Wall clock time and date at job start Mon Mar 30 2020 06:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46994 * 2 1 4 4 C 1.50691 * 109.47559 * 239.99638 * 2 1 3 5 5 H 1.08006 * 120.00480 * 240.00444 * 4 2 1 6 6 C 1.37883 * 119.99872 * 59.99938 * 4 2 1 7 7 N 1.31509 * 119.99969 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99999 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.46972 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.46896 * 119.99763 * 8 6 4 11 11 H 1.48494 * 109.47011 * 240.00049 * 8 6 4 12 12 C 1.53006 * 109.46922 * 119.99626 * 2 1 3 13 13 N 1.46905 * 109.46982 * 300.00130 * 12 2 1 14 14 C 1.46904 * 110.99557 * 179.97438 * 13 12 2 15 15 H 1.08994 * 112.90950 * 23.75105 * 14 13 12 16 16 C 1.53954 * 113.61173 * 252.42353 * 14 13 12 17 17 C 1.53786 * 87.11118 * 270.84413 * 16 14 13 18 18 C 1.53778 * 113.61135 * 155.00190 * 14 13 12 19 19 H 1.09007 * 113.61726 * 203.74802 * 18 14 13 20 20 C 1.53002 * 113.61630 * 334.56565 * 18 14 13 21 21 C 1.53781 * 113.61609 * 178.47024 * 20 18 14 22 22 C 1.53781 * 87.08070 * 139.98229 * 21 20 18 23 23 C 1.53786 * 87.17350 * 334.52830 * 22 21 20 24 24 H 1.08997 * 109.47463 * 300.00090 * 1 2 3 25 25 H 1.08996 * 109.46962 * 60.00437 * 1 2 3 26 26 H 1.09003 * 109.47039 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46927 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.46909 * 299.99596 * 3 2 1 29 29 H 1.08997 * 109.47090 * 59.99681 * 3 2 1 30 30 H 0.96998 * 120.00304 * 180.02562 * 7 6 4 31 31 H 1.08997 * 109.47251 * 180.02562 * 12 2 1 32 32 H 1.09003 * 109.47044 * 60.00271 * 12 2 1 33 33 H 1.00894 * 110.99989 * 303.95306 * 13 12 2 34 34 H 1.09007 * 113.53646 * 156.29702 * 16 14 13 35 35 H 1.08999 * 113.74685 * 25.42649 * 16 14 13 36 36 H 1.08999 * 113.61433 * 220.08883 * 17 16 14 37 37 H 1.08999 * 113.68940 * 89.19777 * 17 16 14 38 38 H 1.09003 * 112.90345 * 47.22077 * 20 18 14 39 39 H 1.08999 * 113.61181 * 25.43284 * 21 20 18 40 40 H 1.08998 * 113.61680 * 254.52836 * 21 20 18 41 41 H 1.09002 * 113.61445 * 89.11830 * 22 21 20 42 42 H 1.09002 * 113.61408 * 219.93560 * 22 21 20 43 43 H 1.08992 * 113.61675 * 140.02412 * 23 22 21 44 44 H 1.09000 * 113.60973 * 270.92699 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 -1.2303 5 1 2.6533 -1.5886 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 0.9437 0.8301 -2.6034 8 14 2.3216 -1.1205 -4.0078 9 1 3.1456 -2.2878 -3.6035 10 1 1.1663 -1.5869 -4.8159 11 1 3.1468 -0.1875 -4.8163 12 6 2.0400 -0.7212 1.2493 13 7 1.5502 -0.0286 2.4487 14 6 2.0207 -0.6951 3.6704 15 1 2.9280 -1.2783 3.5130 16 6 0.9155 -1.4616 4.4195 17 6 0.6321 -0.1548 5.1792 18 6 2.0913 0.2364 4.8920 19 1 2.7919 -0.0989 5.6569 20 6 2.2701 1.7117 4.5283 21 6 2.3034 2.6473 5.7483 22 6 3.4210 3.4192 5.0273 23 6 3.7365 2.1128 4.2797 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9564 0.8899 30 1 0.7090 1.1612 -3.4844 31 1 3.1300 -0.7208 1.2496 32 1 1.6767 -1.7489 1.2494 33 1 1.8197 0.9437 2.4402 34 1 1.2948 -2.2623 5.0544 35 1 0.0930 -1.7820 3.7800 36 1 0.4199 -0.3026 6.2381 37 1 -0.0973 0.4885 4.6871 38 1 1.5884 2.0409 3.7440 39 1 2.6321 2.1578 6.6651 40 1 1.3887 3.2253 5.8805 41 1 3.0540 4.2153 4.3794 42 1 4.2220 3.7478 5.6894 43 1 3.9781 2.2595 3.2271 44 1 4.4564 1.4775 4.7957 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459729874.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:05 Heat of formation + Delta-G solvation = 27.768308 kcal Electronic energy + Delta-G solvation = -19631.085995 eV Core-core repulsion = 16970.101726 eV Total energy + Delta-G solvation = -2660.984269 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.96321 -37.33057 -36.01731 -32.55832 -30.17972 -27.46753 -25.69250 -25.50438 -25.18431 -24.53047 -23.13037 -22.64557 -19.42336 -18.62753 -18.26257 -16.12122 -15.63001 -15.58251 -14.84425 -14.73377 -14.31289 -13.47264 -13.15364 -12.82175 -12.56367 -12.40196 -12.28713 -11.94963 -11.71300 -11.51392 -11.30673 -11.14256 -10.98230 -10.76198 -10.59905 -10.48180 -10.38296 -10.31323 -10.13990 -10.02257 -9.77803 -9.46089 -9.34249 -8.95794 -8.58108 -8.26897 -7.60590 -5.88886 -3.98895 3.31781 3.40094 3.43837 4.43549 4.47726 4.66660 4.73217 4.82459 4.89561 5.03891 5.21572 5.36649 5.38228 5.45693 5.54184 5.73360 5.75504 5.84113 5.91163 5.94946 6.01814 6.06397 6.13403 6.26541 6.36177 6.38805 6.47097 6.56091 6.61114 6.71669 6.77120 6.93671 7.11442 7.20538 7.41858 7.52148 7.78376 7.81663 7.90092 8.07427 8.24971 8.38275 8.59423 9.02881 9.65995 11.11696 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.028776 B = 0.005449 C = 0.004999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.804490 B = 5137.588015 C = 5599.727486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.068 3.932 3 C -0.131 4.131 4 C -0.504 4.504 5 H 0.052 0.948 6 C 0.065 3.935 7 N -0.885 5.885 8 Si 0.887 3.113 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.286 1.286 12 C 0.077 3.923 13 N -0.668 5.668 14 C 0.069 3.931 15 H 0.047 0.953 16 C -0.136 4.136 17 C -0.121 4.121 18 C -0.106 4.106 19 H 0.084 0.916 20 C -0.103 4.103 21 C -0.132 4.132 22 C -0.143 4.143 23 C -0.139 4.139 24 H 0.019 0.981 25 H 0.073 0.927 26 H 0.017 0.983 27 H 0.018 0.982 28 H 0.083 0.917 29 H 0.008 0.992 30 H 0.257 0.743 31 H 0.011 0.989 32 H 0.054 0.946 33 H 0.341 0.659 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.054 0.946 37 H 0.084 0.916 38 H 0.099 0.901 39 H 0.076 0.924 40 H 0.063 0.937 41 H 0.079 0.921 42 H 0.061 0.939 43 H 0.067 0.933 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.359 2.049 15.203 15.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.068 3.932 3 C -0.188 4.188 4 C -0.543 4.543 5 H 0.070 0.930 6 C -0.136 4.136 7 N -0.524 5.524 8 Si 0.716 3.284 9 H -0.200 1.200 10 H -0.211 1.211 11 H -0.212 1.212 12 C -0.051 4.051 13 N -0.303 5.303 14 C -0.042 4.042 15 H 0.065 0.935 16 C -0.175 4.175 17 C -0.159 4.159 18 C -0.125 4.125 19 H 0.102 0.898 20 C -0.121 4.121 21 C -0.170 4.170 22 C -0.180 4.180 23 C -0.177 4.177 24 H 0.038 0.962 25 H 0.092 0.908 26 H 0.037 0.963 27 H 0.037 0.963 28 H 0.102 0.898 29 H 0.027 0.973 30 H 0.067 0.933 31 H 0.030 0.970 32 H 0.073 0.927 33 H 0.164 0.836 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.073 0.927 37 H 0.102 0.898 38 H 0.117 0.883 39 H 0.094 0.906 40 H 0.082 0.918 41 H 0.098 0.902 42 H 0.080 0.920 43 H 0.086 0.914 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.683 1.849 15.043 15.250 hybrid contribution 1.351 -0.315 -0.903 1.655 sum 3.034 1.535 14.141 14.543 Atomic orbital electron populations 1.21632 0.97440 0.98552 0.99993 1.18097 0.93168 0.91913 0.90051 1.21821 0.97651 0.99230 1.00136 1.21155 1.30890 1.11770 0.90490 0.92997 1.24886 0.95066 0.94983 0.98675 1.69842 1.36953 1.22877 1.22748 0.86613 0.78603 0.79731 0.83470 1.19971 1.21124 1.21191 1.22179 0.95311 0.97820 0.89838 1.60537 1.62982 1.06425 1.00356 1.22590 0.95643 0.95747 0.90208 0.93530 1.22962 0.99885 0.96018 0.98604 1.22736 0.96280 0.97906 0.98954 1.22779 0.97688 0.93984 0.98050 0.89806 1.22537 0.97111 0.94170 0.98333 1.22854 0.98751 0.98025 0.97357 1.22815 0.98721 0.97047 0.99450 1.22971 0.96825 0.97054 1.00840 0.96167 0.90805 0.96332 0.96275 0.89837 0.97267 0.93286 0.97027 0.92699 0.83594 0.91161 0.90790 0.92742 0.89763 0.88337 0.90571 0.91786 0.90240 0.91981 0.91411 0.90534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.92 8.09 37.16 0.30 -2.62 16 2 C 0.07 1.67 0.57 -155.66 -0.09 1.58 16 3 C -0.13 -3.10 7.92 37.16 0.29 -2.81 16 4 C -0.50 -13.71 8.01 -34.44 -0.28 -13.99 16 5 H 0.05 1.42 7.74 -52.48 -0.41 1.01 16 6 C 0.06 1.76 5.15 -17.82 -0.09 1.67 16 7 N -0.89 -24.68 9.35 55.43 0.52 -24.16 16 8 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 9 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 C 0.08 1.64 4.43 -3.82 -0.02 1.62 16 13 N -0.67 -12.04 5.58 -105.76 -0.59 -12.63 16 14 C 0.07 1.05 4.14 -66.81 -0.28 0.78 16 15 H 0.05 0.74 7.87 -51.93 -0.41 0.33 16 16 C -0.14 -1.88 7.89 -25.83 -0.20 -2.08 16 17 C -0.12 -1.52 7.56 -25.92 -0.20 -1.72 16 18 C -0.11 -1.33 3.34 -89.81 -0.30 -1.63 16 19 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 20 C -0.10 -1.27 2.50 -89.67 -0.22 -1.49 16 21 C -0.13 -1.39 7.64 -25.92 -0.20 -1.59 16 22 C -0.14 -1.50 8.07 -25.92 -0.21 -1.71 16 23 C -0.14 -1.67 7.66 -25.77 -0.20 -1.87 16 24 H 0.02 0.45 7.60 -51.93 -0.39 0.06 16 25 H 0.07 1.99 6.07 -51.93 -0.32 1.68 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.08 2.20 6.07 -51.93 -0.32 1.89 16 29 H 0.01 0.18 6.57 -51.93 -0.34 -0.16 16 30 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 31 H 0.01 0.25 8.13 -51.93 -0.42 -0.17 16 32 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.34 6.08 3.94 -39.29 -0.15 5.92 16 34 H 0.07 0.85 8.14 -51.92 -0.42 0.43 16 35 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 36 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.08 1.15 8.10 -51.93 -0.42 0.73 16 38 H 0.10 1.39 6.51 -51.93 -0.34 1.05 16 39 H 0.08 0.74 8.10 -51.93 -0.42 0.32 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 44 H 0.08 0.87 8.10 -51.93 -0.42 0.45 16 LS Contribution 331.45 15.07 4.99 4.99 Total: -1.00 -26.86 331.45 -9.92 -36.78 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -8.14 Total: 4.62 kcal Atomic # 6 Polarization: -24.18 SS G_CDS: -1.68 Total: -25.86 kcal Atomic # 7 Polarization: -36.72 SS G_CDS: -0.07 Total: -36.79 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -26.86 -9.92 -36.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459729874.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.552 kcal (2) G-P(sol) polarization free energy of solvation -26.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds