Wall clock time and date at job start Mon Mar 30 2020 06:14:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47189 * 2 1 4 4 C 1.50704 * 109.47174 * 240.00020 * 2 1 3 5 5 H 1.07998 * 120.00137 * 239.99716 * 4 2 1 6 6 C 1.37879 * 119.99691 * 59.99792 * 4 2 1 7 7 N 1.31514 * 120.00165 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99838 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47503 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47251 * 120.00287 * 8 6 4 11 11 H 1.48509 * 109.47314 * 240.00083 * 8 6 4 12 12 C 1.53005 * 109.47489 * 120.00332 * 2 1 3 13 13 N 1.46903 * 109.46537 * 299.99910 * 12 2 1 14 14 C 1.46899 * 110.99579 * 179.97438 * 13 12 2 15 15 H 1.08997 * 112.84969 * 26.69726 * 14 13 12 16 16 C 1.53782 * 113.61749 * 255.49473 * 14 13 12 17 17 C 1.53781 * 87.08260 * 219.93691 * 16 14 13 18 18 C 1.53786 * 87.17350 * 25.39213 * 17 16 14 19 19 H 1.08993 * 113.61491 * 89.15923 * 18 17 16 20 20 C 1.52999 * 113.61361 * 220.06273 * 18 17 16 21 21 C 1.53781 * 113.61692 * 257.99218 * 20 18 17 22 22 C 1.53779 * 87.08348 * 220.01837 * 21 20 18 23 23 C 1.53779 * 113.61587 * 160.49399 * 20 18 17 24 24 H 1.08997 * 109.47002 * 299.99318 * 1 2 3 25 25 H 1.08999 * 109.47048 * 60.00246 * 1 2 3 26 26 H 1.09002 * 109.46801 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47149 * 180.02562 * 3 2 1 28 28 H 1.08997 * 109.46958 * 300.00375 * 3 2 1 29 29 H 1.08999 * 109.47253 * 60.00096 * 3 2 1 30 30 H 0.96999 * 119.99877 * 179.97438 * 7 6 4 31 31 H 1.08990 * 109.47134 * 180.02562 * 12 2 1 32 32 H 1.08999 * 109.47158 * 59.99738 * 12 2 1 33 33 H 1.00894 * 110.99978 * 303.95359 * 13 12 2 34 34 H 1.09001 * 113.61250 * 105.38508 * 16 14 13 35 35 H 1.08997 * 113.61225 * 334.48349 * 16 14 13 36 36 H 1.09002 * 113.61445 * 139.98212 * 17 16 14 37 37 H 1.09002 * 113.61408 * 270.79943 * 17 16 14 38 38 H 1.09007 * 112.85233 * 29.29289 * 20 18 17 39 39 H 1.09007 * 113.60675 * 334.56554 * 21 20 18 40 40 H 1.08996 * 113.61826 * 105.46234 * 21 20 18 41 41 H 1.08997 * 113.61520 * 270.88297 * 22 21 20 42 42 H 1.08998 * 113.61202 * 139.97616 * 22 21 20 43 43 H 1.09004 * 113.61245 * 254.52956 * 23 20 18 44 44 H 1.08997 * 113.61239 * 25.34287 * 23 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3224 -1.1194 -4.0080 9 1 3.1474 -2.2863 -3.6039 10 1 1.1678 -1.5865 -4.8166 11 1 3.1472 -0.1856 -4.8161 12 6 2.0401 -0.7213 1.2492 13 7 1.5504 -0.0288 2.4486 14 6 2.0210 -0.6953 3.6702 15 1 2.9559 -1.2363 3.5239 16 6 0.9349 -1.5223 4.3783 17 6 1.5091 -0.9958 5.7041 18 6 2.0259 0.2162 4.9110 19 1 1.3110 1.0369 4.8527 20 6 3.4241 0.6731 5.3319 21 6 3.4197 1.9189 6.2335 22 6 4.6460 2.4005 5.4404 23 6 4.1339 1.5366 4.2759 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 0.7094 1.1618 -3.4844 31 1 3.1300 -0.7209 1.2494 32 1 1.6768 -1.7490 1.2492 33 1 1.8198 0.9435 2.4401 34 1 1.0515 -2.5983 4.2486 35 1 -0.0788 -1.1778 4.1740 36 1 0.7462 -0.7427 6.4404 37 1 2.3030 -1.6198 6.1145 38 1 4.0386 -0.1420 5.7143 39 1 2.5401 2.5492 6.1029 40 1 3.6342 1.7014 7.2798 41 1 5.5950 2.0586 5.8534 42 1 4.6363 3.4696 5.2282 43 1 4.9252 1.0104 3.7417 44 1 3.4496 2.0612 3.6091 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459729878.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:10 Heat of formation + Delta-G solvation = 22.093190 kcal Electronic energy + Delta-G solvation = -19417.421920 eV Core-core repulsion = 16756.191559 eV Total energy + Delta-G solvation = -2661.230361 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.87476 -37.38275 -36.05667 -32.67764 -30.28194 -27.43441 -25.71283 -25.50182 -25.19660 -24.62309 -23.04447 -22.20099 -19.56156 -19.07472 -18.29650 -16.11174 -15.74747 -15.46180 -15.03013 -14.44053 -14.16729 -13.58410 -13.09364 -12.95969 -12.65872 -12.42180 -12.20630 -11.95590 -11.77852 -11.62043 -11.29955 -11.11999 -11.01336 -10.70074 -10.65110 -10.51951 -10.47974 -10.39973 -10.14063 -10.02675 -9.86449 -9.53188 -9.33325 -8.93365 -8.56583 -8.26092 -7.60682 -5.88050 -3.98080 3.32079 3.40403 3.44103 4.40873 4.47336 4.62090 4.67690 4.83035 4.94832 4.96727 5.17785 5.29535 5.35356 5.37426 5.50470 5.66491 5.76482 5.78522 5.82972 5.87789 5.94144 6.04121 6.08716 6.21391 6.26120 6.37981 6.44505 6.48372 6.62905 6.69779 6.77830 6.95238 7.12789 7.21927 7.43240 7.53547 7.79600 7.82700 7.91820 8.07745 8.26251 8.39363 8.60426 9.03760 9.66774 11.12440 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.029137 B = 0.005097 C = 0.004724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.746543 B = 5492.375327 C = 5926.370005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.068 3.932 3 C -0.131 4.131 4 C -0.504 4.504 5 H 0.051 0.949 6 C 0.065 3.935 7 N -0.885 5.885 8 Si 0.887 3.113 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.286 1.286 12 C 0.076 3.924 13 N -0.673 5.673 14 C 0.069 3.931 15 H 0.061 0.939 16 C -0.128 4.128 17 C -0.136 4.136 18 C -0.101 4.101 19 H 0.094 0.906 20 C -0.101 4.101 21 C -0.135 4.135 22 C -0.144 4.144 23 C -0.136 4.136 24 H 0.019 0.981 25 H 0.073 0.927 26 H 0.017 0.983 27 H 0.018 0.982 28 H 0.082 0.918 29 H 0.010 0.990 30 H 0.257 0.743 31 H 0.011 0.989 32 H 0.054 0.946 33 H 0.336 0.664 34 H 0.058 0.942 35 H 0.086 0.914 36 H 0.063 0.937 37 H 0.074 0.926 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.061 0.939 41 H 0.075 0.925 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.616 0.886 15.926 16.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.067 3.933 3 C -0.189 4.189 4 C -0.543 4.543 5 H 0.070 0.930 6 C -0.136 4.136 7 N -0.524 5.524 8 Si 0.715 3.285 9 H -0.200 1.200 10 H -0.211 1.211 11 H -0.212 1.212 12 C -0.052 4.052 13 N -0.305 5.305 14 C -0.042 4.042 15 H 0.079 0.921 16 C -0.166 4.166 17 C -0.174 4.174 18 C -0.120 4.120 19 H 0.112 0.888 20 C -0.119 4.119 21 C -0.172 4.172 22 C -0.181 4.181 23 C -0.173 4.173 24 H 0.039 0.961 25 H 0.092 0.908 26 H 0.036 0.964 27 H 0.037 0.963 28 H 0.101 0.899 29 H 0.029 0.971 30 H 0.067 0.933 31 H 0.029 0.971 32 H 0.072 0.928 33 H 0.156 0.844 34 H 0.076 0.924 35 H 0.105 0.895 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.103 0.897 39 H 0.098 0.902 40 H 0.080 0.920 41 H 0.094 0.906 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.937 0.678 15.762 16.048 hybrid contribution 1.354 -0.301 -0.941 1.676 sum 4.292 0.377 14.821 15.435 Atomic orbital electron populations 1.21626 0.97458 0.98507 0.99980 1.18100 0.93156 0.91927 0.90097 1.21818 0.97640 0.99231 1.00177 1.21162 1.30856 1.11755 0.90528 0.93038 1.24885 0.95074 0.94988 0.98663 1.69847 1.36978 1.22861 1.22722 0.86622 0.78605 0.79726 0.83500 1.19984 1.21130 1.21196 1.22156 0.95237 0.97779 0.90054 1.60760 1.62741 1.06057 1.00976 1.23009 0.96055 0.95819 0.89325 0.92092 1.22983 0.99906 0.99038 0.94705 1.22806 1.00266 0.97623 0.96731 1.22855 0.95786 0.97018 0.96362 0.88814 1.22544 0.96100 0.96324 0.96938 1.22934 0.98464 0.97605 0.98206 1.22814 0.97843 0.99791 0.97687 1.22893 1.00017 0.98074 0.96361 0.96150 0.90842 0.96381 0.96287 0.89897 0.97143 0.93305 0.97102 0.92776 0.84384 0.92368 0.89509 0.91814 0.90776 0.89685 0.90168 0.92022 0.90620 0.91684 0.91803 0.89901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.92 8.09 37.16 0.30 -2.62 16 2 C 0.07 1.66 0.57 -155.66 -0.09 1.57 16 3 C -0.13 -3.12 7.92 37.16 0.29 -2.82 16 4 C -0.50 -13.74 8.01 -34.44 -0.28 -14.02 16 5 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 6 C 0.06 1.77 5.15 -17.82 -0.09 1.67 16 7 N -0.88 -24.73 9.35 55.43 0.52 -24.21 16 8 Si 0.89 21.32 29.54 -169.99 -5.02 16.29 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 C 0.08 1.62 4.45 -3.82 -0.02 1.61 16 13 N -0.67 -12.09 5.76 -105.77 -0.61 -12.70 16 14 C 0.07 1.02 3.41 -66.80 -0.23 0.80 16 15 H 0.06 0.96 7.85 -51.93 -0.41 0.55 16 16 C -0.13 -1.75 7.88 -25.92 -0.20 -1.96 16 17 C -0.14 -1.55 7.64 -25.92 -0.20 -1.75 16 18 C -0.10 -1.25 3.12 -89.71 -0.28 -1.53 16 19 H 0.09 1.21 7.97 -51.93 -0.41 0.80 16 20 C -0.10 -1.12 3.51 -89.81 -0.31 -1.44 16 21 C -0.13 -1.33 7.64 -25.92 -0.20 -1.53 16 22 C -0.14 -1.45 8.08 -25.92 -0.21 -1.66 16 23 C -0.14 -1.62 7.38 -25.92 -0.19 -1.81 16 24 H 0.02 0.46 7.60 -51.93 -0.39 0.06 16 25 H 0.07 1.99 6.07 -51.93 -0.32 1.67 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.08 2.19 6.07 -51.93 -0.32 1.88 16 29 H 0.01 0.21 6.57 -51.93 -0.34 -0.13 16 30 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 31 H 0.01 0.23 8.13 -51.93 -0.42 -0.19 16 32 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 33 H 0.34 6.00 6.23 -39.29 -0.24 5.75 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.78 7.97 -51.93 -0.41 0.37 16 38 H 0.08 0.92 7.97 -51.92 -0.41 0.51 16 39 H 0.08 0.80 7.97 -51.92 -0.41 0.38 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 44 H 0.08 1.08 7.71 -51.93 -0.40 0.68 16 LS Contribution 334.41 15.07 5.04 5.04 Total: -1.00 -26.94 334.41 -10.04 -36.98 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -8.27 Total: 4.08 kcal Atomic # 6 Polarization: -23.78 SS G_CDS: -1.70 Total: -25.49 kcal Atomic # 7 Polarization: -36.82 SS G_CDS: -0.09 Total: -36.91 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -26.94 -10.04 -36.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459729878.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.077 kcal (2) G-P(sol) polarization free energy of solvation -26.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds