Wall clock time and date at job start Mon Mar 30 2020 06:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46826 * 2 1 4 4 H 1.09003 * 110.05561 * 306.41598 * 3 2 1 5 5 C 1.54265 * 110.03386 * 67.83409 * 3 2 1 6 6 C 1.54890 * 104.19575 * 142.89497 * 5 3 2 7 7 C 1.55021 * 102.75549 * 322.04755 * 6 5 3 8 8 C 1.53872 * 110.03389 * 185.00462 * 3 2 1 9 9 H 1.08998 * 110.03014 * 0.04438 * 8 3 2 10 10 N 1.46896 * 110.03872 * 121.42802 * 8 3 2 11 11 C 1.46899 * 111.00473 * 204.31095 * 10 8 3 12 12 H 1.08996 * 110.43017 * 323.90929 * 11 10 8 13 13 C 1.54265 * 110.48548 * 86.45526 * 11 10 8 14 14 C 1.53873 * 106.59997 * 142.42599 * 13 11 10 15 15 C 1.54268 * 106.59703 * 359.97438 * 14 13 11 16 16 H 1.09002 * 110.48435 * 95.07241 * 15 14 13 17 17 C 1.50704 * 110.48600 * 217.58396 * 15 14 13 18 18 H 1.08001 * 120.00134 * 116.76106 * 17 15 14 19 19 C 1.37882 * 119.99806 * 296.76016 * 17 15 14 20 20 N 1.31507 * 119.99801 * 359.97438 * 19 17 15 21 21 Si 1.86796 * 119.99760 * 180.02562 * 19 17 15 22 22 H 1.48508 * 109.47237 * 59.99958 * 21 19 17 23 23 H 1.48499 * 109.47166 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.47239 * 299.99824 * 21 19 17 25 25 C 1.54888 * 110.59929 * 201.29745 * 11 10 8 26 26 H 1.08999 * 109.46875 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47234 * 299.99476 * 1 2 3 28 28 H 1.09000 * 109.47142 * 59.99932 * 1 2 3 29 29 H 1.09001 * 109.47234 * 240.00524 * 2 1 3 30 30 H 1.08996 * 109.47311 * 119.99586 * 2 1 3 31 31 H 1.08999 * 110.48839 * 261.57376 * 5 3 2 32 32 H 1.08999 * 110.48698 * 24.08402 * 5 3 2 33 33 H 1.08997 * 110.75861 * 80.37059 * 6 5 3 34 34 H 1.08996 * 110.75711 * 203.56250 * 6 5 3 35 35 H 1.08999 * 110.50212 * 279.29971 * 7 6 5 36 36 H 1.09001 * 110.52058 * 156.61284 * 7 6 5 37 37 H 1.00901 * 111.00127 * 328.26796 * 10 8 3 38 38 H 1.08993 * 110.03585 * 23.13094 * 13 11 10 39 39 H 1.09005 * 110.02598 * 261.70661 * 13 11 10 40 40 H 1.09002 * 110.03017 * 240.71676 * 14 13 11 41 41 H 1.08992 * 110.03600 * 119.28231 * 14 13 11 42 42 H 0.97003 * 119.99704 * 180.02562 * 20 19 17 43 43 H 1.08992 * 110.76047 * 85.00815 * 25 11 10 44 44 H 1.09000 * 110.75534 * 321.63384 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5914 1.9975 -0.8240 5 6 1.7005 2.1230 1.3422 6 6 2.9288 3.0202 1.6345 7 6 4.1135 2.1490 1.1438 8 6 3.5734 1.4595 -0.1261 9 1 3.9542 0.4401 -0.1881 10 7 3.9719 2.2186 -1.3189 11 6 5.2968 1.7969 -1.7931 12 1 5.9436 1.5554 -0.9496 13 6 5.1709 0.5864 -2.7410 14 6 6.2221 0.7832 -3.8473 15 6 6.9497 2.1068 -3.5334 16 1 7.8636 1.9156 -2.9709 17 6 7.2611 2.8521 -4.8057 18 1 6.8167 3.8195 -4.9873 19 6 8.1133 2.2988 -5.7378 20 7 8.6548 1.1211 -5.5162 21 14 8.4998 3.2230 -7.3144 22 1 9.1287 4.5268 -6.9826 23 1 9.4347 2.4197 -8.1426 24 1 7.2440 3.4576 -8.0712 25 6 5.9387 2.9007 -2.6697 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8900 31 1 0.7998 2.7291 1.2456 32 1 1.5749 1.3772 2.1271 33 1 2.8720 3.9495 1.0679 34 1 3.0125 3.2247 2.7018 35 1 4.3795 1.4072 1.8969 36 1 4.9732 2.7741 0.9023 37 1 3.2819 2.1320 -2.0500 38 1 4.1721 0.5552 -3.1762 39 1 5.3703 -0.3366 -2.1964 40 1 5.7334 0.8477 -4.8195 41 1 6.9316 -0.0442 -3.8397 42 1 9.2546 0.7320 -6.1718 43 1 6.4529 3.6356 -2.0505 44 1 5.1880 3.3806 -3.2976 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000576825797.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:32 Heat of formation + Delta-G solvation = -55.841692 kcal Electronic energy + Delta-G solvation = -19130.899306 eV Core-core repulsion = 16466.289435 eV Total energy + Delta-G solvation = -2664.609871 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.31589 -38.67295 -35.23822 -34.00724 -33.21147 -29.85027 -29.04647 -28.43704 -27.01706 -25.32290 -23.20646 -21.70378 -21.10556 -20.51440 -20.28578 -18.27461 -17.29690 -16.59240 -16.19776 -16.04255 -15.72474 -15.31726 -14.69946 -14.40597 -14.10133 -13.86199 -13.60470 -13.54279 -13.16526 -12.90408 -12.76787 -12.61269 -12.54506 -12.30095 -12.07259 -11.80972 -11.75184 -11.58095 -11.57722 -11.43079 -11.34317 -11.31238 -11.25078 -10.87004 -10.75962 -10.47328 -9.15145 -8.11328 -6.21071 1.41071 1.42675 1.50274 2.43896 3.18958 3.28049 3.69431 3.76214 3.97286 4.06466 4.08969 4.28311 4.33374 4.37325 4.49852 4.62623 4.70220 4.74087 4.81554 4.82966 4.85432 4.94391 4.99383 5.03371 5.06199 5.12261 5.15767 5.18407 5.21374 5.25936 5.31462 5.33603 5.41199 5.44227 5.48604 5.54842 5.62446 5.66006 5.92966 5.99396 6.30307 6.43136 6.61842 6.90405 7.46319 8.97618 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.037383 B = 0.004310 C = 0.004132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.824998 B = 6494.286862 C = 6775.457391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C -0.089 4.089 4 H 0.072 0.928 5 C -0.109 4.109 6 C -0.115 4.115 7 C -0.117 4.117 8 C 0.083 3.917 9 H 0.037 0.963 10 N -0.673 5.673 11 C 0.099 3.901 12 H 0.070 0.930 13 C -0.139 4.139 14 C -0.083 4.083 15 C 0.037 3.963 16 H -0.005 1.005 17 C -0.532 4.532 18 H 0.053 0.947 19 C 0.011 3.989 20 N -0.922 5.922 21 Si 0.953 3.047 22 H -0.271 1.271 23 H -0.285 1.285 24 H -0.270 1.270 25 C -0.089 4.089 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.051 0.949 29 H 0.049 0.951 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.059 0.941 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.053 0.947 37 H 0.340 0.660 38 H 0.063 0.937 39 H 0.055 0.945 40 H 0.027 0.973 41 H 0.025 0.975 42 H 0.259 0.741 43 H 0.046 0.954 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.438 -1.089 13.637 20.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C -0.108 4.108 4 H 0.091 0.909 5 C -0.146 4.146 6 C -0.153 4.153 7 C -0.155 4.155 8 C -0.027 4.027 9 H 0.055 0.945 10 N -0.304 5.304 11 C -0.012 4.012 12 H 0.088 0.912 13 C -0.178 4.178 14 C -0.122 4.122 15 C 0.018 3.982 16 H 0.013 0.987 17 C -0.570 4.570 18 H 0.071 0.929 19 C -0.188 4.188 20 N -0.561 5.561 21 Si 0.779 3.221 22 H -0.196 1.196 23 H -0.210 1.210 24 H -0.195 1.195 25 C -0.128 4.128 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.077 0.923 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.160 0.840 38 H 0.081 0.919 39 H 0.073 0.927 40 H 0.046 0.954 41 H 0.044 0.956 42 H 0.068 0.932 43 H 0.065 0.935 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -15.094 -0.688 13.928 20.550 hybrid contribution 0.668 -0.678 -1.643 1.899 sum -14.426 -1.366 12.284 18.997 Atomic orbital electron populations 1.21754 0.94802 1.01861 1.02134 1.21626 0.96741 0.95406 1.01604 1.21983 0.93144 0.96547 0.99138 0.90920 1.22362 0.97856 0.98435 0.95958 1.22412 0.94252 0.98022 1.00600 1.22424 0.98398 0.98817 0.95837 1.22290 0.95084 0.94415 0.90882 0.94537 1.60719 1.03052 1.58117 1.08511 1.22243 0.90630 0.92969 0.95316 0.91202 1.22820 0.98945 0.98706 0.97352 1.21786 0.95813 0.98554 0.96061 1.19446 0.92637 0.92520 0.93627 0.98682 1.21524 1.27278 1.04147 1.04055 0.92922 1.25781 0.95732 0.95779 1.01494 1.70098 1.31845 1.17643 1.36518 0.85687 0.78140 0.78704 0.79597 1.19597 1.21021 1.19546 1.22334 0.97348 0.96624 0.96450 0.92440 0.91852 0.92970 0.93183 0.91640 0.91083 0.90795 0.92267 0.90929 0.91279 0.92799 0.84014 0.91880 0.92666 0.95426 0.95576 0.93180 0.93480 0.92727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.77 71.98 0.70 -1.46 16 2 C -0.12 -2.03 5.06 30.59 0.15 -1.87 16 3 C -0.09 -1.73 2.61 -10.07 -0.03 -1.76 16 4 H 0.07 1.50 7.48 -2.39 -0.02 1.48 16 5 C -0.11 -1.80 5.53 31.67 0.18 -1.63 16 6 C -0.12 -2.21 6.91 31.93 0.22 -1.99 16 7 C -0.12 -2.68 6.41 31.72 0.20 -2.47 16 8 C 0.08 2.01 2.74 45.64 0.12 2.13 16 9 H 0.04 0.95 7.30 -2.39 -0.02 0.93 16 10 N -0.67 -19.54 6.10 -460.32 -2.81 -22.35 16 11 C 0.10 3.49 2.95 45.99 0.14 3.62 16 12 H 0.07 2.50 7.83 -2.39 -0.02 2.49 16 13 C -0.14 -5.17 6.34 31.32 0.20 -4.97 16 14 C -0.08 -4.04 5.50 31.32 0.17 -3.87 16 15 C 0.04 1.90 2.75 -10.47 -0.03 1.87 16 16 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 17 C -0.53 -30.29 8.39 25.60 0.21 -30.07 16 18 H 0.05 2.94 7.78 -2.91 -0.02 2.92 16 19 C 0.01 0.60 5.34 84.66 0.45 1.06 16 20 N -0.92 -55.14 12.48 21.45 0.27 -54.88 16 21 Si 0.95 44.65 29.54 68.60 2.03 46.68 16 22 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 23 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 24 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 25 C -0.09 -3.80 5.98 31.88 0.19 -3.61 16 26 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.06 0.82 7.51 -2.39 -0.02 0.80 16 28 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.06 1.09 8.00 -2.39 -0.02 1.07 16 31 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.07 1.09 7.76 -2.39 -0.02 1.07 16 33 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.05 1.45 8.01 -2.39 -0.02 1.43 16 37 H 0.34 9.55 7.45 -89.69 -0.67 8.88 16 38 H 0.06 2.14 7.58 -2.39 -0.02 2.12 16 39 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 40 H 0.03 1.41 7.83 -2.39 -0.02 1.39 16 41 H 0.03 1.35 7.99 -2.39 -0.02 1.33 16 42 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 43 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 44 H 0.05 2.34 8.05 -2.39 -0.02 2.32 16 Total: -1.00 -60.59 335.99 2.64 -57.95 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: 0.26 Total: 17.62 kcal Atomic # 6 Polarization: -47.91 SS G_CDS: 2.89 Total: -45.02 kcal Atomic # 7 Polarization: -74.68 SS G_CDS: -2.54 Total: -77.22 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -60.59 2.64 -57.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576825797.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.106 kcal (2) G-P(sol) polarization free energy of solvation -60.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds