Wall clock time and date at job start Mon Mar 30 2020 06:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50706 * 120.00351 * 2 1 4 4 C 1.52996 * 109.47147 * 125.00182 * 3 2 1 5 5 H 1.09000 * 110.43832 * 56.08942 * 4 3 2 6 6 C 1.54891 * 110.48854 * 293.54578 * 4 3 2 7 7 C 1.54882 * 102.75138 * 203.38264 * 6 4 3 8 8 C 1.54268 * 104.19603 * 37.93909 * 7 6 4 9 9 H 1.08999 * 110.02743 * 95.67750 * 8 7 6 10 10 N 1.46900 * 110.03322 * 217.10740 * 8 7 6 11 11 C 1.46909 * 110.99985 * 273.54922 * 10 8 7 12 12 C 1.52991 * 109.46979 * 180.02562 * 11 10 8 13 13 C 1.52999 * 109.47229 * 299.99662 * 12 11 10 14 14 C 1.52998 * 109.47497 * 60.00065 * 12 11 10 15 15 C 1.50701 * 109.47103 * 180.02562 * 12 11 10 16 16 H 1.08006 * 119.99923 * 1.23684 * 15 12 11 17 17 C 1.37883 * 120.00344 * 181.24027 * 15 12 11 18 18 N 1.31508 * 120.00121 * 194.11089 * 17 15 12 19 19 Si 1.86802 * 119.99531 * 14.10851 * 17 15 12 20 20 H 1.48504 * 109.46781 * 84.53780 * 19 17 15 21 21 H 1.48498 * 109.46574 * 204.53169 * 19 17 15 22 22 H 1.48494 * 109.47486 * 324.53353 * 19 17 15 23 23 C 1.53875 * 106.60051 * 336.39307 * 8 7 6 24 24 H 1.07995 * 120.00590 * 180.02562 * 1 2 3 25 25 H 1.08008 * 119.99518 * 359.72133 * 1 2 3 26 26 H 1.08007 * 119.99945 * 180.02562 * 2 1 3 27 27 H 1.09002 * 109.46713 * 245.00328 * 3 2 1 28 28 H 1.09004 * 109.46821 * 4.99756 * 3 2 1 29 29 H 1.09002 * 110.75401 * 321.69695 * 6 4 3 30 30 H 1.09003 * 110.75539 * 84.87571 * 6 4 3 31 31 H 1.08992 * 110.48791 * 156.62314 * 7 6 4 32 32 H 1.09008 * 110.48204 * 279.26316 * 7 6 4 33 33 H 1.00900 * 111.00136 * 37.49918 * 10 8 7 34 34 H 1.08998 * 109.46523 * 299.99921 * 11 10 8 35 35 H 1.08999 * 109.46836 * 59.99608 * 11 10 8 36 36 H 1.09007 * 109.47107 * 69.51774 * 13 12 11 37 37 H 1.08998 * 109.47485 * 189.51874 * 13 12 11 38 38 H 1.08999 * 109.47002 * 309.52145 * 13 12 11 39 39 H 1.08993 * 109.47065 * 59.99539 * 14 12 11 40 40 H 1.08997 * 109.47450 * 180.02562 * 14 12 11 41 41 H 1.09001 * 109.46743 * 299.99450 * 14 12 11 42 42 H 0.96996 * 120.00266 * 180.02562 * 18 17 15 43 43 H 1.08997 * 110.02999 * 240.71396 * 23 8 7 44 44 H 1.08992 * 110.03035 * 119.28157 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 1 3.7038 0.4730 1.1449 6 6 2.2585 1.3591 2.5215 7 6 3.2851 1.9825 3.4995 8 6 4.0008 3.0609 2.6600 9 1 3.5371 4.0330 2.8275 10 7 5.4247 3.1136 3.0170 11 6 5.6472 4.0033 4.1647 12 6 7.1383 4.0328 4.5056 13 6 7.6092 2.6201 4.8568 14 6 7.9270 4.5484 3.3003 15 6 7.3664 4.9450 5.6833 16 1 6.5289 5.4373 6.1552 17 6 8.6443 5.1512 6.1583 18 7 8.8263 5.7107 7.3345 19 14 10.1170 4.6358 5.1312 20 1 10.4458 5.7122 4.1624 21 1 11.2819 4.3977 6.0209 22 1 9.7940 3.3879 4.3939 23 6 3.8418 2.6479 1.1862 24 1 -0.5401 -0.9352 0.0004 25 1 -0.5400 0.9354 0.0045 26 1 1.8500 -0.9354 -0.0004 27 1 2.6213 1.4025 -0.9314 28 1 1.3586 2.1317 0.0895 29 1 1.3709 1.9867 2.4414 30 1 1.9891 0.3494 2.8315 31 1 2.7754 2.4365 4.3492 32 1 3.9958 1.2286 3.8381 33 1 5.7860 2.1896 3.2006 34 1 5.3121 5.0098 3.9143 35 1 5.0849 3.6362 5.0233 36 1 7.6030 2.0014 3.9593 37 1 8.6206 2.6641 5.2608 38 1 6.9394 2.1882 5.6004 39 1 7.5916 5.5548 3.0501 40 1 8.9894 4.5690 3.5430 41 1 7.7621 3.8882 2.4488 42 1 9.7252 5.8561 7.6685 43 1 4.8213 2.4867 0.7360 44 1 3.3011 3.4197 0.6385 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593641687.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:15 Heat of formation + Delta-G solvation = -6.742638 kcal Electronic energy + Delta-G solvation = -19001.151350 eV Core-core repulsion = 16338.670575 eV Total energy + Delta-G solvation = -2662.480776 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.08183 -38.39422 -35.95255 -34.27842 -32.99819 -30.28942 -28.87478 -27.91512 -27.07339 -25.98920 -24.82406 -21.51866 -20.75501 -20.55006 -20.39322 -18.06830 -17.36030 -16.66773 -16.57182 -15.77278 -15.26609 -15.07500 -14.94798 -14.74788 -14.40969 -14.22181 -13.90351 -13.71794 -13.66189 -13.21546 -12.89948 -12.52920 -12.33533 -12.18907 -12.10416 -11.91975 -11.85734 -11.69750 -11.64151 -11.57126 -11.29158 -11.23972 -10.92287 -10.56832 -10.29226 -10.07117 -9.12556 -8.29398 -6.28342 1.36921 1.38808 1.49426 1.50426 2.36101 3.07851 3.38387 3.73417 3.79811 3.94851 4.15584 4.28115 4.37020 4.43569 4.54487 4.58332 4.60334 4.67907 4.74086 4.78905 4.82902 4.88034 4.92521 4.98192 4.98509 5.08419 5.09647 5.14198 5.17399 5.21996 5.24633 5.29913 5.34486 5.45913 5.58932 5.61871 5.77527 5.84088 5.88107 5.98340 6.29987 6.36903 6.64915 6.80074 7.37025 8.88048 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.052261 B = 0.004079 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.643861 B = 6862.164629 C = 7048.411919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.155 4.155 3 C -0.084 4.084 4 C -0.081 4.081 5 H 0.075 0.925 6 C -0.106 4.106 7 C -0.152 4.152 8 C 0.079 3.921 9 H 0.063 0.937 10 N -0.678 5.678 11 C 0.099 3.901 12 C 0.035 3.965 13 C -0.139 4.139 14 C -0.131 4.131 15 C -0.515 4.515 16 H 0.027 0.973 17 C 0.015 3.985 18 N -0.950 5.950 19 Si 0.946 3.054 20 H -0.286 1.286 21 H -0.316 1.316 22 H -0.211 1.211 23 C -0.104 4.104 24 H 0.102 0.898 25 H 0.096 0.904 26 H 0.111 0.889 27 H 0.077 0.923 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.342 0.658 34 H 0.048 0.952 35 H 0.008 0.992 36 H 0.062 0.938 37 H 0.038 0.962 38 H 0.038 0.962 39 H 0.037 0.963 40 H 0.022 0.978 41 H 0.072 0.928 42 H 0.263 0.737 43 H 0.071 0.929 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.285 -12.460 -16.012 24.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.173 4.173 3 C -0.121 4.121 4 C -0.099 4.099 5 H 0.094 0.906 6 C -0.144 4.144 7 C -0.192 4.192 8 C -0.031 4.031 9 H 0.082 0.918 10 N -0.309 5.309 11 C -0.030 4.030 12 C 0.034 3.966 13 C -0.197 4.197 14 C -0.187 4.187 15 C -0.553 4.553 16 H 0.045 0.955 17 C -0.181 4.181 18 N -0.590 5.590 19 Si 0.776 3.224 20 H -0.213 1.213 21 H -0.246 1.246 22 H -0.135 1.135 23 C -0.142 4.142 24 H 0.120 0.880 25 H 0.114 0.886 26 H 0.129 0.871 27 H 0.095 0.905 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.161 0.839 34 H 0.066 0.934 35 H 0.027 0.973 36 H 0.081 0.919 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.040 0.960 41 H 0.090 0.910 42 H 0.072 0.928 43 H 0.090 0.910 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.029 -11.906 -16.358 24.065 hybrid contribution 0.449 0.003 1.254 1.332 sum -12.580 -11.903 -15.104 22.980 Atomic orbital electron populations 1.23951 0.96034 1.02188 1.01773 1.23040 0.96200 0.98683 0.99363 1.20791 0.97731 0.95413 0.98168 1.21907 0.96220 0.97658 0.94153 0.90628 1.22417 0.97177 1.00501 0.94258 1.23078 0.99191 0.98434 0.98468 1.22277 0.87330 0.97859 0.95610 0.91814 1.60711 1.15818 1.15415 1.38985 1.21607 0.95681 0.95633 0.90071 1.18468 0.92864 0.92989 0.92293 1.22190 1.00248 0.97297 0.99926 1.22089 0.97248 1.00620 0.98764 1.21250 0.92868 1.27464 1.13707 0.95504 1.25824 1.02145 0.94994 0.95172 1.70112 1.22758 1.47067 1.19033 0.86314 0.77232 0.81246 0.77629 1.21316 1.24582 1.13536 1.22183 1.00537 0.96927 0.94562 0.87968 0.88556 0.87138 0.90499 0.91466 0.91454 0.91390 0.92865 0.91888 0.83855 0.93388 0.97333 0.91946 0.94297 0.94305 0.94409 0.96003 0.90956 0.92835 0.91008 0.91252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.70 14.32 67.79 0.97 -1.73 16 2 C -0.15 -2.18 9.06 25.65 0.23 -1.95 16 3 C -0.08 -1.23 5.02 29.85 0.15 -1.08 16 4 C -0.08 -1.38 2.89 -9.72 -0.03 -1.41 16 5 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 6 C -0.11 -1.94 5.87 31.88 0.19 -1.76 16 7 C -0.15 -3.53 6.39 31.67 0.20 -3.33 16 8 C 0.08 2.03 3.22 45.64 0.15 2.18 16 9 H 0.06 1.77 7.83 -2.39 -0.02 1.76 16 10 N -0.68 -20.67 5.38 -487.83 -2.63 -23.30 16 11 C 0.10 3.88 4.40 86.30 0.38 4.26 16 12 C 0.03 1.56 0.57 -52.93 -0.03 1.53 16 13 C -0.14 -5.65 7.24 71.98 0.52 -5.13 16 14 C -0.13 -5.46 7.54 71.98 0.54 -4.92 16 15 C -0.51 -29.30 8.62 25.60 0.22 -29.08 16 16 H 0.03 1.70 7.99 -2.91 -0.02 1.68 16 17 C 0.02 0.90 5.32 84.66 0.45 1.36 16 18 N -0.95 -60.44 13.96 21.45 0.30 -60.14 16 19 Si 0.95 45.56 22.79 68.60 1.56 47.12 16 20 H -0.29 -13.59 7.10 99.48 0.71 -12.88 16 21 H -0.32 -15.51 7.11 99.48 0.71 -14.80 16 22 H -0.21 -8.93 4.65 99.48 0.46 -8.47 16 23 C -0.10 -2.14 6.17 31.32 0.19 -1.94 16 24 H 0.10 1.16 8.06 -2.91 -0.02 1.14 16 25 H 0.10 1.23 7.84 -2.91 -0.02 1.21 16 26 H 0.11 1.44 8.06 -2.91 -0.02 1.41 16 27 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.07 0.99 7.75 -2.38 -0.02 0.97 16 29 H 0.07 1.21 8.02 -2.39 -0.02 1.19 16 30 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.06 1.50 7.58 -2.38 -0.02 1.48 16 33 H 0.34 9.86 6.40 -89.69 -0.57 9.29 16 34 H 0.05 1.98 8.07 -2.39 -0.02 1.96 16 35 H 0.01 0.35 8.10 -2.39 -0.02 0.33 16 36 H 0.06 2.09 7.06 -2.38 -0.02 2.07 16 37 H 0.04 1.68 4.30 -2.39 -0.01 1.67 16 38 H 0.04 1.54 8.12 -2.39 -0.02 1.52 16 39 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.02 0.95 2.26 -2.39 -0.01 0.94 16 41 H 0.07 2.61 7.60 -2.39 -0.02 2.59 16 42 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 43 H 0.07 1.57 7.92 -2.39 -0.02 1.55 16 44 H 0.07 1.34 7.84 -2.39 -0.02 1.32 16 Total: -1.00 -63.52 327.42 3.50 -60.03 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: 0.12 Total: 19.30 kcal Atomic # 6 Polarization: -47.14 SS G_CDS: 4.14 Total: -43.01 kcal Atomic # 7 Polarization: -81.11 SS G_CDS: -2.33 Total: -83.44 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 1.56 Total: 47.12 kcal Total: -63.52 3.50 -60.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593641687.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.283 kcal (2) G-P(sol) polarization free energy of solvation -63.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds