Wall clock time and date at job start Mon Mar 30 2020 07:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50699 * 119.99848 * 2 1 4 4 C 1.53001 * 109.47349 * 124.99889 * 3 2 1 5 5 C 1.52995 * 109.47732 * 180.02562 * 4 3 2 6 6 H 1.08997 * 109.47227 * 54.95516 * 5 4 3 7 7 C 1.52999 * 109.47814 * 174.96099 * 5 4 3 8 8 C 1.52991 * 109.47505 * 183.41207 * 7 5 4 9 9 N 1.46902 * 109.46886 * 294.95883 * 5 4 3 10 10 C 1.46897 * 111.00353 * 306.25443 * 9 5 4 11 11 H 1.09003 * 110.43198 * 341.62585 * 10 9 5 12 12 C 1.54268 * 110.48897 * 104.16237 * 10 9 5 13 13 C 1.53874 * 106.59634 * 142.29110 * 12 10 9 14 14 C 1.54268 * 106.60004 * 0.02562 * 13 12 10 15 15 H 1.08997 * 110.48675 * 95.20051 * 14 13 12 16 16 C 1.50700 * 110.48158 * 217.71348 * 14 13 12 17 17 H 1.07997 * 120.00071 * 118.55237 * 16 14 13 18 18 C 1.37882 * 120.00151 * 298.54101 * 16 14 13 19 19 N 1.31515 * 119.99731 * 0.02562 * 18 16 14 20 20 Si 1.86795 * 120.00037 * 180.28080 * 18 16 14 21 21 H 1.48498 * 109.47252 * 269.72302 * 20 18 16 22 22 H 1.48497 * 109.47241 * 29.72848 * 20 18 16 23 23 H 1.48499 * 109.47030 * 149.72589 * 20 18 16 24 24 C 1.54888 * 104.19480 * 336.38623 * 14 13 12 25 25 H 1.08001 * 120.00169 * 0.02562 * 1 2 3 26 26 H 1.08001 * 120.00202 * 179.97438 * 1 2 3 27 27 H 1.08001 * 120.00169 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47451 * 4.99825 * 3 2 1 29 29 H 1.09003 * 109.47352 * 244.99397 * 3 2 1 30 30 H 1.09004 * 109.47298 * 59.99829 * 4 3 2 31 31 H 1.09002 * 109.47012 * 300.00019 * 4 3 2 32 32 H 1.09003 * 109.46706 * 303.41251 * 7 5 4 33 33 H 1.09002 * 109.47072 * 63.40549 * 7 5 4 34 34 H 1.09004 * 109.47140 * 304.65191 * 8 7 5 35 35 H 1.08993 * 109.47425 * 64.65277 * 8 7 5 36 36 H 1.08999 * 109.47241 * 184.65580 * 8 7 5 37 37 H 1.00904 * 111.00146 * 70.20449 * 9 5 4 38 38 H 1.09001 * 110.03013 * 23.00841 * 12 10 9 39 39 H 1.09002 * 110.07417 * 261.59917 * 12 10 9 40 40 H 1.09005 * 110.03077 * 240.71516 * 13 12 10 41 41 H 1.09004 * 110.07129 * 119.31434 * 13 12 10 42 42 H 0.96996 * 119.99996 * 179.97438 * 19 18 16 43 43 H 1.09000 * 110.75300 * 156.25734 * 24 14 13 44 44 H 1.08997 * 110.76050 * 279.63327 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0350 1.3332 1.1816 5 6 3.7995 2.6584 1.1821 6 1 3.0910 3.4867 1.1815 7 6 4.6784 2.7400 2.4318 8 6 5.3776 4.1000 2.4758 9 7 4.6448 2.7364 -0.0168 10 6 5.5121 1.5560 -0.1273 11 1 5.5866 1.0472 0.8339 12 6 4.9784 0.5930 -1.2078 13 6 6.2092 0.0132 -1.9265 14 6 7.4480 0.6436 -1.2572 15 1 7.8385 -0.0144 -0.4809 16 6 8.5116 0.9346 -2.2844 17 1 8.8403 1.9502 -2.4486 18 6 9.0652 -0.0957 -3.0146 19 7 8.6647 -1.3324 -2.8149 20 14 10.3891 0.2641 -4.2822 21 1 9.7557 0.5191 -5.6009 22 1 11.1621 1.4613 -3.8646 23 1 11.3023 -0.9020 -4.3890 24 6 6.9167 1.9606 -0.6390 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3585 2.1317 0.0895 29 1 2.6213 1.4026 -0.9313 30 1 3.7400 0.5066 1.0921 31 1 2.4772 1.2357 2.1130 32 1 4.0583 2.6213 3.3204 33 1 5.4263 1.9476 2.4023 34 1 5.9318 4.2538 1.5499 35 1 4.6330 4.8879 2.5886 36 1 6.0663 4.1274 3.3202 37 1 4.0841 2.8521 -0.8477 38 1 4.3537 1.1365 -1.9167 39 1 4.4047 -0.2093 -0.7436 40 1 6.1818 0.2753 -2.9843 41 1 6.2338 -1.0705 -1.8113 42 1 9.0539 -2.0572 -3.3287 43 1 7.5508 2.2829 0.1869 44 1 6.8414 2.7403 -1.3968 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449447284.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:07 Heat of formation + Delta-G solvation = -12.994779 kcal Electronic energy + Delta-G solvation = -19353.706867 eV Core-core repulsion = 16690.954978 eV Total energy + Delta-G solvation = -2662.751889 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.02449 -36.16226 -34.70509 -32.56062 -31.16714 -29.94367 -28.00261 -26.59631 -25.39458 -23.60782 -22.12554 -20.50382 -19.70912 -19.01579 -18.90881 -16.43953 -16.12932 -15.34503 -14.59812 -14.33924 -14.29844 -13.92963 -13.85213 -13.13696 -12.87531 -12.62881 -12.31913 -12.30760 -11.85183 -11.55823 -11.34369 -11.16869 -11.02793 -10.86382 -10.83211 -10.70906 -10.44963 -10.37152 -10.32940 -9.94853 -9.67523 -9.47626 -9.31438 -9.05327 -8.64162 -8.31655 -7.85127 -5.94278 -3.96233 2.23368 3.34318 3.41033 3.44752 4.47702 4.56026 4.72397 5.00354 5.02964 5.18481 5.35040 5.38362 5.40473 5.52925 5.56979 5.68594 5.70987 5.74087 5.84467 5.91908 5.98826 6.03467 6.10519 6.18750 6.22051 6.34382 6.48845 6.55762 6.61318 6.62199 6.73030 6.79969 6.81744 6.96365 7.14017 7.25106 7.43691 7.65370 7.79794 7.82809 7.99644 8.11190 8.55882 9.07243 9.67465 11.15337 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.022366 B = 0.005490 C = 0.004618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.606833 B = 5098.511868 C = 6062.311836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.142 4.142 3 C -0.099 4.099 4 C -0.151 4.151 5 C 0.087 3.913 6 H 0.073 0.927 7 C -0.115 4.115 8 C -0.143 4.143 9 N -0.674 5.674 10 C 0.080 3.920 11 H 0.070 0.930 12 C -0.146 4.146 13 C -0.093 4.093 14 C 0.046 3.954 15 H 0.024 0.976 16 C -0.509 4.509 17 H 0.055 0.945 18 C 0.061 3.939 19 N -0.892 5.892 20 Si 0.887 3.113 21 H -0.282 1.282 22 H -0.274 1.274 23 H -0.288 1.288 24 C -0.098 4.098 25 H 0.093 0.907 26 H 0.094 0.906 27 H 0.107 0.893 28 H 0.062 0.938 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.043 0.957 36 H 0.042 0.958 37 H 0.336 0.664 38 H 0.048 0.952 39 H 0.044 0.956 40 H 0.049 0.951 41 H 0.051 0.949 42 H 0.258 0.742 43 H 0.043 0.957 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.168 5.376 8.021 16.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.160 4.160 3 C -0.136 4.136 4 C -0.190 4.190 5 C -0.024 4.024 6 H 0.091 0.909 7 C -0.153 4.153 8 C -0.200 4.200 9 N -0.304 5.304 10 C -0.030 4.030 11 H 0.088 0.912 12 C -0.185 4.185 13 C -0.131 4.131 14 C 0.028 3.972 15 H 0.042 0.958 16 C -0.548 4.548 17 H 0.073 0.927 18 C -0.140 4.140 19 N -0.531 5.531 20 Si 0.715 3.285 21 H -0.208 1.208 22 H -0.199 1.199 23 H -0.214 1.214 24 C -0.136 4.136 25 H 0.111 0.889 26 H 0.112 0.888 27 H 0.125 0.875 28 H 0.081 0.919 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.155 0.845 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.067 0.933 43 H 0.062 0.938 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.649 5.598 8.272 16.117 hybrid contribution -0.044 -0.809 -1.083 1.352 sum -12.694 4.789 7.189 15.354 Atomic orbital electron populations 1.23778 0.95950 1.01478 1.03112 1.23019 0.95948 0.98844 0.98178 1.20867 0.98065 0.94990 0.99707 1.22391 0.98550 1.00193 0.97896 1.21621 0.93424 0.95485 0.91829 0.90886 1.21574 0.98835 0.98806 0.96063 1.21643 0.99986 0.96086 1.02307 1.60792 1.23700 1.41391 1.04510 1.22562 0.94207 0.88647 0.97550 0.91238 1.22976 0.99311 0.98411 0.97753 1.22001 0.92940 0.99411 0.98776 1.19444 0.92483 0.90722 0.94598 0.95751 1.21193 1.20438 0.93265 1.19873 0.92704 1.24981 0.96715 0.95162 0.97179 1.69978 1.43057 0.98905 1.41125 0.86675 0.82021 0.77763 0.82018 1.20828 1.19937 1.21381 1.22524 0.92611 0.99786 0.98675 0.88868 0.88810 0.87461 0.91943 0.90374 0.90867 0.92167 0.92670 0.91706 0.90812 0.93792 0.93857 0.84490 0.93367 0.93766 0.93230 0.93018 0.93251 0.93790 0.92282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.08 14.32 29.01 0.42 -1.67 16 2 C -0.14 -1.60 9.52 -36.03 -0.34 -1.94 16 3 C -0.10 -1.12 5.17 -27.88 -0.14 -1.26 16 4 C -0.15 -1.77 4.13 -26.73 -0.11 -1.88 16 5 C 0.09 1.05 2.52 -67.71 -0.17 0.88 16 6 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 7 C -0.11 -1.40 5.32 -26.74 -0.14 -1.54 16 8 C -0.14 -1.74 9.85 37.15 0.37 -1.37 16 9 N -0.67 -9.62 5.55 -98.02 -0.54 -10.16 16 10 C 0.08 1.35 2.17 -66.07 -0.14 1.21 16 11 H 0.07 1.20 5.11 -51.93 -0.27 0.93 16 12 C -0.15 -2.62 4.64 -25.61 -0.12 -2.74 16 13 C -0.09 -2.15 5.40 -25.61 -0.14 -2.29 16 14 C 0.05 1.15 2.79 -90.11 -0.25 0.90 16 15 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 16 C -0.51 -14.12 8.40 -34.44 -0.29 -14.41 16 17 H 0.05 1.51 7.77 -52.49 -0.41 1.10 16 18 C 0.06 1.70 5.33 -17.82 -0.09 1.61 16 19 N -0.89 -25.91 12.35 55.43 0.68 -25.22 16 20 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 22 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 C -0.10 -2.03 5.96 -24.75 -0.15 -2.17 16 25 H 0.09 0.86 7.84 -52.49 -0.41 0.45 16 26 H 0.09 0.85 8.06 -52.49 -0.42 0.43 16 27 H 0.11 1.25 8.06 -52.49 -0.42 0.82 16 28 H 0.06 0.64 7.79 -51.93 -0.40 0.24 16 29 H 0.08 0.96 4.89 -51.93 -0.25 0.71 16 30 H 0.07 0.98 5.33 -51.93 -0.28 0.71 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.89 6.35 -51.93 -0.33 0.56 16 34 H 0.07 1.04 7.57 -51.93 -0.39 0.64 16 35 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.34 4.65 6.72 -39.29 -0.26 4.38 16 38 H 0.05 0.82 6.46 -51.93 -0.34 0.48 16 39 H 0.04 0.75 7.21 -51.93 -0.37 0.38 16 40 H 0.05 1.24 7.83 -51.93 -0.41 0.84 16 41 H 0.05 1.29 7.93 -51.93 -0.41 0.88 16 42 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 43 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.06 1.27 8.05 -51.93 -0.42 0.85 16 LS Contribution 332.56 15.07 5.01 5.01 Total: -1.00 -27.70 332.56 -9.08 -36.77 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -7.89 Total: 3.74 kcal Atomic # 6 Polarization: -25.36 SS G_CDS: -1.31 Total: -26.68 kcal Atomic # 7 Polarization: -35.53 SS G_CDS: 0.14 Total: -35.39 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -27.70 -9.08 -36.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449447284.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.780 kcal (2) G-P(sol) polarization free energy of solvation -27.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds