Wall clock time and date at job start Mon Mar 30 2020 07:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50699 * 119.99848 * 2 1 4 4 C 1.53001 * 109.47349 * 124.99889 * 3 2 1 5 5 C 1.52995 * 109.47732 * 180.02562 * 4 3 2 6 6 H 1.08997 * 109.47227 * 54.95516 * 5 4 3 7 7 C 1.52999 * 109.47814 * 174.96099 * 5 4 3 8 8 C 1.52991 * 109.47505 * 183.41207 * 7 5 4 9 9 N 1.46902 * 109.46886 * 294.95883 * 5 4 3 10 10 C 1.46897 * 111.00353 * 306.25443 * 9 5 4 11 11 H 1.09003 * 110.43198 * 341.62585 * 10 9 5 12 12 C 1.54268 * 110.48897 * 104.16237 * 10 9 5 13 13 C 1.53874 * 106.59634 * 142.29110 * 12 10 9 14 14 C 1.54268 * 106.60004 * 0.02562 * 13 12 10 15 15 H 1.08997 * 110.48675 * 95.20051 * 14 13 12 16 16 C 1.50700 * 110.48158 * 217.71348 * 14 13 12 17 17 H 1.07997 * 120.00071 * 118.55237 * 16 14 13 18 18 C 1.37882 * 120.00151 * 298.54101 * 16 14 13 19 19 N 1.31515 * 119.99731 * 0.02562 * 18 16 14 20 20 Si 1.86795 * 120.00037 * 180.28080 * 18 16 14 21 21 H 1.48498 * 109.47252 * 269.72302 * 20 18 16 22 22 H 1.48497 * 109.47241 * 29.72848 * 20 18 16 23 23 H 1.48499 * 109.47030 * 149.72589 * 20 18 16 24 24 C 1.54888 * 104.19480 * 336.38623 * 14 13 12 25 25 H 1.08001 * 120.00169 * 0.02562 * 1 2 3 26 26 H 1.08001 * 120.00202 * 179.97438 * 1 2 3 27 27 H 1.08001 * 120.00169 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47451 * 4.99825 * 3 2 1 29 29 H 1.09003 * 109.47352 * 244.99397 * 3 2 1 30 30 H 1.09004 * 109.47298 * 59.99829 * 4 3 2 31 31 H 1.09002 * 109.47012 * 300.00019 * 4 3 2 32 32 H 1.09003 * 109.46706 * 303.41251 * 7 5 4 33 33 H 1.09002 * 109.47072 * 63.40549 * 7 5 4 34 34 H 1.09004 * 109.47140 * 304.65191 * 8 7 5 35 35 H 1.08993 * 109.47425 * 64.65277 * 8 7 5 36 36 H 1.08999 * 109.47241 * 184.65580 * 8 7 5 37 37 H 1.00904 * 111.00146 * 70.20449 * 9 5 4 38 38 H 1.09001 * 110.03013 * 23.00841 * 12 10 9 39 39 H 1.09002 * 110.07417 * 261.59917 * 12 10 9 40 40 H 1.09005 * 110.03077 * 240.71516 * 13 12 10 41 41 H 1.09004 * 110.07129 * 119.31434 * 13 12 10 42 42 H 0.96996 * 119.99996 * 179.97438 * 19 18 16 43 43 H 1.09000 * 110.75300 * 156.25734 * 24 14 13 44 44 H 1.08997 * 110.76050 * 279.63327 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0350 1.3332 1.1816 5 6 3.7995 2.6584 1.1821 6 1 3.0910 3.4867 1.1815 7 6 4.6784 2.7400 2.4318 8 6 5.3776 4.1000 2.4758 9 7 4.6448 2.7364 -0.0168 10 6 5.5121 1.5560 -0.1273 11 1 5.5866 1.0472 0.8339 12 6 4.9784 0.5930 -1.2078 13 6 6.2092 0.0132 -1.9265 14 6 7.4480 0.6436 -1.2572 15 1 7.8385 -0.0144 -0.4809 16 6 8.5116 0.9346 -2.2844 17 1 8.8403 1.9502 -2.4486 18 6 9.0652 -0.0957 -3.0146 19 7 8.6647 -1.3324 -2.8149 20 14 10.3891 0.2641 -4.2822 21 1 9.7557 0.5191 -5.6009 22 1 11.1621 1.4613 -3.8646 23 1 11.3023 -0.9020 -4.3890 24 6 6.9167 1.9606 -0.6390 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3585 2.1317 0.0895 29 1 2.6213 1.4026 -0.9313 30 1 3.7400 0.5066 1.0921 31 1 2.4772 1.2357 2.1130 32 1 4.0583 2.6213 3.3204 33 1 5.4263 1.9476 2.4023 34 1 5.9318 4.2538 1.5499 35 1 4.6330 4.8879 2.5886 36 1 6.0663 4.1274 3.3202 37 1 4.0841 2.8521 -0.8477 38 1 4.3537 1.1365 -1.9167 39 1 4.4047 -0.2093 -0.7436 40 1 6.1818 0.2753 -2.9843 41 1 6.2338 -1.0705 -1.8113 42 1 9.0539 -2.0572 -3.3287 43 1 7.5508 2.2829 0.1869 44 1 6.8414 2.7403 -1.3968 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449447284.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:06 Heat of formation + Delta-G solvation = -27.217951 kcal Electronic energy + Delta-G solvation = -19354.323630 eV Core-core repulsion = 16690.954978 eV Total energy + Delta-G solvation = -2663.368652 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.29710 -37.63887 -35.66431 -34.45679 -32.42605 -31.03975 -29.78975 -28.13535 -26.58396 -25.42615 -23.03463 -21.81917 -20.93662 -20.56546 -20.16081 -18.26932 -17.55837 -16.57601 -16.24853 -15.87864 -15.43548 -15.25368 -14.82888 -14.44361 -14.18437 -13.99218 -13.76507 -13.49470 -13.34446 -12.98367 -12.79872 -12.68959 -12.42422 -12.27641 -12.20145 -11.95964 -11.81025 -11.68233 -11.58647 -11.36879 -11.31246 -11.08462 -10.92776 -10.70979 -10.46322 -10.16621 -9.08024 -8.10159 -6.19707 1.40572 1.41067 1.42494 1.51714 2.44344 3.20205 3.39624 3.78926 4.02774 4.07540 4.16836 4.18254 4.27145 4.35978 4.50597 4.52202 4.62855 4.70959 4.77467 4.82806 4.89927 4.98781 5.04915 5.07567 5.08526 5.12365 5.19272 5.24934 5.26883 5.30625 5.37747 5.48219 5.52148 5.54125 5.65877 5.69104 5.78066 5.91392 5.96982 6.02455 6.35439 6.45623 6.69288 6.92327 7.47636 8.98511 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.022366 B = 0.005490 C = 0.004618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.606833 B = 5098.511868 C = 6062.311836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.164 4.164 3 C -0.094 4.094 4 C -0.145 4.145 5 C 0.090 3.910 6 H 0.093 0.907 7 C -0.116 4.116 8 C -0.140 4.140 9 N -0.673 5.673 10 C 0.101 3.899 11 H 0.071 0.929 12 C -0.130 4.130 13 C -0.083 4.083 14 C 0.037 3.963 15 H -0.008 1.008 16 C -0.530 4.530 17 H 0.051 0.949 18 C 0.011 3.989 19 N -0.921 5.921 20 Si 0.951 3.049 21 H -0.275 1.275 22 H -0.268 1.268 23 H -0.284 1.284 24 C -0.088 4.088 25 H 0.105 0.895 26 H 0.102 0.898 27 H 0.097 0.903 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.045 0.955 34 H 0.051 0.949 35 H 0.058 0.942 36 H 0.046 0.954 37 H 0.343 0.657 38 H 0.065 0.935 39 H 0.057 0.943 40 H 0.024 0.976 41 H 0.024 0.976 42 H 0.259 0.741 43 H 0.042 0.958 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.814 6.734 8.479 18.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.182 4.182 3 C -0.131 4.131 4 C -0.184 4.184 5 C -0.020 4.020 6 H 0.111 0.889 7 C -0.153 4.153 8 C -0.197 4.197 9 N -0.303 5.303 10 C -0.009 4.009 11 H 0.089 0.911 12 C -0.169 4.169 13 C -0.122 4.122 14 C 0.018 3.982 15 H 0.010 0.990 16 C -0.568 4.568 17 H 0.069 0.931 18 C -0.188 4.188 19 N -0.561 5.561 20 Si 0.777 3.223 21 H -0.201 1.201 22 H -0.192 1.192 23 H -0.210 1.210 24 C -0.127 4.127 25 H 0.124 0.876 26 H 0.120 0.880 27 H 0.115 0.885 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.162 0.838 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.043 0.957 41 H 0.042 0.958 42 H 0.068 0.932 43 H 0.061 0.939 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.307 6.972 8.735 18.155 hybrid contribution 0.443 -1.238 -1.186 1.771 sum -13.865 5.734 7.549 16.796 Atomic orbital electron populations 1.23972 0.95587 1.02518 1.01041 1.23020 0.96503 0.98557 1.00101 1.20813 0.98060 0.95514 0.98758 1.22307 0.98271 0.98956 0.98849 1.21697 0.93300 0.96481 0.90507 0.88929 1.21596 0.98680 0.98077 0.96985 1.21602 1.00257 0.96579 1.01294 1.60665 1.24381 1.39438 1.05816 1.22180 0.92645 0.89208 0.96883 0.91122 1.22834 0.97107 0.98999 0.97915 1.21781 0.94953 0.97774 0.97715 1.19443 0.92748 0.92461 0.93575 0.98985 1.21568 1.21385 0.93184 1.20656 0.93084 1.25763 0.98876 0.94969 0.99154 1.70108 1.44207 0.99691 1.42104 0.85658 0.79333 0.77751 0.79558 1.20119 1.19232 1.20985 1.22350 0.94919 0.97244 0.98171 0.87647 0.87974 0.88476 0.90467 0.91558 0.92845 0.90931 0.90678 0.93654 0.93027 0.92291 0.93486 0.83763 0.91684 0.92422 0.95716 0.95751 0.93250 0.93935 0.92937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.42 14.32 67.78 0.97 -2.45 16 2 C -0.16 -3.38 9.52 25.65 0.24 -3.14 16 3 C -0.09 -1.88 5.17 29.85 0.15 -1.73 16 4 C -0.14 -3.04 4.13 30.59 0.13 -2.91 16 5 C 0.09 1.93 2.52 44.91 0.11 2.05 16 6 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 7 C -0.12 -2.55 5.32 30.59 0.16 -2.39 16 8 C -0.14 -3.12 9.85 71.98 0.71 -2.41 16 9 N -0.67 -17.96 5.55 -464.03 -2.58 -20.54 16 10 C 0.10 3.38 2.17 45.98 0.10 3.48 16 11 H 0.07 2.40 5.11 -2.39 -0.01 2.39 16 12 C -0.13 -4.63 4.64 31.32 0.15 -4.48 16 13 C -0.08 -4.01 5.40 31.32 0.17 -3.84 16 14 C 0.04 1.89 2.79 -10.47 -0.03 1.86 16 15 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 16 C -0.53 -30.18 8.40 25.60 0.22 -29.97 16 17 H 0.05 2.87 7.77 -2.91 -0.02 2.85 16 18 C 0.01 0.61 5.33 84.66 0.45 1.06 16 19 N -0.92 -55.11 12.35 21.45 0.26 -54.84 16 20 Si 0.95 44.79 29.54 68.60 2.03 46.81 16 21 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 22 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 23 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 24 C -0.09 -3.72 5.96 31.88 0.19 -3.53 16 25 H 0.11 1.59 7.84 -2.91 -0.02 1.57 16 26 H 0.10 1.60 8.06 -2.91 -0.02 1.58 16 27 H 0.10 2.17 8.06 -2.91 -0.02 2.15 16 28 H 0.08 1.32 7.79 -2.39 -0.02 1.30 16 29 H 0.07 1.48 4.89 -2.39 -0.01 1.47 16 30 H 0.05 1.35 5.33 -2.38 -0.01 1.34 16 31 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.04 1.18 6.35 -2.39 -0.02 1.17 16 34 H 0.05 1.38 7.57 -2.39 -0.02 1.36 16 35 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.34 8.65 6.72 -89.69 -0.60 8.04 16 38 H 0.06 2.12 6.46 -2.39 -0.02 2.10 16 39 H 0.06 1.93 7.21 -2.39 -0.02 1.91 16 40 H 0.02 1.26 7.83 -2.38 -0.02 1.24 16 41 H 0.02 1.25 7.93 -2.38 -0.02 1.24 16 42 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 43 H 0.04 1.76 8.14 -2.39 -0.02 1.75 16 44 H 0.05 2.26 8.05 -2.39 -0.02 2.24 16 Total: -1.00 -60.94 332.56 3.78 -57.17 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: 0.34 Total: 19.81 kcal Atomic # 6 Polarization: -52.13 SS G_CDS: 3.72 Total: -48.41 kcal Atomic # 7 Polarization: -73.07 SS G_CDS: -2.31 Total: -75.38 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.81 kcal Total: -60.94 3.78 -57.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449447284.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.948 kcal (2) G-P(sol) polarization free energy of solvation -60.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds