Wall clock time and date at job start Mon Mar 30 2020 06:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50706 * 120.00351 * 2 1 4 4 C 1.52996 * 109.47147 * 125.00182 * 3 2 1 5 5 H 1.09000 * 110.43832 * 56.08942 * 4 3 2 6 6 C 1.54891 * 110.48854 * 293.54578 * 4 3 2 7 7 C 1.54882 * 102.75138 * 203.38264 * 6 4 3 8 8 C 1.54268 * 104.19603 * 37.93909 * 7 6 4 9 9 H 1.08999 * 110.02743 * 95.67750 * 8 7 6 10 10 N 1.46900 * 110.03322 * 217.10740 * 8 7 6 11 11 C 1.46909 * 110.99985 * 273.54922 * 10 8 7 12 12 C 1.52991 * 109.46979 * 180.02562 * 11 10 8 13 13 C 1.52999 * 109.47229 * 299.99662 * 12 11 10 14 14 C 1.52998 * 109.47497 * 60.00065 * 12 11 10 15 15 C 1.50701 * 109.47103 * 180.02562 * 12 11 10 16 16 H 1.08006 * 119.99923 * 1.23684 * 15 12 11 17 17 C 1.37883 * 120.00344 * 181.24027 * 15 12 11 18 18 N 1.31508 * 120.00121 * 194.11089 * 17 15 12 19 19 Si 1.86802 * 119.99531 * 14.10851 * 17 15 12 20 20 H 1.48504 * 109.46781 * 84.53780 * 19 17 15 21 21 H 1.48498 * 109.46574 * 204.53169 * 19 17 15 22 22 H 1.48494 * 109.47486 * 324.53353 * 19 17 15 23 23 C 1.53875 * 106.60051 * 336.39307 * 8 7 6 24 24 H 1.07995 * 120.00590 * 180.02562 * 1 2 3 25 25 H 1.08008 * 119.99518 * 359.72133 * 1 2 3 26 26 H 1.08007 * 119.99945 * 180.02562 * 2 1 3 27 27 H 1.09002 * 109.46713 * 245.00328 * 3 2 1 28 28 H 1.09004 * 109.46821 * 4.99756 * 3 2 1 29 29 H 1.09002 * 110.75401 * 321.69695 * 6 4 3 30 30 H 1.09003 * 110.75539 * 84.87571 * 6 4 3 31 31 H 1.08992 * 110.48791 * 156.62314 * 7 6 4 32 32 H 1.09008 * 110.48204 * 279.26316 * 7 6 4 33 33 H 1.00900 * 111.00136 * 37.49918 * 10 8 7 34 34 H 1.08998 * 109.46523 * 299.99921 * 11 10 8 35 35 H 1.08999 * 109.46836 * 59.99608 * 11 10 8 36 36 H 1.09007 * 109.47107 * 69.51774 * 13 12 11 37 37 H 1.08998 * 109.47485 * 189.51874 * 13 12 11 38 38 H 1.08999 * 109.47002 * 309.52145 * 13 12 11 39 39 H 1.08993 * 109.47065 * 59.99539 * 14 12 11 40 40 H 1.08997 * 109.47450 * 180.02562 * 14 12 11 41 41 H 1.09001 * 109.46743 * 299.99450 * 14 12 11 42 42 H 0.96996 * 120.00266 * 180.02562 * 18 17 15 43 43 H 1.08997 * 110.02999 * 240.71396 * 23 8 7 44 44 H 1.08992 * 110.03035 * 119.28157 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 1 3.7038 0.4730 1.1449 6 6 2.2585 1.3591 2.5215 7 6 3.2851 1.9825 3.4995 8 6 4.0008 3.0609 2.6600 9 1 3.5371 4.0330 2.8275 10 7 5.4247 3.1136 3.0170 11 6 5.6472 4.0033 4.1647 12 6 7.1383 4.0328 4.5056 13 6 7.6092 2.6201 4.8568 14 6 7.9270 4.5484 3.3003 15 6 7.3664 4.9450 5.6833 16 1 6.5289 5.4373 6.1552 17 6 8.6443 5.1512 6.1583 18 7 8.8263 5.7107 7.3345 19 14 10.1170 4.6358 5.1312 20 1 10.4458 5.7122 4.1624 21 1 11.2819 4.3977 6.0209 22 1 9.7940 3.3879 4.3939 23 6 3.8418 2.6479 1.1862 24 1 -0.5401 -0.9352 0.0004 25 1 -0.5400 0.9354 0.0045 26 1 1.8500 -0.9354 -0.0004 27 1 2.6213 1.4025 -0.9314 28 1 1.3586 2.1317 0.0895 29 1 1.3709 1.9867 2.4414 30 1 1.9891 0.3494 2.8315 31 1 2.7754 2.4365 4.3492 32 1 3.9958 1.2286 3.8381 33 1 5.7860 2.1896 3.2006 34 1 5.3121 5.0098 3.9143 35 1 5.0849 3.6362 5.0233 36 1 7.6030 2.0014 3.9593 37 1 8.6206 2.6641 5.2608 38 1 6.9394 2.1882 5.6004 39 1 7.5916 5.5548 3.0501 40 1 8.9894 4.5690 3.5430 41 1 7.7621 3.8882 2.4488 42 1 9.7252 5.8561 7.6685 43 1 4.8213 2.4867 0.7360 44 1 3.3011 3.4197 0.6385 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593641687.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:15 Heat of formation + Delta-G solvation = 10.275048 kcal Electronic energy + Delta-G solvation = -19000.413408 eV Core-core repulsion = 16338.670575 eV Total energy + Delta-G solvation = -2661.742834 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.02488 -36.85842 -34.94176 -32.70943 -31.30038 -29.41042 -27.78723 -26.16399 -25.14946 -24.75035 -23.47448 -20.58105 -19.99440 -19.54965 -18.71154 -16.10347 -15.77392 -15.65450 -15.17220 -14.80809 -14.11493 -13.97249 -13.47516 -13.30308 -13.07600 -12.76115 -12.42203 -12.17855 -12.07787 -11.81930 -11.70025 -11.48972 -11.25397 -11.02587 -10.82260 -10.70112 -10.50994 -10.38518 -10.25218 -10.01748 -9.89721 -9.81743 -9.44878 -8.92822 -8.51385 -8.33437 -7.76421 -6.05652 -4.01017 2.09292 3.35021 3.44200 3.47649 4.46773 4.47549 4.61524 4.70401 4.84902 4.94359 5.07635 5.27767 5.38679 5.46201 5.50454 5.61797 5.63680 5.66937 5.78461 5.85543 5.88586 6.00053 6.03547 6.09086 6.19213 6.32460 6.34726 6.38025 6.41903 6.45229 6.58816 6.59913 6.67333 6.71714 6.88841 6.96439 7.06152 7.40548 7.62067 7.63598 7.87820 8.01318 8.58317 8.99340 9.60837 11.07873 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.052261 B = 0.004079 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.643861 B = 6862.164629 C = 7048.411919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.145 4.145 3 C -0.088 4.088 4 C -0.089 4.089 5 H 0.073 0.927 6 C -0.113 4.113 7 C -0.154 4.154 8 C 0.083 3.917 9 H 0.075 0.925 10 N -0.684 5.684 11 C 0.084 3.916 12 C 0.040 3.960 13 C -0.143 4.143 14 C -0.134 4.134 15 C -0.512 4.512 16 H 0.070 0.930 17 C 0.072 3.928 18 N -0.898 5.898 19 Si 0.889 3.111 20 H -0.287 1.287 21 H -0.309 1.309 22 H -0.248 1.248 23 C -0.111 4.111 24 H 0.093 0.907 25 H 0.094 0.906 26 H 0.105 0.895 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.336 0.664 34 H 0.061 0.939 35 H 0.021 0.979 36 H 0.026 0.974 37 H 0.053 0.947 38 H 0.038 0.962 39 H 0.044 0.956 40 H 0.029 0.971 41 H 0.043 0.957 42 H 0.262 0.738 43 H 0.075 0.925 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.960 -10.389 -13.411 21.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.163 4.163 3 C -0.125 4.125 4 C -0.108 4.108 5 H 0.091 0.909 6 C -0.151 4.151 7 C -0.193 4.193 8 C -0.027 4.027 9 H 0.093 0.907 10 N -0.315 5.315 11 C -0.044 4.044 12 C 0.039 3.961 13 C -0.200 4.200 14 C -0.191 4.191 15 C -0.550 4.550 16 H 0.088 0.912 17 C -0.129 4.129 18 N -0.536 5.536 19 Si 0.722 3.278 20 H -0.215 1.215 21 H -0.238 1.238 22 H -0.174 1.174 23 C -0.149 4.149 24 H 0.111 0.889 25 H 0.113 0.887 26 H 0.123 0.877 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.155 0.845 34 H 0.080 0.920 35 H 0.039 0.961 36 H 0.045 0.955 37 H 0.071 0.929 38 H 0.057 0.943 39 H 0.063 0.937 40 H 0.047 0.953 41 H 0.062 0.938 42 H 0.072 0.928 43 H 0.094 0.906 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.675 -9.814 -13.728 21.105 hybrid contribution 0.489 -0.690 0.396 0.934 sum -12.186 -10.504 -13.332 20.894 Atomic orbital electron populations 1.23801 0.96003 1.01585 1.02563 1.22995 0.95993 0.98673 0.98663 1.20842 0.97969 0.95088 0.98598 1.21979 0.96242 0.98602 0.93933 0.90887 1.22463 0.97678 1.00269 0.94682 1.23136 0.98817 0.98907 0.98458 1.22181 0.88971 0.97780 0.93815 0.90705 1.60761 1.13744 1.15710 1.41297 1.21955 0.97872 0.95405 0.89153 1.18463 0.90602 0.93195 0.93850 1.22287 1.01345 0.98008 0.98376 1.22155 0.98215 1.00306 0.98448 1.20888 0.94223 1.27426 1.12465 0.91160 1.24989 0.98993 0.94648 0.94312 1.69966 1.22118 1.44606 1.16877 0.87245 0.81428 0.79995 0.79155 1.21528 1.23823 1.17407 1.22253 1.00308 0.95824 0.96491 0.88852 0.88749 0.87653 0.91030 0.91503 0.91762 0.92136 0.91904 0.91632 0.84452 0.92019 0.96052 0.95458 0.92864 0.94276 0.93682 0.95250 0.93806 0.92780 0.90614 0.91966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.60 14.32 29.02 0.42 -1.18 16 2 C -0.15 -1.22 9.06 -36.02 -0.33 -1.54 16 3 C -0.09 -0.76 5.02 -27.88 -0.14 -0.90 16 4 C -0.09 -0.88 2.89 -88.96 -0.26 -1.14 16 5 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 6 C -0.11 -1.17 5.87 -24.74 -0.15 -1.32 16 7 C -0.15 -1.90 6.39 -25.08 -0.16 -2.06 16 8 C 0.08 1.13 3.22 -66.59 -0.21 0.92 16 9 H 0.07 1.07 7.83 -51.93 -0.41 0.67 16 10 N -0.68 -11.14 5.38 -105.54 -0.57 -11.71 16 11 C 0.08 1.67 4.40 -3.82 -0.02 1.65 16 12 C 0.04 0.91 0.57 -155.67 -0.09 0.83 16 13 C -0.14 -3.07 7.24 37.16 0.27 -2.80 16 14 C -0.13 -2.98 7.54 37.16 0.28 -2.70 16 15 C -0.51 -14.25 8.62 -34.44 -0.30 -14.55 16 16 H 0.07 2.13 7.99 -52.48 -0.42 1.71 16 17 C 0.07 2.08 5.32 -17.82 -0.09 1.99 16 18 N -0.90 -27.66 13.96 55.43 0.77 -26.89 16 19 Si 0.89 22.30 22.79 -169.99 -3.87 18.42 16 20 H -0.29 -7.21 7.10 56.52 0.40 -6.81 16 21 H -0.31 -7.88 7.11 56.52 0.40 -7.47 16 22 H -0.25 -5.77 4.65 56.52 0.26 -5.51 16 23 C -0.11 -1.28 6.17 -25.61 -0.16 -1.43 16 24 H 0.09 0.64 8.06 -52.49 -0.42 0.22 16 25 H 0.09 0.71 7.84 -52.48 -0.41 0.30 16 26 H 0.11 0.83 8.06 -52.48 -0.42 0.40 16 27 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.58 7.75 -51.93 -0.40 0.18 16 29 H 0.06 0.65 8.02 -51.93 -0.42 0.24 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.06 0.84 7.58 -51.92 -0.39 0.45 16 33 H 0.34 5.36 6.40 -39.29 -0.25 5.11 16 34 H 0.06 1.26 8.07 -51.93 -0.42 0.84 16 35 H 0.02 0.43 8.10 -51.93 -0.42 0.01 16 36 H 0.03 0.51 7.06 -51.92 -0.37 0.14 16 37 H 0.05 1.23 4.30 -51.93 -0.22 1.00 16 38 H 0.04 0.81 8.12 -51.93 -0.42 0.39 16 39 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.03 0.68 2.26 -51.93 -0.12 0.57 16 41 H 0.04 0.88 7.60 -51.93 -0.39 0.48 16 42 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 43 H 0.08 0.94 7.92 -51.93 -0.41 0.53 16 44 H 0.06 0.68 7.84 -51.93 -0.41 0.27 16 LS Contribution 327.42 15.07 4.93 4.93 Total: -1.00 -29.08 327.42 -7.78 -36.86 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -8.12 Total: 2.64 kcal Atomic # 6 Polarization: -23.32 SS G_CDS: -0.93 Total: -24.25 kcal Atomic # 7 Polarization: -38.81 SS G_CDS: 0.21 Total: -38.60 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -3.87 Total: 18.42 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.08 -7.78 -36.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593641687.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.138 kcal (2) G-P(sol) polarization free energy of solvation -29.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds