Wall clock time and date at job start Mon Mar 30 2020 06:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47454 * 2 1 4 4 C 1.50705 * 109.46892 * 239.99560 * 2 1 3 5 5 H 1.07996 * 120.00031 * 240.00251 * 4 2 1 6 6 C 1.37876 * 119.99789 * 60.00561 * 4 2 1 7 7 N 1.31509 * 120.00031 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 119.99810 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47432 * 60.00137 * 8 6 4 10 10 H 1.48503 * 109.47002 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.47012 * 299.99426 * 8 6 4 12 12 C 1.52998 * 109.46813 * 120.00112 * 2 1 3 13 13 N 1.46906 * 109.47160 * 299.99708 * 12 2 1 14 14 C 1.46905 * 110.99924 * 180.02562 * 13 12 2 15 15 H 1.08993 * 112.84704 * 336.19241 * 14 13 12 16 16 C 1.53777 * 113.61341 * 107.50250 * 14 13 12 17 17 C 1.53775 * 87.07992 * 89.11212 * 16 14 13 18 18 C 1.53779 * 87.08438 * 25.43258 * 17 16 14 19 19 H 1.09002 * 113.61731 * 89.11293 * 18 17 16 20 20 C 1.53000 * 113.69071 * 220.00724 * 18 17 16 21 21 C 1.53781 * 113.61533 * 256.55976 * 20 18 17 22 22 C 1.53784 * 87.08051 * 220.02009 * 21 20 18 23 23 C 1.53776 * 87.08125 * 25.43168 * 22 21 20 24 24 H 1.09002 * 109.46687 * 300.00357 * 1 2 3 25 25 H 1.09000 * 109.46701 * 59.99745 * 1 2 3 26 26 H 1.08998 * 109.47858 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46693 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.46897 * 299.99966 * 3 2 1 29 29 H 1.08998 * 109.47122 * 59.99749 * 3 2 1 30 30 H 0.97002 * 119.99994 * 179.97438 * 7 6 4 31 31 H 1.08998 * 109.47221 * 179.97438 * 12 2 1 32 32 H 1.09000 * 109.47246 * 59.99729 * 12 2 1 33 33 H 1.00895 * 110.99956 * 56.04299 * 13 12 2 34 34 H 1.09008 * 113.61204 * 203.66327 * 16 14 13 35 35 H 1.08998 * 113.61354 * 334.47994 * 16 14 13 36 36 H 1.08993 * 113.61636 * 270.87622 * 17 16 14 37 37 H 1.09008 * 113.61006 * 139.97865 * 17 16 14 38 38 H 1.09008 * 112.84673 * 27.86325 * 20 18 17 39 39 H 1.08995 * 113.61341 * 334.56757 * 21 20 18 40 40 H 1.09007 * 113.61227 * 105.46818 * 21 20 18 41 41 H 1.09006 * 113.60716 * 270.88155 * 22 21 20 42 42 H 1.08996 * 113.61322 * 139.98419 * 22 21 20 43 43 H 1.09004 * 113.61598 * 220.02393 * 23 22 21 44 44 H 1.08992 * 113.69383 * 89.12728 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9429 0.8295 -2.6034 8 14 2.3213 -1.1206 -4.0079 9 1 1.8256 -2.5204 -4.0077 10 1 1.8269 -0.4201 -5.2204 11 1 3.8063 -1.1212 -4.0081 12 6 2.0399 -0.7213 1.2492 13 7 1.5503 -0.0287 2.4487 14 6 2.0218 -0.6946 3.6704 15 1 2.2679 -1.7445 3.5120 16 6 3.1129 0.0901 4.4176 17 6 1.9761 0.7947 5.1765 18 6 1.1200 -0.4506 4.8919 19 1 1.2036 -1.2222 5.6574 20 6 -0.3310 -0.1293 4.5283 21 6 -1.3242 -0.3843 5.6743 22 6 -2.2851 -0.9436 4.6119 23 6 -1.0404 -1.2613 3.7666 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3635 -1.0276 0.0005 27 1 3.1301 1.4423 -0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.6768 1.9563 0.8899 30 1 0.7089 1.1612 -3.4844 31 1 3.1299 -0.7217 1.2491 32 1 1.6766 -1.7489 1.2492 33 1 0.5438 0.0415 2.4401 34 1 3.7414 -0.5337 5.0534 35 1 3.6893 0.7559 3.7754 36 1 1.6139 1.6959 4.6819 37 1 2.1867 0.9473 6.2351 38 1 -0.4434 0.8490 4.0608 39 1 -0.9822 -1.1315 6.3903 40 1 -1.6837 0.5275 6.1516 41 1 -2.9331 -0.1877 4.1681 42 1 -2.8290 -1.8299 4.9385 43 1 -1.1707 -1.0575 2.7038 44 1 -0.6198 -2.2480 3.9600 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459729881.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:13 Heat of formation + Delta-G solvation = 26.243066 kcal Electronic energy + Delta-G solvation = -19740.882412 eV Core-core repulsion = 17079.832003 eV Total energy + Delta-G solvation = -2661.050408 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.02293 -37.26187 -36.04050 -32.56360 -30.17855 -27.44871 -25.77597 -25.41848 -25.15662 -24.54224 -23.13632 -22.63233 -19.34298 -18.61412 -18.30246 -16.10025 -15.65971 -15.56503 -14.83977 -14.70580 -14.30105 -13.50719 -13.15187 -12.79233 -12.55009 -12.38763 -12.25289 -11.88510 -11.66895 -11.60949 -11.27811 -11.13101 -10.95321 -10.74992 -10.64508 -10.46479 -10.44128 -10.27940 -10.14798 -10.01464 -9.75041 -9.46285 -9.33700 -8.95322 -8.59150 -8.25816 -7.58695 -5.88224 -3.98428 3.34542 3.39190 3.41971 4.44426 4.47878 4.63011 4.74137 4.86736 4.91970 5.05725 5.23055 5.36234 5.37238 5.47507 5.55803 5.74638 5.78170 5.84935 5.91286 5.95763 6.02520 6.07741 6.16370 6.28128 6.36521 6.39951 6.48494 6.56341 6.61127 6.71535 6.77030 6.93889 7.11999 7.20867 7.42243 7.52551 7.78645 7.81967 7.91148 8.10013 8.25674 8.38884 8.59787 9.02899 9.66325 11.12270 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.028430 B = 0.005644 C = 0.005134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.653249 B = 4959.651898 C = 5452.391341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.069 3.931 3 C -0.119 4.119 4 C -0.506 4.506 5 H 0.051 0.949 6 C 0.065 3.935 7 N -0.885 5.885 8 Si 0.888 3.112 9 H -0.279 1.279 10 H -0.288 1.288 11 H -0.278 1.278 12 C 0.077 3.923 13 N -0.669 5.669 14 C 0.070 3.930 15 H 0.046 0.954 16 C -0.137 4.137 17 C -0.122 4.122 18 C -0.107 4.107 19 H 0.084 0.916 20 C -0.100 4.100 21 C -0.134 4.134 22 C -0.142 4.142 23 C -0.141 4.141 24 H 0.009 0.991 25 H 0.083 0.917 26 H 0.018 0.982 27 H 0.018 0.982 28 H 0.073 0.927 29 H 0.019 0.981 30 H 0.258 0.742 31 H 0.054 0.946 32 H 0.011 0.989 33 H 0.343 0.657 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.054 0.946 38 H 0.095 0.905 39 H 0.076 0.924 40 H 0.062 0.938 41 H 0.079 0.921 42 H 0.062 0.938 43 H 0.071 0.929 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.732 -1.728 14.894 15.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.069 3.931 3 C -0.176 4.176 4 C -0.545 4.545 5 H 0.069 0.931 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.716 3.284 9 H -0.205 1.205 10 H -0.214 1.214 11 H -0.204 1.204 12 C -0.052 4.052 13 N -0.303 5.303 14 C -0.041 4.041 15 H 0.064 0.936 16 C -0.175 4.175 17 C -0.160 4.160 18 C -0.126 4.126 19 H 0.103 0.897 20 C -0.119 4.119 21 C -0.172 4.172 22 C -0.180 4.180 23 C -0.179 4.179 24 H 0.027 0.973 25 H 0.102 0.898 26 H 0.037 0.963 27 H 0.037 0.963 28 H 0.092 0.908 29 H 0.038 0.962 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.029 0.971 33 H 0.166 0.834 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.102 0.898 37 H 0.073 0.927 38 H 0.113 0.887 39 H 0.094 0.906 40 H 0.081 0.919 41 H 0.098 0.902 42 H 0.081 0.919 43 H 0.090 0.910 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.324 -1.149 14.729 14.955 hybrid contribution -0.131 -1.400 -0.894 1.666 sum -2.455 -2.548 13.834 14.280 Atomic orbital electron populations 1.21829 0.98617 0.98260 1.00128 1.18082 0.92008 0.93039 0.90017 1.21635 0.97784 0.98233 0.99988 1.21079 1.31100 1.11767 0.90520 0.93115 1.24876 0.95075 0.94952 0.98639 1.69822 1.36851 1.22785 1.22961 0.86731 0.79190 0.79751 0.82690 1.20505 1.21377 1.20419 1.22174 0.98867 0.94244 0.89871 1.60484 1.16749 1.52828 1.00269 1.22564 0.95860 0.95438 0.90203 0.93599 1.22930 0.96381 0.99575 0.98628 1.22792 0.96827 0.97386 0.98974 1.22824 0.93187 0.98536 0.98087 0.89735 1.22469 0.93059 0.99337 0.96992 1.22929 0.97173 1.00686 0.96396 1.22808 0.96537 1.00847 0.97769 1.22958 0.96420 0.98839 0.99651 0.97256 0.89844 0.96267 0.96326 0.90804 0.96171 0.93172 0.92733 0.97064 0.83433 0.91159 0.90775 0.89751 0.92729 0.88687 0.90564 0.91888 0.90241 0.91924 0.91026 0.90483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.10 7.92 37.16 0.29 -2.81 16 2 C 0.07 1.69 0.57 -155.66 -0.09 1.60 16 3 C -0.12 -2.93 8.09 37.16 0.30 -2.63 16 4 C -0.51 -13.76 8.01 -34.44 -0.28 -14.03 16 5 H 0.05 1.38 7.74 -52.49 -0.41 0.97 16 6 C 0.07 1.79 5.15 -17.82 -0.09 1.69 16 7 N -0.89 -24.67 9.35 55.43 0.52 -24.15 16 8 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 9 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 12 C 0.08 1.64 4.43 -3.82 -0.02 1.62 16 13 N -0.67 -12.07 5.61 -105.86 -0.59 -12.66 16 14 C 0.07 1.07 3.85 -66.90 -0.26 0.82 16 15 H 0.05 0.73 7.87 -51.93 -0.41 0.32 16 16 C -0.14 -1.89 7.88 -25.92 -0.20 -2.10 16 17 C -0.12 -1.54 7.56 -25.92 -0.20 -1.74 16 18 C -0.11 -1.35 3.49 -89.81 -0.31 -1.67 16 19 H 0.08 0.98 7.95 -51.93 -0.41 0.57 16 20 C -0.10 -1.24 2.39 -89.81 -0.21 -1.45 16 21 C -0.13 -1.41 7.64 -25.92 -0.20 -1.61 16 22 C -0.14 -1.55 8.08 -25.92 -0.21 -1.76 16 23 C -0.14 -1.81 6.66 -25.92 -0.17 -1.98 16 24 H 0.01 0.19 6.57 -51.93 -0.34 -0.16 16 25 H 0.08 2.20 6.07 -51.93 -0.32 1.88 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.07 1.99 6.07 -51.93 -0.32 1.68 16 29 H 0.02 0.45 7.60 -51.93 -0.39 0.06 16 30 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 31 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.01 0.24 8.13 -51.93 -0.42 -0.18 16 33 H 0.34 6.09 3.21 -39.29 -0.13 5.96 16 34 H 0.07 0.86 8.14 -51.92 -0.42 0.43 16 35 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.08 1.16 7.96 -51.93 -0.41 0.74 16 37 H 0.05 0.60 8.14 -51.92 -0.42 0.18 16 38 H 0.09 1.29 7.56 -51.92 -0.39 0.90 16 39 H 0.08 0.75 7.96 -51.93 -0.41 0.33 16 40 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 41 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.07 1.05 7.46 -51.93 -0.39 0.66 16 44 H 0.08 0.98 8.10 -51.93 -0.42 0.56 16 LS Contribution 329.39 15.07 4.96 4.96 Total: -1.00 -26.82 329.39 -9.89 -36.71 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -8.11 Total: 4.92 kcal Atomic # 6 Polarization: -24.40 SS G_CDS: -1.64 Total: -26.04 kcal Atomic # 7 Polarization: -36.74 SS G_CDS: -0.08 Total: -36.81 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -26.82 -9.89 -36.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459729881.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.954 kcal (2) G-P(sol) polarization free energy of solvation -26.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds