Wall clock time and date at job start Mon Mar 30 2020 06:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50703 * 120.00105 * 2 1 4 4 C 1.53003 * 109.47182 * 124.99873 * 3 2 1 5 5 H 1.08996 * 110.01797 * 306.39081 * 4 3 2 6 6 C 1.54268 * 110.07253 * 67.81001 * 4 3 2 7 7 C 1.55031 * 104.28050 * 142.82246 * 6 4 3 8 8 C 1.54892 * 102.68248 * 322.23640 * 7 6 4 9 9 H 1.08996 * 110.48529 * 279.02603 * 8 7 6 10 10 N 1.46905 * 110.48514 * 156.51565 * 8 7 6 11 11 C 1.46901 * 110.99870 * 88.24112 * 10 8 7 12 12 C 1.53004 * 109.46916 * 180.02562 * 11 10 8 13 13 C 1.52999 * 109.46923 * 299.99733 * 12 11 10 14 14 C 1.52999 * 109.46998 * 59.99872 * 12 11 10 15 15 C 1.50703 * 109.46807 * 179.97438 * 12 11 10 16 16 H 1.07995 * 120.00107 * 359.97438 * 15 12 11 17 17 C 1.37878 * 119.99714 * 179.97438 * 15 12 11 18 18 N 1.31510 * 119.99944 * 0.02562 * 17 15 12 19 19 Si 1.86799 * 119.99765 * 179.97438 * 17 15 12 20 20 H 1.48494 * 109.47051 * 60.00574 * 19 17 15 21 21 H 1.48501 * 109.46677 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47226 * 299.99990 * 19 17 15 23 23 C 1.53876 * 110.03286 * 185.00091 * 4 3 2 24 24 H 1.08003 * 120.00282 * 0.02562 * 1 2 3 25 25 H 1.07999 * 120.00303 * 179.97438 * 1 2 3 26 26 H 1.08003 * 120.00282 * 179.97438 * 2 1 3 27 27 H 1.09000 * 109.46716 * 5.00123 * 3 2 1 28 28 H 1.09001 * 109.47227 * 245.00093 * 3 2 1 29 29 H 1.08998 * 110.48396 * 261.59758 * 6 4 3 30 30 H 1.09000 * 110.48713 * 24.23843 * 6 4 3 31 31 H 1.08991 * 110.87496 * 203.90008 * 7 6 4 32 32 H 1.08999 * 110.69247 * 80.48481 * 7 6 4 33 33 H 1.00901 * 110.99869 * 324.28824 * 10 8 7 34 34 H 1.09004 * 109.47031 * 299.99620 * 11 10 8 35 35 H 1.08995 * 109.47111 * 59.99900 * 11 10 8 36 36 H 1.09002 * 109.47301 * 60.00027 * 13 12 11 37 37 H 1.09001 * 109.47017 * 180.02562 * 13 12 11 38 38 H 1.09005 * 109.47249 * 300.00302 * 13 12 11 39 39 H 1.09001 * 109.46999 * 60.00126 * 14 12 11 40 40 H 1.09001 * 109.46478 * 179.97438 * 14 12 11 41 41 H 1.08993 * 109.47197 * 299.99817 * 14 12 11 42 42 H 0.97007 * 120.00038 * 179.97438 * 18 17 15 43 43 H 1.08995 * 110.03036 * 121.38232 * 23 4 3 44 44 H 1.09004 * 110.06864 * 359.97438 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1817 5 1 2.5013 1.1234 2.1086 6 6 4.1556 0.2941 0.9705 7 6 5.4253 0.9808 1.5361 8 6 5.2341 2.4564 1.1059 9 1 5.5345 2.5929 0.0671 10 7 6.0007 3.3512 1.9833 11 6 7.3694 3.5343 1.4821 12 6 8.1352 4.4695 2.4202 13 6 7.4277 5.8248 2.4783 14 6 8.1829 3.8584 3.8221 15 6 9.5394 4.6569 1.9063 16 1 9.8543 4.1585 1.0015 17 6 10.4221 5.4646 2.5915 18 7 10.0388 6.0710 3.6936 19 14 12.1630 5.6963 1.9549 20 1 12.1176 6.2882 0.5938 21 1 12.9061 6.6040 2.8654 22 1 12.8492 4.3806 1.9000 23 6 3.7208 2.7079 1.2678 24 1 -0.5401 0.9353 -0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3585 2.1316 0.0896 28 1 2.6213 1.4026 -0.9314 29 1 3.9373 -0.6200 1.5226 30 1 4.2815 0.0791 -0.0907 31 1 6.3259 0.5613 1.0880 32 1 5.4574 0.8961 2.6223 33 1 6.0060 3.0093 2.9326 34 1 7.8736 2.5688 1.4411 35 1 7.3353 3.9692 0.4832 36 1 6.4121 5.6889 2.8502 37 1 7.9735 6.4912 3.1463 38 1 7.3936 6.2601 1.4796 39 1 8.6869 2.8929 3.7806 40 1 8.7288 4.5245 4.4902 41 1 7.1674 3.7226 4.1939 42 1 10.6599 6.6390 4.1759 43 1 3.5198 3.1653 2.2365 44 1 3.3622 3.3555 0.4677 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593641690.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:22 Heat of formation + Delta-G solvation = -9.131972 kcal Electronic energy + Delta-G solvation = -18862.766269 eV Core-core repulsion = 16200.181884 eV Total energy + Delta-G solvation = -2662.584385 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -38.92565 -36.55290 -34.79683 -32.75697 -30.72070 -29.23753 -27.56151 -25.53095 -25.17724 -24.61651 -23.21946 -20.79231 -19.77553 -19.33823 -18.42445 -16.13305 -15.83182 -15.39939 -14.83318 -14.58616 -13.98176 -13.66475 -13.43823 -13.05223 -12.95799 -12.56133 -12.28336 -11.98838 -11.75184 -11.56395 -11.21783 -11.00818 -10.91308 -10.68850 -10.65877 -10.62497 -10.59337 -10.52636 -10.26255 -10.12248 -10.02104 -9.46377 -9.34769 -8.99408 -8.59584 -8.26069 -7.57246 -5.88447 -3.98832 2.11463 3.34166 3.38868 3.41530 4.44395 4.52399 4.71509 4.75743 4.92829 5.04367 5.13403 5.36761 5.38465 5.48304 5.58786 5.61701 5.67506 5.75606 5.87117 5.92654 5.99507 6.06355 6.11488 6.34291 6.38529 6.42578 6.44524 6.48858 6.55777 6.64115 6.76500 6.94044 7.11917 7.20885 7.42347 7.52463 7.78891 7.80857 7.89443 8.06147 8.25332 8.38593 8.59445 9.02670 9.65960 11.11996 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.053294 B = 0.003755 C = 0.003693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.258124 B = 7455.524670 C = 7579.489572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.146 4.146 3 C -0.088 4.088 4 C -0.087 4.087 5 H 0.069 0.931 6 C -0.115 4.115 7 C -0.155 4.155 8 C 0.084 3.916 9 H 0.075 0.925 10 N -0.680 5.680 11 C 0.076 3.924 12 C 0.069 3.931 13 C -0.119 4.119 14 C -0.132 4.132 15 C -0.507 4.507 16 H 0.051 0.949 17 C 0.065 3.935 18 N -0.885 5.885 19 Si 0.888 3.112 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.279 1.279 23 C -0.109 4.109 24 H 0.095 0.905 25 H 0.093 0.907 26 H 0.106 0.894 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.337 0.663 34 H 0.012 0.988 35 H 0.054 0.946 36 H 0.020 0.980 37 H 0.073 0.927 38 H 0.017 0.983 39 H 0.018 0.982 40 H 0.083 0.917 41 H 0.010 0.990 42 H 0.258 0.742 43 H 0.070 0.930 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.376 -10.125 -4.615 18.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.164 4.164 3 C -0.126 4.126 4 C -0.106 4.106 5 H 0.087 0.913 6 C -0.153 4.153 7 C -0.195 4.195 8 C -0.027 4.027 9 H 0.093 0.907 10 N -0.311 5.311 11 C -0.052 4.052 12 C 0.068 3.932 13 C -0.177 4.177 14 C -0.190 4.190 15 C -0.546 4.546 16 H 0.069 0.931 17 C -0.136 4.136 18 N -0.524 5.524 19 Si 0.716 3.284 20 H -0.204 1.204 21 H -0.214 1.214 22 H -0.205 1.205 23 C -0.148 4.148 24 H 0.113 0.887 25 H 0.112 0.888 26 H 0.124 0.876 27 H 0.084 0.916 28 H 0.091 0.909 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.157 0.843 34 H 0.030 0.970 35 H 0.072 0.928 36 H 0.039 0.961 37 H 0.092 0.908 38 H 0.036 0.964 39 H 0.037 0.963 40 H 0.101 0.899 41 H 0.029 0.971 42 H 0.068 0.932 43 H 0.089 0.911 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -14.523 -9.391 -4.762 17.938 hybrid contribution 1.415 -0.861 -0.167 1.665 sum -13.108 -10.253 -4.929 17.356 Atomic orbital electron populations 1.23820 0.96028 1.01597 1.02667 1.23041 0.95923 0.98870 0.98565 1.20934 0.97941 0.94884 0.98801 1.21739 0.95393 0.95768 0.97734 0.91251 1.22377 0.94678 0.97513 1.00698 1.23262 0.97565 0.97889 1.00741 1.22407 0.93591 0.89156 0.97536 0.90694 1.60645 1.15873 1.49378 1.05200 1.22148 0.85993 0.97828 0.99267 1.18083 0.92827 0.91351 0.90913 1.21639 0.96997 0.99572 0.99470 1.21830 0.96973 0.99413 1.00747 1.21092 0.96059 1.28080 1.09355 0.93108 1.24883 0.98141 0.95601 0.94942 1.69826 1.34916 1.31099 1.16562 0.86728 0.85012 0.77894 0.78721 1.20410 1.21368 1.20501 1.22210 0.94648 0.95420 1.02495 0.88716 0.88850 0.87565 0.91569 0.90894 0.92263 0.91750 0.91886 0.91574 0.84277 0.96974 0.92774 0.96111 0.90794 0.96369 0.96283 0.89875 0.97076 0.93163 0.91127 0.91828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.69 14.32 29.02 0.42 -1.27 16 2 C -0.15 -1.30 9.16 -36.02 -0.33 -1.63 16 3 C -0.09 -0.84 4.79 -27.88 -0.13 -0.97 16 4 C -0.09 -0.93 2.92 -89.50 -0.26 -1.19 16 5 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 6 C -0.11 -1.23 5.81 -24.99 -0.15 -1.38 16 7 C -0.16 -2.03 6.47 -24.66 -0.16 -2.19 16 8 C 0.08 1.23 3.16 -66.05 -0.21 1.02 16 9 H 0.07 1.15 7.85 -51.93 -0.41 0.74 16 10 N -0.68 -12.18 5.49 -104.97 -0.58 -12.75 16 11 C 0.08 1.60 4.44 -3.82 -0.02 1.59 16 12 C 0.07 1.68 0.57 -155.66 -0.09 1.59 16 13 C -0.12 -2.94 8.09 37.16 0.30 -2.64 16 14 C -0.13 -3.14 7.92 37.16 0.29 -2.85 16 15 C -0.51 -13.81 8.01 -34.44 -0.28 -14.08 16 16 H 0.05 1.38 7.74 -52.49 -0.41 0.97 16 17 C 0.07 1.78 5.15 -17.82 -0.09 1.69 16 18 N -0.89 -24.74 9.35 55.43 0.52 -24.22 16 19 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 C -0.11 -1.38 6.19 -25.61 -0.16 -1.54 16 24 H 0.09 0.74 7.84 -52.48 -0.41 0.33 16 25 H 0.09 0.67 8.06 -52.49 -0.42 0.24 16 26 H 0.11 0.89 7.88 -52.48 -0.41 0.48 16 27 H 0.07 0.61 7.79 -51.93 -0.40 0.21 16 28 H 0.07 0.69 8.01 -51.93 -0.42 0.28 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.66 7.76 -51.93 -0.40 0.26 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.07 0.89 7.81 -51.93 -0.41 0.48 16 33 H 0.34 6.03 6.30 -39.29 -0.25 5.78 16 34 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 35 H 0.05 1.17 8.08 -51.93 -0.42 0.76 16 36 H 0.02 0.47 7.60 -51.93 -0.39 0.07 16 37 H 0.07 2.00 6.07 -51.93 -0.32 1.68 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.08 2.20 6.07 -51.93 -0.32 1.88 16 41 H 0.01 0.22 6.57 -51.93 -0.34 -0.12 16 42 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 43 H 0.07 0.95 8.04 -51.93 -0.42 0.53 16 44 H 0.06 0.79 7.67 -51.93 -0.40 0.39 16 LS Contribution 337.01 15.07 5.08 5.08 Total: -1.00 -27.00 337.01 -9.07 -36.07 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -8.21 Total: 3.40 kcal Atomic # 6 Polarization: -22.98 SS G_CDS: -0.86 Total: -23.84 kcal Atomic # 7 Polarization: -36.91 SS G_CDS: -0.06 Total: -36.97 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -27.00 -9.07 -36.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593641690.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.937 kcal (2) G-P(sol) polarization free energy of solvation -26.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds