Wall clock time and date at job start Mon Mar 30 2020 06:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46994 * 2 1 4 4 C 1.50691 * 109.47559 * 239.99638 * 2 1 3 5 5 H 1.08006 * 120.00480 * 240.00444 * 4 2 1 6 6 C 1.37883 * 119.99872 * 59.99938 * 4 2 1 7 7 N 1.31509 * 119.99969 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99999 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.46972 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.46896 * 119.99763 * 8 6 4 11 11 H 1.48494 * 109.47011 * 240.00049 * 8 6 4 12 12 C 1.53006 * 109.46922 * 119.99626 * 2 1 3 13 13 N 1.46905 * 109.46982 * 300.00130 * 12 2 1 14 14 C 1.46904 * 110.99557 * 179.97438 * 13 12 2 15 15 H 1.08994 * 112.90950 * 23.75105 * 14 13 12 16 16 C 1.53954 * 113.61173 * 252.42353 * 14 13 12 17 17 C 1.53786 * 87.11118 * 270.84413 * 16 14 13 18 18 C 1.53778 * 113.61135 * 155.00190 * 14 13 12 19 19 H 1.09007 * 113.61726 * 203.74802 * 18 14 13 20 20 C 1.53002 * 113.61630 * 334.56565 * 18 14 13 21 21 C 1.53781 * 113.61609 * 178.47024 * 20 18 14 22 22 C 1.53781 * 87.08070 * 139.98229 * 21 20 18 23 23 C 1.53786 * 87.17350 * 334.52830 * 22 21 20 24 24 H 1.08997 * 109.47463 * 300.00090 * 1 2 3 25 25 H 1.08996 * 109.46962 * 60.00437 * 1 2 3 26 26 H 1.09003 * 109.47039 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46927 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.46909 * 299.99596 * 3 2 1 29 29 H 1.08997 * 109.47090 * 59.99681 * 3 2 1 30 30 H 0.96998 * 120.00304 * 180.02562 * 7 6 4 31 31 H 1.08997 * 109.47251 * 180.02562 * 12 2 1 32 32 H 1.09003 * 109.47044 * 60.00271 * 12 2 1 33 33 H 1.00894 * 110.99989 * 303.95306 * 13 12 2 34 34 H 1.09007 * 113.53646 * 156.29702 * 16 14 13 35 35 H 1.08999 * 113.74685 * 25.42649 * 16 14 13 36 36 H 1.08999 * 113.61433 * 220.08883 * 17 16 14 37 37 H 1.08999 * 113.68940 * 89.19777 * 17 16 14 38 38 H 1.09003 * 112.90345 * 47.22077 * 20 18 14 39 39 H 1.08999 * 113.61181 * 25.43284 * 21 20 18 40 40 H 1.08998 * 113.61680 * 254.52836 * 21 20 18 41 41 H 1.09002 * 113.61445 * 89.11830 * 22 21 20 42 42 H 1.09002 * 113.61408 * 219.93560 * 22 21 20 43 43 H 1.08992 * 113.61675 * 140.02412 * 23 22 21 44 44 H 1.09000 * 113.60973 * 270.92699 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 -1.2303 5 1 2.6533 -1.5886 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 0.9437 0.8301 -2.6034 8 14 2.3216 -1.1205 -4.0078 9 1 3.1456 -2.2878 -3.6035 10 1 1.1663 -1.5869 -4.8159 11 1 3.1468 -0.1875 -4.8163 12 6 2.0400 -0.7212 1.2493 13 7 1.5502 -0.0286 2.4487 14 6 2.0207 -0.6951 3.6704 15 1 2.9280 -1.2783 3.5130 16 6 0.9155 -1.4616 4.4195 17 6 0.6321 -0.1548 5.1792 18 6 2.0913 0.2364 4.8920 19 1 2.7919 -0.0989 5.6569 20 6 2.2701 1.7117 4.5283 21 6 2.3034 2.6473 5.7483 22 6 3.4210 3.4192 5.0273 23 6 3.7365 2.1128 4.2797 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9564 0.8899 30 1 0.7090 1.1612 -3.4844 31 1 3.1300 -0.7208 1.2496 32 1 1.6767 -1.7489 1.2494 33 1 1.8197 0.9437 2.4402 34 1 1.2948 -2.2623 5.0544 35 1 0.0930 -1.7820 3.7800 36 1 0.4199 -0.3026 6.2381 37 1 -0.0973 0.4885 4.6871 38 1 1.5884 2.0409 3.7440 39 1 2.6321 2.1578 6.6651 40 1 1.3887 3.2253 5.8805 41 1 3.0540 4.2153 4.3794 42 1 4.2220 3.7478 5.6894 43 1 3.9781 2.2595 3.2271 44 1 4.4564 1.4775 4.7957 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459729874.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:03 Heat of formation + Delta-G solvation = 15.390362 kcal Electronic energy + Delta-G solvation = -19631.622743 eV Core-core repulsion = 16970.101726 eV Total energy + Delta-G solvation = -2661.521017 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -41.03626 -38.56297 -37.63335 -34.36786 -31.98998 -28.46240 -27.51100 -27.26332 -26.66343 -25.93264 -24.51980 -23.63718 -20.56108 -20.15886 -19.60496 -17.87285 -17.19380 -16.72609 -16.45030 -15.90252 -15.68179 -15.12377 -14.55338 -14.40066 -14.01489 -13.83978 -13.44980 -13.24998 -13.16506 -12.97819 -12.70606 -12.57641 -12.53104 -12.43416 -12.31543 -12.11118 -12.07710 -11.56992 -11.50078 -11.32740 -11.24224 -11.00501 -10.61368 -10.60888 -10.43490 -10.35553 -9.09353 -7.97533 -6.14394 1.40318 1.43421 1.53076 2.45831 3.24432 3.36576 3.49911 3.75647 3.84791 4.01179 4.03275 4.12905 4.35399 4.40053 4.52884 4.58408 4.63702 4.77495 4.82601 4.85646 4.91337 4.93122 5.03150 5.06341 5.09228 5.12104 5.15020 5.20260 5.25098 5.26964 5.37379 5.42060 5.50243 5.53118 5.60560 5.69207 5.73237 5.76037 6.18505 6.29505 6.37845 6.51249 6.70509 6.95081 7.53161 9.00979 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.028776 B = 0.005449 C = 0.004999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.804490 B = 5137.588015 C = 5599.727486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.060 3.940 3 C -0.117 4.117 4 C -0.525 4.525 5 H 0.043 0.957 6 C 0.022 3.978 7 N -0.904 5.904 8 Si 0.945 3.055 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.282 1.282 12 C 0.093 3.907 13 N -0.668 5.668 14 C 0.052 3.948 15 H 0.040 0.960 16 C -0.134 4.134 17 C -0.114 4.114 18 C -0.091 4.091 19 H 0.104 0.896 20 C -0.109 4.109 21 C -0.121 4.121 22 C -0.139 4.139 23 C -0.143 4.143 24 H 0.033 0.967 25 H 0.049 0.951 26 H 0.009 0.991 27 H 0.015 0.985 28 H 0.057 0.943 29 H 0.029 0.971 30 H 0.258 0.742 31 H 0.004 0.996 32 H 0.043 0.957 33 H 0.342 0.658 34 H 0.091 0.909 35 H 0.053 0.947 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.091 0.909 40 H 0.067 0.933 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.047 0.953 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.865 2.034 17.057 17.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.059 3.941 3 C -0.175 4.175 4 C -0.564 4.564 5 H 0.061 0.939 6 C -0.177 4.177 7 N -0.543 5.543 8 Si 0.772 3.228 9 H -0.198 1.198 10 H -0.208 1.208 11 H -0.208 1.208 12 C -0.036 4.036 13 N -0.303 5.303 14 C -0.058 4.058 15 H 0.058 0.942 16 C -0.172 4.172 17 C -0.151 4.151 18 C -0.110 4.110 19 H 0.122 0.878 20 C -0.128 4.128 21 C -0.159 4.159 22 C -0.176 4.176 23 C -0.181 4.181 24 H 0.052 0.948 25 H 0.068 0.932 26 H 0.028 0.972 27 H 0.034 0.966 28 H 0.076 0.924 29 H 0.048 0.952 30 H 0.067 0.933 31 H 0.022 0.978 32 H 0.062 0.938 33 H 0.165 0.835 34 H 0.110 0.890 35 H 0.072 0.928 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.096 0.904 39 H 0.110 0.890 40 H 0.086 0.914 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.066 0.934 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.187 1.835 16.908 17.148 hybrid contribution 1.189 -0.321 -1.468 1.916 sum 3.376 1.515 15.440 15.877 Atomic orbital electron populations 1.21456 0.97716 0.97697 0.99320 1.18144 0.92898 0.92326 0.90713 1.21629 0.97259 0.98809 0.99796 1.21447 1.31124 1.11864 0.91988 0.93908 1.25538 0.95299 0.95665 1.01162 1.69967 1.37425 1.23650 1.23251 0.85709 0.78089 0.78746 0.80268 1.19751 1.20837 1.20758 1.21819 0.94558 0.97052 0.90165 1.60466 1.63009 1.06405 1.00373 1.22763 0.96011 0.97007 0.90042 0.94209 1.22992 0.98568 0.97179 0.98500 1.22665 0.95874 0.96559 1.00012 1.22740 0.98154 0.93447 0.96634 0.87810 1.22501 0.96848 0.94453 0.98972 1.22819 0.98890 0.97239 0.96916 1.22800 0.99216 0.96266 0.99358 1.23004 0.96766 0.98331 0.99971 0.94840 0.93240 0.97175 0.96593 0.92439 0.95197 0.93283 0.97812 0.93809 0.83525 0.89023 0.92846 0.90358 0.91196 0.90448 0.89036 0.91385 0.90641 0.90495 0.93444 0.89640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -5.20 8.09 71.98 0.58 -4.62 16 2 C 0.06 2.95 0.57 -52.93 -0.03 2.92 16 3 C -0.12 -5.62 7.92 71.98 0.57 -5.05 16 4 C -0.53 -28.99 8.01 25.60 0.21 -28.78 16 5 H 0.04 2.38 7.74 -2.91 -0.02 2.35 16 6 C 0.02 1.23 5.15 84.66 0.44 1.66 16 7 N -0.90 -51.04 9.35 21.45 0.20 -50.84 16 8 Si 0.95 43.92 29.54 68.60 2.03 45.95 16 9 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 10 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 11 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 12 C 0.09 4.02 4.43 86.30 0.38 4.40 16 13 N -0.67 -23.89 5.58 -488.53 -2.73 -26.62 16 14 C 0.05 1.53 4.14 45.50 0.19 1.72 16 15 H 0.04 1.23 7.87 -2.39 -0.02 1.21 16 16 C -0.13 -3.47 7.89 31.18 0.25 -3.23 16 17 C -0.11 -2.58 7.56 31.12 0.24 -2.34 16 18 C -0.09 -2.06 3.34 -10.27 -0.03 -2.10 16 19 H 0.10 2.00 8.14 -2.38 -0.02 1.98 16 20 C -0.11 -2.49 2.50 -10.18 -0.03 -2.52 16 21 C -0.12 -2.19 7.64 31.12 0.24 -1.96 16 22 C -0.14 -2.62 8.07 31.12 0.25 -2.37 16 23 C -0.14 -3.21 7.66 31.21 0.24 -2.97 16 24 H 0.03 1.53 7.60 -2.39 -0.02 1.51 16 25 H 0.05 2.71 6.07 -2.39 -0.01 2.69 16 26 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 27 H 0.01 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.06 3.07 6.07 -2.39 -0.01 3.06 16 29 H 0.03 1.26 6.57 -2.39 -0.02 1.25 16 30 H 0.26 13.94 8.31 -92.71 -0.77 13.17 16 31 H 0.00 0.16 8.13 -2.39 -0.02 0.14 16 32 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.34 12.08 3.94 -89.70 -0.35 11.73 16 34 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 35 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.07 1.80 8.10 -2.39 -0.02 1.78 16 38 H 0.08 2.12 6.51 -2.39 -0.02 2.10 16 39 H 0.09 1.41 8.10 -2.39 -0.02 1.39 16 40 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.09 1.75 8.10 -2.39 -0.02 1.73 16 Total: -1.00 -57.24 331.45 3.57 -53.67 By element: Atomic # 1 Polarization: 22.48 SS G_CDS: 0.59 Total: 23.07 kcal Atomic # 6 Polarization: -48.71 SS G_CDS: 3.48 Total: -45.22 kcal Atomic # 7 Polarization: -74.93 SS G_CDS: -2.53 Total: -77.45 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -57.24 3.57 -53.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459729874.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.056 kcal (2) G-P(sol) polarization free energy of solvation -57.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds