Wall clock time and date at job start Mon Mar 30 2020 06:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46826 * 2 1 4 4 H 1.09003 * 110.05561 * 306.41598 * 3 2 1 5 5 C 1.54265 * 110.03386 * 67.83409 * 3 2 1 6 6 C 1.54890 * 104.19575 * 142.89497 * 5 3 2 7 7 C 1.55021 * 102.75549 * 322.04755 * 6 5 3 8 8 C 1.53872 * 110.03389 * 185.00462 * 3 2 1 9 9 H 1.08998 * 110.03014 * 0.04438 * 8 3 2 10 10 N 1.46896 * 110.03872 * 121.42802 * 8 3 2 11 11 C 1.46899 * 111.00473 * 204.31095 * 10 8 3 12 12 H 1.08996 * 110.43017 * 323.90929 * 11 10 8 13 13 C 1.54265 * 110.48548 * 86.45526 * 11 10 8 14 14 C 1.53873 * 106.59997 * 142.42599 * 13 11 10 15 15 C 1.54268 * 106.59703 * 359.97438 * 14 13 11 16 16 H 1.09002 * 110.48435 * 95.07241 * 15 14 13 17 17 C 1.50704 * 110.48600 * 217.58396 * 15 14 13 18 18 H 1.08001 * 120.00134 * 116.76106 * 17 15 14 19 19 C 1.37882 * 119.99806 * 296.76016 * 17 15 14 20 20 N 1.31507 * 119.99801 * 359.97438 * 19 17 15 21 21 Si 1.86796 * 119.99760 * 180.02562 * 19 17 15 22 22 H 1.48508 * 109.47237 * 59.99958 * 21 19 17 23 23 H 1.48499 * 109.47166 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.47239 * 299.99824 * 21 19 17 25 25 C 1.54888 * 110.59929 * 201.29745 * 11 10 8 26 26 H 1.08999 * 109.46875 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47234 * 299.99476 * 1 2 3 28 28 H 1.09000 * 109.47142 * 59.99932 * 1 2 3 29 29 H 1.09001 * 109.47234 * 240.00524 * 2 1 3 30 30 H 1.08996 * 109.47311 * 119.99586 * 2 1 3 31 31 H 1.08999 * 110.48839 * 261.57376 * 5 3 2 32 32 H 1.08999 * 110.48698 * 24.08402 * 5 3 2 33 33 H 1.08997 * 110.75861 * 80.37059 * 6 5 3 34 34 H 1.08996 * 110.75711 * 203.56250 * 6 5 3 35 35 H 1.08999 * 110.50212 * 279.29971 * 7 6 5 36 36 H 1.09001 * 110.52058 * 156.61284 * 7 6 5 37 37 H 1.00901 * 111.00127 * 328.26796 * 10 8 3 38 38 H 1.08993 * 110.03585 * 23.13094 * 13 11 10 39 39 H 1.09005 * 110.02598 * 261.70661 * 13 11 10 40 40 H 1.09002 * 110.03017 * 240.71676 * 14 13 11 41 41 H 1.08992 * 110.03600 * 119.28231 * 14 13 11 42 42 H 0.97003 * 119.99704 * 180.02562 * 20 19 17 43 43 H 1.08992 * 110.76047 * 85.00815 * 25 11 10 44 44 H 1.09000 * 110.75534 * 321.63384 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5914 1.9975 -0.8240 5 6 1.7005 2.1230 1.3422 6 6 2.9288 3.0202 1.6345 7 6 4.1135 2.1490 1.1438 8 6 3.5734 1.4595 -0.1261 9 1 3.9542 0.4401 -0.1881 10 7 3.9719 2.2186 -1.3189 11 6 5.2968 1.7969 -1.7931 12 1 5.9436 1.5554 -0.9496 13 6 5.1709 0.5864 -2.7410 14 6 6.2221 0.7832 -3.8473 15 6 6.9497 2.1068 -3.5334 16 1 7.8636 1.9156 -2.9709 17 6 7.2611 2.8521 -4.8057 18 1 6.8167 3.8195 -4.9873 19 6 8.1133 2.2988 -5.7378 20 7 8.6548 1.1211 -5.5162 21 14 8.4998 3.2230 -7.3144 22 1 9.1287 4.5268 -6.9826 23 1 9.4347 2.4197 -8.1426 24 1 7.2440 3.4576 -8.0712 25 6 5.9387 2.9007 -2.6697 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8900 31 1 0.7998 2.7291 1.2456 32 1 1.5749 1.3772 2.1271 33 1 2.8720 3.9495 1.0679 34 1 3.0125 3.2247 2.7018 35 1 4.3795 1.4072 1.8969 36 1 4.9732 2.7741 0.9023 37 1 3.2819 2.1320 -2.0500 38 1 4.1721 0.5552 -3.1762 39 1 5.3703 -0.3366 -2.1964 40 1 5.7334 0.8477 -4.8195 41 1 6.9316 -0.0442 -3.8397 42 1 9.2546 0.7320 -6.1718 43 1 6.4529 3.6356 -2.0505 44 1 5.1880 3.3806 -3.2976 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000576825797.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:33 Heat of formation + Delta-G solvation = -41.648145 kcal Electronic energy + Delta-G solvation = -19130.283828 eV Core-core repulsion = 16466.289435 eV Total energy + Delta-G solvation = -2663.994392 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.21195 -37.15003 -33.69438 -32.89321 -31.59931 -28.02471 -27.69385 -27.56957 -25.53121 -23.48317 -22.38033 -20.57765 -19.67347 -19.10593 -18.84299 -16.20306 -16.13000 -15.28886 -14.83580 -14.56183 -14.40848 -14.01013 -13.62692 -13.17054 -12.79343 -12.41091 -12.34240 -11.98755 -11.92755 -11.67450 -11.36869 -11.11505 -10.94765 -10.91276 -10.66397 -10.60696 -10.55153 -10.47631 -10.46265 -10.39990 -9.98549 -9.77864 -9.47256 -9.02946 -8.66920 -8.32006 -7.85200 -5.94868 -3.97011 3.35719 3.40094 3.43000 4.41170 4.50283 4.61399 4.64082 4.90492 5.12019 5.16178 5.26756 5.36921 5.52502 5.56842 5.58996 5.62619 5.69848 5.71680 5.75816 5.86101 5.90529 5.91335 5.99377 6.06797 6.10837 6.17105 6.24378 6.32387 6.42381 6.45002 6.56294 6.74664 6.82010 6.91969 7.10734 7.25499 7.41620 7.64591 7.77604 7.84437 7.97674 8.09915 8.54549 9.06258 9.66610 11.14935 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.037383 B = 0.004310 C = 0.004132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.824998 B = 6494.286862 C = 6775.457391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C -0.094 4.094 4 H 0.077 0.923 5 C -0.115 4.115 6 C -0.118 4.118 7 C -0.114 4.114 8 C 0.085 3.915 9 H 0.043 0.957 10 N -0.676 5.676 11 C 0.081 3.919 12 H 0.070 0.930 13 C -0.152 4.152 14 C -0.093 4.093 15 C 0.047 3.953 16 H 0.027 0.973 17 C -0.511 4.511 18 H 0.054 0.946 19 C 0.061 3.939 20 N -0.892 5.892 21 Si 0.888 3.112 22 H -0.277 1.277 23 H -0.289 1.289 24 H -0.278 1.278 25 C -0.099 4.099 26 H 0.050 0.950 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.073 0.927 37 H 0.336 0.664 38 H 0.046 0.954 39 H 0.041 0.959 40 H 0.049 0.951 41 H 0.051 0.949 42 H 0.259 0.741 43 H 0.047 0.953 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.621 -1.369 12.769 18.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C -0.113 4.113 4 H 0.095 0.905 5 C -0.152 4.152 6 C -0.156 4.156 7 C -0.152 4.152 8 C -0.025 4.025 9 H 0.061 0.939 10 N -0.307 5.307 11 C -0.028 4.028 12 H 0.088 0.912 13 C -0.191 4.191 14 C -0.132 4.132 15 C 0.028 3.972 16 H 0.045 0.955 17 C -0.549 4.549 18 H 0.073 0.927 19 C -0.140 4.140 20 N -0.530 5.530 21 Si 0.716 3.284 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.204 1.204 25 C -0.137 4.137 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.092 0.908 37 H 0.156 0.844 38 H 0.064 0.936 39 H 0.060 0.940 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.065 0.935 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.259 -0.977 13.048 18.628 hybrid contribution 0.072 -0.592 -1.397 1.519 sum -13.188 -1.569 11.650 17.667 Atomic orbital electron populations 1.21777 0.95959 1.01291 1.01791 1.21653 0.95766 0.96303 1.01884 1.22027 0.95033 0.95713 0.98499 0.90499 1.22382 0.98003 0.98382 0.96469 1.22437 0.94572 0.98675 0.99900 1.22409 0.98452 0.98572 0.95815 1.22181 0.93342 0.95129 0.91817 0.93875 1.60790 1.04340 1.57740 1.07782 1.22565 0.89141 0.94952 0.96165 0.91163 1.22941 0.99854 0.97588 0.98726 1.22009 0.95394 1.00369 0.95382 1.19445 0.92662 0.91084 0.94027 0.95486 1.21144 1.27033 1.03945 1.02819 0.92727 1.24983 0.95870 0.94958 0.98206 1.69966 1.31332 1.16272 1.35451 0.86722 0.78139 0.79881 0.83615 1.20314 1.21429 1.20356 1.22512 0.98358 0.96198 0.96648 0.93066 0.92723 0.92787 0.92140 0.92067 0.92139 0.91970 0.91153 0.92398 0.92391 0.90833 0.84444 0.93558 0.94020 0.93217 0.92974 0.93154 0.93464 0.92414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.77 37.16 0.36 -0.94 16 2 C -0.12 -1.18 5.06 -26.73 -0.14 -1.31 16 3 C -0.09 -1.02 2.61 -89.50 -0.23 -1.26 16 4 H 0.08 0.88 7.48 -51.93 -0.39 0.49 16 5 C -0.11 -1.13 5.53 -25.07 -0.14 -1.27 16 6 C -0.12 -1.27 6.91 -24.67 -0.17 -1.44 16 7 C -0.11 -1.41 6.41 -25.00 -0.16 -1.57 16 8 C 0.09 1.11 2.74 -66.60 -0.18 0.93 16 9 H 0.04 0.60 7.30 -51.93 -0.38 0.22 16 10 N -0.68 -10.28 6.10 -96.85 -0.59 -10.87 16 11 C 0.08 1.46 2.95 -66.06 -0.19 1.27 16 12 H 0.07 1.28 7.83 -51.93 -0.41 0.87 16 13 C -0.15 -2.87 6.34 -25.61 -0.16 -3.04 16 14 C -0.09 -2.20 5.50 -25.61 -0.14 -2.34 16 15 C 0.05 1.18 2.75 -90.12 -0.25 0.93 16 16 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 17 C -0.51 -14.25 8.39 -34.44 -0.29 -14.54 16 18 H 0.05 1.51 7.78 -52.49 -0.41 1.10 16 19 C 0.06 1.72 5.34 -17.82 -0.10 1.63 16 20 N -0.89 -26.03 12.48 55.43 0.69 -25.33 16 21 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 C -0.10 -2.09 5.98 -24.75 -0.15 -2.24 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.44 7.51 -51.93 -0.39 0.05 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.59 8.00 -51.93 -0.42 0.18 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.57 7.76 -51.93 -0.40 0.17 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 1.02 8.01 -51.93 -0.42 0.61 16 37 H 0.34 5.02 7.45 -39.29 -0.29 4.73 16 38 H 0.05 0.82 7.58 -51.93 -0.39 0.43 16 39 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.05 1.25 7.83 -51.93 -0.41 0.85 16 41 H 0.05 1.32 7.99 -51.93 -0.41 0.90 16 42 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 43 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.06 1.24 8.05 -51.93 -0.42 0.83 16 LS Contribution 335.99 15.07 5.06 5.06 Total: -1.00 -27.90 335.99 -10.29 -38.18 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -8.50 Total: 1.57 kcal Atomic # 6 Polarization: -23.25 SS G_CDS: -1.94 Total: -25.18 kcal Atomic # 7 Polarization: -36.31 SS G_CDS: 0.10 Total: -36.20 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -27.90 -10.29 -38.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576825797.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.466 kcal (2) G-P(sol) polarization free energy of solvation -27.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds