Wall clock time and date at job start Mon Mar 30 2020 06:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47454 * 2 1 4 4 C 1.50705 * 109.46892 * 239.99560 * 2 1 3 5 5 H 1.07996 * 120.00031 * 240.00251 * 4 2 1 6 6 C 1.37876 * 119.99789 * 60.00561 * 4 2 1 7 7 N 1.31509 * 120.00031 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 119.99810 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47432 * 60.00137 * 8 6 4 10 10 H 1.48503 * 109.47002 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.47012 * 299.99426 * 8 6 4 12 12 C 1.52998 * 109.46813 * 120.00112 * 2 1 3 13 13 N 1.46906 * 109.47160 * 299.99708 * 12 2 1 14 14 C 1.46905 * 110.99924 * 180.02562 * 13 12 2 15 15 H 1.08993 * 112.84704 * 336.19241 * 14 13 12 16 16 C 1.53777 * 113.61341 * 107.50250 * 14 13 12 17 17 C 1.53775 * 87.07992 * 89.11212 * 16 14 13 18 18 C 1.53779 * 87.08438 * 25.43258 * 17 16 14 19 19 H 1.09002 * 113.61731 * 89.11293 * 18 17 16 20 20 C 1.53000 * 113.69071 * 220.00724 * 18 17 16 21 21 C 1.53781 * 113.61533 * 256.55976 * 20 18 17 22 22 C 1.53784 * 87.08051 * 220.02009 * 21 20 18 23 23 C 1.53776 * 87.08125 * 25.43168 * 22 21 20 24 24 H 1.09002 * 109.46687 * 300.00357 * 1 2 3 25 25 H 1.09000 * 109.46701 * 59.99745 * 1 2 3 26 26 H 1.08998 * 109.47858 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46693 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.46897 * 299.99966 * 3 2 1 29 29 H 1.08998 * 109.47122 * 59.99749 * 3 2 1 30 30 H 0.97002 * 119.99994 * 179.97438 * 7 6 4 31 31 H 1.08998 * 109.47221 * 179.97438 * 12 2 1 32 32 H 1.09000 * 109.47246 * 59.99729 * 12 2 1 33 33 H 1.00895 * 110.99956 * 56.04299 * 13 12 2 34 34 H 1.09008 * 113.61204 * 203.66327 * 16 14 13 35 35 H 1.08998 * 113.61354 * 334.47994 * 16 14 13 36 36 H 1.08993 * 113.61636 * 270.87622 * 17 16 14 37 37 H 1.09008 * 113.61006 * 139.97865 * 17 16 14 38 38 H 1.09008 * 112.84673 * 27.86325 * 20 18 17 39 39 H 1.08995 * 113.61341 * 334.56757 * 21 20 18 40 40 H 1.09007 * 113.61227 * 105.46818 * 21 20 18 41 41 H 1.09006 * 113.60716 * 270.88155 * 22 21 20 42 42 H 1.08996 * 113.61322 * 139.98419 * 22 21 20 43 43 H 1.09004 * 113.61598 * 220.02393 * 23 22 21 44 44 H 1.08992 * 113.69383 * 89.12728 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9429 0.8295 -2.6034 8 14 2.3213 -1.1206 -4.0079 9 1 1.8256 -2.5204 -4.0077 10 1 1.8269 -0.4201 -5.2204 11 1 3.8063 -1.1212 -4.0081 12 6 2.0399 -0.7213 1.2492 13 7 1.5503 -0.0287 2.4487 14 6 2.0218 -0.6946 3.6704 15 1 2.2679 -1.7445 3.5120 16 6 3.1129 0.0901 4.4176 17 6 1.9761 0.7947 5.1765 18 6 1.1200 -0.4506 4.8919 19 1 1.2036 -1.2222 5.6574 20 6 -0.3310 -0.1293 4.5283 21 6 -1.3242 -0.3843 5.6743 22 6 -2.2851 -0.9436 4.6119 23 6 -1.0404 -1.2613 3.7666 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3635 -1.0276 0.0005 27 1 3.1301 1.4423 -0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.6768 1.9563 0.8899 30 1 0.7089 1.1612 -3.4844 31 1 3.1299 -0.7217 1.2491 32 1 1.6766 -1.7489 1.2492 33 1 0.5438 0.0415 2.4401 34 1 3.7414 -0.5337 5.0534 35 1 3.6893 0.7559 3.7754 36 1 1.6139 1.6959 4.6819 37 1 2.1867 0.9473 6.2351 38 1 -0.4434 0.8490 4.0608 39 1 -0.9822 -1.1315 6.3903 40 1 -1.6837 0.5275 6.1516 41 1 -2.9331 -0.1877 4.1681 42 1 -2.8290 -1.8299 4.9385 43 1 -1.1707 -1.0575 2.7038 44 1 -0.6198 -2.2480 3.9600 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459729881.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:12 Heat of formation + Delta-G solvation = 13.849348 kcal Electronic energy + Delta-G solvation = -19741.419844 eV Core-core repulsion = 17079.832003 eV Total energy + Delta-G solvation = -2661.587840 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.10920 -38.50523 -37.66375 -34.37601 -31.99199 -28.45154 -27.54280 -27.26493 -26.67538 -25.89281 -24.55860 -23.64019 -20.48461 -20.15699 -19.65661 -17.85587 -17.20540 -16.71986 -16.46047 -15.90259 -15.69872 -15.12965 -14.55787 -14.38066 -14.06210 -13.82496 -13.44799 -13.23534 -13.14330 -12.93910 -12.65184 -12.59799 -12.57990 -12.50137 -12.31104 -12.09489 -12.07387 -11.56810 -11.51983 -11.35278 -11.25365 -11.00523 -10.62915 -10.60188 -10.44753 -10.34485 -9.07670 -7.96920 -6.13985 1.43006 1.43585 1.50668 2.46172 3.24890 3.36822 3.46490 3.75850 3.85938 3.99372 4.04129 4.13507 4.33282 4.38137 4.56125 4.57454 4.63201 4.76662 4.82774 4.84901 4.89652 4.92389 5.03054 5.05605 5.08479 5.11645 5.14425 5.19047 5.25176 5.27453 5.37352 5.42019 5.50006 5.52689 5.60048 5.68981 5.71597 5.76064 6.18972 6.29904 6.38488 6.51613 6.73173 6.95195 7.53433 9.01215 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.028430 B = 0.005644 C = 0.005134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.653249 B = 4959.651898 C = 5452.391341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.060 3.940 3 C -0.104 4.104 4 C -0.528 4.528 5 H 0.043 0.957 6 C 0.023 3.977 7 N -0.903 5.903 8 Si 0.945 3.055 9 H -0.276 1.276 10 H -0.284 1.284 11 H -0.276 1.276 12 C 0.093 3.907 13 N -0.669 5.669 14 C 0.054 3.946 15 H 0.039 0.961 16 C -0.135 4.135 17 C -0.115 4.115 18 C -0.093 4.093 19 H 0.105 0.895 20 C -0.104 4.104 21 C -0.121 4.121 22 C -0.138 4.138 23 C -0.148 4.148 24 H 0.028 0.972 25 H 0.057 0.943 26 H 0.015 0.985 27 H 0.009 0.991 28 H 0.049 0.951 29 H 0.032 0.968 30 H 0.258 0.742 31 H 0.043 0.957 32 H 0.003 0.997 33 H 0.344 0.656 34 H 0.091 0.909 35 H 0.053 0.947 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.090 0.910 40 H 0.072 0.928 41 H 0.078 0.922 42 H 0.074 0.926 43 H 0.046 0.954 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.914 -2.240 16.756 17.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.060 3.940 3 C -0.162 4.162 4 C -0.567 4.567 5 H 0.061 0.939 6 C -0.176 4.176 7 N -0.542 5.542 8 Si 0.771 3.229 9 H -0.201 1.201 10 H -0.210 1.210 11 H -0.202 1.202 12 C -0.036 4.036 13 N -0.303 5.303 14 C -0.057 4.057 15 H 0.057 0.943 16 C -0.173 4.173 17 C -0.152 4.152 18 C -0.112 4.112 19 H 0.123 0.877 20 C -0.123 4.123 21 C -0.158 4.158 22 C -0.176 4.176 23 C -0.185 4.185 24 H 0.047 0.953 25 H 0.075 0.925 26 H 0.034 0.966 27 H 0.028 0.972 28 H 0.068 0.932 29 H 0.051 0.949 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.022 0.978 33 H 0.167 0.833 34 H 0.110 0.890 35 H 0.072 0.928 36 H 0.089 0.911 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.108 0.892 40 H 0.091 0.909 41 H 0.097 0.903 42 H 0.093 0.907 43 H 0.064 0.936 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.504 -1.660 16.603 16.873 hybrid contribution -0.063 -1.241 -1.467 1.922 sum -2.567 -2.901 15.136 15.624 Atomic orbital electron populations 1.21628 0.98174 0.97846 0.99734 1.18132 0.92347 0.92842 0.90694 1.21462 0.97019 0.98433 0.99318 1.21392 1.31352 1.11908 0.92007 0.93900 1.25530 0.95298 0.95633 1.01134 1.69953 1.37333 1.23569 1.23379 0.85829 0.78642 0.78802 0.79589 1.20109 1.20952 1.20170 1.21813 0.97963 0.93622 0.90195 1.60412 1.16817 1.52791 1.00300 1.22735 0.97883 0.95042 0.90018 0.94267 1.22962 0.96393 0.99408 0.98526 1.22723 0.95813 0.96651 1.00052 1.22791 0.92752 0.98942 0.96691 0.87711 1.22445 0.93445 0.98331 0.98031 1.22878 0.95733 1.01427 0.95793 1.22803 0.96010 1.01369 0.97380 1.22971 0.98093 0.99048 0.98431 0.95276 0.92450 0.96605 0.97174 0.93208 0.94871 0.93264 0.93847 0.97847 0.83336 0.89009 0.92833 0.91135 0.90336 0.90154 0.89170 0.90879 0.90313 0.90726 0.93563 0.90430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.58 7.92 71.98 0.57 -5.01 16 2 C 0.06 2.99 0.57 -52.93 -0.03 2.96 16 3 C -0.10 -5.24 8.09 71.98 0.58 -4.65 16 4 C -0.53 -29.13 8.01 25.60 0.21 -28.93 16 5 H 0.04 2.37 7.74 -2.91 -0.02 2.35 16 6 C 0.02 1.27 5.15 84.66 0.44 1.71 16 7 N -0.90 -51.03 9.35 21.45 0.20 -50.83 16 8 Si 0.94 43.88 29.54 68.60 2.03 45.91 16 9 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 10 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 11 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 12 C 0.09 4.03 4.43 86.30 0.38 4.41 16 13 N -0.67 -23.98 5.61 -488.85 -2.74 -26.72 16 14 C 0.05 1.58 3.85 45.44 0.18 1.75 16 15 H 0.04 1.21 7.87 -2.39 -0.02 1.19 16 16 C -0.13 -3.50 7.88 31.12 0.25 -3.25 16 17 C -0.12 -2.62 7.56 31.12 0.24 -2.38 16 18 C -0.09 -2.11 3.49 -10.27 -0.04 -2.15 16 19 H 0.10 2.02 7.95 -2.39 -0.02 2.00 16 20 C -0.10 -2.38 2.39 -10.27 -0.02 -2.40 16 21 C -0.12 -2.17 7.64 31.12 0.24 -1.93 16 22 C -0.14 -2.72 8.08 31.12 0.25 -2.47 16 23 C -0.15 -3.62 6.66 31.12 0.21 -3.41 16 24 H 0.03 1.24 6.57 -2.39 -0.02 1.22 16 25 H 0.06 3.07 6.07 -2.39 -0.01 3.05 16 26 H 0.01 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.01 0.47 8.14 -2.38 -0.02 0.45 16 28 H 0.05 2.73 6.07 -2.39 -0.01 2.71 16 29 H 0.03 1.52 7.60 -2.39 -0.02 1.50 16 30 H 0.26 14.03 8.31 -92.71 -0.77 13.26 16 31 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.00 0.15 8.13 -2.39 -0.02 0.13 16 33 H 0.34 12.14 3.21 -89.70 -0.29 11.85 16 34 H 0.09 1.99 8.14 -2.38 -0.02 1.97 16 35 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.07 1.82 7.96 -2.39 -0.02 1.80 16 37 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 38 H 0.08 2.09 7.56 -2.38 -0.02 2.07 16 39 H 0.09 1.40 7.96 -2.39 -0.02 1.38 16 40 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 41 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 42 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.05 1.35 7.46 -2.38 -0.02 1.33 16 44 H 0.08 1.87 8.10 -2.39 -0.02 1.85 16 Total: -1.00 -57.24 329.39 3.57 -53.66 By element: Atomic # 1 Polarization: 23.08 SS G_CDS: 0.65 Total: 23.73 kcal Atomic # 6 Polarization: -49.19 SS G_CDS: 3.44 Total: -45.75 kcal Atomic # 7 Polarization: -75.01 SS G_CDS: -2.54 Total: -77.55 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -57.24 3.57 -53.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459729881.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.512 kcal (2) G-P(sol) polarization free energy of solvation -57.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds