 -12.46891 -12.31233 -12.09426 -12.02627 -11.63469 -11.61688 -11.51206 -11.44483 -11.35575 -11.26633 -10.98198 -10.75383 -10.73137 -10.46699 -9.04765 -8.11207 -6.20639 1.40617 1.41381 1.51888 2.44052 3.19856 3.32003 3.66083 3.78142 3.86637 4.00769 4.04071 4.15614 4.34868 4.38445 4.41104 4.56773 4.63668 4.74971 4.84738 4.87087 4.89814 4.94346 4.99350 5.05120 5.05944 5.10211 5.14016 5.18484 5.21933 5.24744 5.30898 5.36991 5.42908 5.46906 5.55055 5.63742 5.66895 5.68869 5.92571 5.99951 6.36738 6.43568 6.67143 6.91152 7.46743 8.98291 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.030481 B = 0.004898 C = 0.004549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.377428 B = 5714.745599 C = 6154.246811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.101 4.101 3 C 0.099 3.901 4 H 0.061 0.939 5 N -0.673 5.673 6 C 0.097 3.903 7 H 0.047 0.953 8 C -0.102 4.102 9 C -0.087 4.087 10 C 0.041 3.959 11 H -0.005 1.005 12 C -0.530 4.530 13 H 0.053 0.947 14 C 0.010 3.990 15 N -0.923 5.923 16 Si 0.953 3.047 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.267 1.267 20 C -0.104 4.104 21 C -0.134 4.134 22 C -0.122 4.122 23 C -0.138 4.138 24 C -0.147 4.147 25 H 0.055 0.945 26 H 0.049 0.951 27 H 0.042 0.958 28 H 0.074 0.926 29 H 0.062 0.938 30 H 0.341 0.659 31 H 0.048 0.952 32 H 0.064 0.936 33 H 0.026 0.974 34 H 0.024 0.976 35 H 0.259 0.741 36 H 0.059 0.941 37 H 0.049 0.951 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.084 0.916 42 H 0.068 0.932 43 H 0.053 0.947 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.928 -16.169 -7.356 19.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.139 4.139 3 C -0.011 4.011 4 H 0.079 0.921 5 N -0.303 5.303 6 C -0.012 4.012 7 H 0.065 0.935 8 C -0.140 4.140 9 C -0.126 4.126 10 C 0.022 3.978 11 H 0.013 0.987 12 C -0.568 4.568 13 H 0.071 0.929 14 C -0.188 4.188 15 N -0.562 5.562 16 Si 0.778 3.222 17 H -0.201 1.201 18 H -0.210 1.210 19 H -0.192 1.192 20 C -0.142 4.142 21 C -0.154 4.154 22 C -0.160 4.160 23 C -0.175 4.175 24 C -0.185 4.185 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.061 0.939 28 H 0.092 0.908 29 H 0.081 0.919 30 H 0.160 0.840 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.044 0.956 34 H 0.043 0.957 35 H 0.068 0.932 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.110 0.890 39 H 0.100 0.900 40 H 0.096 0.904 41 H 0.103 0.897 42 H 0.087 0.913 43 H 0.072 0.928 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.153 -16.149 -7.499 19.188 hybrid contribution 0.367 1.464 0.713 1.669 sum 7.521 -14.685 -6.786 17.840 Atomic orbital electron populations 1.21654 0.96194 1.00956 1.01343 1.21411 0.95769 0.94717 1.01980 1.21668 0.92143 0.95659 0.91651 0.92098 1.60626 1.53446 1.08314 1.07917 1.22201 0.95602 0.87215 0.96204 0.93512 1.22129 0.96973 0.96730 0.98212 1.21862 0.98899 0.94664 0.97174 1.19369 0.92507 0.91829 0.94078 0.98673 1.21553 1.35496 1.06421 0.93348 0.92890 1.25779 0.96099 0.97518 0.99431 1.70104 1.41014 1.17542 1.27547 0.85637 0.77671 0.78522 0.80343 1.20059 1.21023 1.19160 1.22549 0.98594 0.96576 0.96488 1.23321 0.96116 0.96984 0.98974 1.22814 0.98099 0.98196 0.96905 1.22815 0.97429 0.96946 1.00319 1.23033 0.99208 0.96504 0.99708 0.92619 0.93151 0.93913 0.90759 0.91945 0.83990 0.93330 0.91726 0.95552 0.95749 0.93191 0.92248 0.93201 0.89014 0.89987 0.90352 0.89696 0.91297 0.92799 0.91367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 9.85 71.98 0.71 -2.45 16 2 C -0.10 -1.98 5.50 30.59 0.17 -1.81 16 3 C 0.10 2.26 1.80 44.92 0.08 2.34 16 4 H 0.06 1.58 7.61 -2.39 -0.02 1.56 16 5 N -0.67 -18.75 5.45 -464.00 -2.53 -21.28 16 6 C 0.10 3.38 2.92 45.99 0.13 3.51 16 7 H 0.05 1.62 5.75 -2.39 -0.01 1.61 16 8 C -0.10 -3.97 6.50 31.32 0.20 -3.76 16 9 C -0.09 -4.30 5.60 31.32 0.18 -4.13 16 10 C 0.04 2.13 2.73 -10.46 -0.03 2.10 16 11 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 16 12 C -0.53 -30.10 8.36 25.60 0.21 -29.89 16 13 H 0.05 2.95 7.77 -2.91 -0.02 2.92 16 14 C 0.01 0.58 5.35 84.65 0.45 1.03 16 15 N -0.92 -55.44 12.63 21.45 0.27 -55.17 16 16 Si 0.95 44.73 29.54 68.60 2.03 46.76 16 17 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 18 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 19 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 20 C -0.10 -4.28 5.66 31.89 0.18 -4.10 16 21 C -0.13 -2.65 3.18 -10.18 -0.03 -2.69 16 22 C -0.12 -1.98 6.59 31.12 0.20 -1.77 16 23 C -0.14 -2.39 8.07 31.12 0.25 -2.14 16 24 C -0.15 -3.26 6.16 31.21 0.19 -3.07 16 25 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 26 H 0.05 1.33 7.64 -2.39 -0.02 1.31 16 27 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.07 1.23 7.27 -2.39 -0.02 1.21 16 29 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 30 H 0.34 8.96 8.05 -89.69 -0.72 8.24 16 31 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.06 2.45 8.04 -2.39 -0.02 2.43 16 33 H 0.03 1.37 7.83 -2.39 -0.02 1.36 16 34 H 0.02 1.27 8.06 -2.39 -0.02 1.26 16 35 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 36 H 0.06 2.49 8.05 -2.38 -0.02 2.47 16 37 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.09 1.77 8.02 -2.38 -0.02 1.75 16 39 H 0.08 1.31 8.10 -2.38 -0.02 1.30 16 40 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.07 1.68 7.46 -2.39 -0.02 1.67 16 Total: -1.00 -60.71 336.59 2.88 -57.82 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: 0.21 Total: 18.68 kcal Atomic # 6 Polarization: -49.73 SS G_CDS: 2.91 Total: -46.82 kcal Atomic # 7 Polarization: -74.18 SS G_CDS: -2.26 Total: -76.44 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -60.71 2.88 -57.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449445901.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.548 kcal (2) G-P(sol) polarization free energy of solvation -60.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds