Wall clock time and date at job start Mon Mar 30 2020 06:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50703 * 120.00105 * 2 1 4 4 C 1.53003 * 109.47182 * 124.99873 * 3 2 1 5 5 H 1.08996 * 110.01797 * 306.39081 * 4 3 2 6 6 C 1.54268 * 110.07253 * 67.81001 * 4 3 2 7 7 C 1.55031 * 104.28050 * 142.82246 * 6 4 3 8 8 C 1.54892 * 102.68248 * 322.23640 * 7 6 4 9 9 H 1.08996 * 110.48529 * 279.02603 * 8 7 6 10 10 N 1.46905 * 110.48514 * 156.51565 * 8 7 6 11 11 C 1.46901 * 110.99870 * 88.24112 * 10 8 7 12 12 C 1.53004 * 109.46916 * 180.02562 * 11 10 8 13 13 C 1.52999 * 109.46923 * 299.99733 * 12 11 10 14 14 C 1.52999 * 109.46998 * 59.99872 * 12 11 10 15 15 C 1.50703 * 109.46807 * 179.97438 * 12 11 10 16 16 H 1.07995 * 120.00107 * 359.97438 * 15 12 11 17 17 C 1.37878 * 119.99714 * 179.97438 * 15 12 11 18 18 N 1.31510 * 119.99944 * 0.02562 * 17 15 12 19 19 Si 1.86799 * 119.99765 * 179.97438 * 17 15 12 20 20 H 1.48494 * 109.47051 * 60.00574 * 19 17 15 21 21 H 1.48501 * 109.46677 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47226 * 299.99990 * 19 17 15 23 23 C 1.53876 * 110.03286 * 185.00091 * 4 3 2 24 24 H 1.08003 * 120.00282 * 0.02562 * 1 2 3 25 25 H 1.07999 * 120.00303 * 179.97438 * 1 2 3 26 26 H 1.08003 * 120.00282 * 179.97438 * 2 1 3 27 27 H 1.09000 * 109.46716 * 5.00123 * 3 2 1 28 28 H 1.09001 * 109.47227 * 245.00093 * 3 2 1 29 29 H 1.08998 * 110.48396 * 261.59758 * 6 4 3 30 30 H 1.09000 * 110.48713 * 24.23843 * 6 4 3 31 31 H 1.08991 * 110.87496 * 203.90008 * 7 6 4 32 32 H 1.08999 * 110.69247 * 80.48481 * 7 6 4 33 33 H 1.00901 * 110.99869 * 324.28824 * 10 8 7 34 34 H 1.09004 * 109.47031 * 299.99620 * 11 10 8 35 35 H 1.08995 * 109.47111 * 59.99900 * 11 10 8 36 36 H 1.09002 * 109.47301 * 60.00027 * 13 12 11 37 37 H 1.09001 * 109.47017 * 180.02562 * 13 12 11 38 38 H 1.09005 * 109.47249 * 300.00302 * 13 12 11 39 39 H 1.09001 * 109.46999 * 60.00126 * 14 12 11 40 40 H 1.09001 * 109.46478 * 179.97438 * 14 12 11 41 41 H 1.08993 * 109.47197 * 299.99817 * 14 12 11 42 42 H 0.97007 * 120.00038 * 179.97438 * 18 17 15 43 43 H 1.08995 * 110.03036 * 121.38232 * 23 4 3 44 44 H 1.09004 * 110.06864 * 359.97438 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1817 5 1 2.5013 1.1234 2.1086 6 6 4.1556 0.2941 0.9705 7 6 5.4253 0.9808 1.5361 8 6 5.2341 2.4564 1.1059 9 1 5.5345 2.5929 0.0671 10 7 6.0007 3.3512 1.9833 11 6 7.3694 3.5343 1.4821 12 6 8.1352 4.4695 2.4202 13 6 7.4277 5.8248 2.4783 14 6 8.1829 3.8584 3.8221 15 6 9.5394 4.6569 1.9063 16 1 9.8543 4.1585 1.0015 17 6 10.4221 5.4646 2.5915 18 7 10.0388 6.0710 3.6936 19 14 12.1630 5.6963 1.9549 20 1 12.1176 6.2882 0.5938 21 1 12.9061 6.6040 2.8654 22 1 12.8492 4.3806 1.9000 23 6 3.7208 2.7079 1.2678 24 1 -0.5401 0.9353 -0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3585 2.1316 0.0896 28 1 2.6213 1.4026 -0.9314 29 1 3.9373 -0.6200 1.5226 30 1 4.2815 0.0791 -0.0907 31 1 6.3259 0.5613 1.0880 32 1 5.4574 0.8961 2.6223 33 1 6.0060 3.0093 2.9326 34 1 7.8736 2.5688 1.4411 35 1 7.3353 3.9692 0.4832 36 1 6.4121 5.6889 2.8502 37 1 7.9735 6.4912 3.1463 38 1 7.3936 6.2601 1.4796 39 1 8.6869 2.8929 3.7806 40 1 8.7288 4.5245 4.4902 41 1 7.1674 3.7226 4.1939 42 1 10.6599 6.6390 4.1759 43 1 3.5198 3.1653 2.2365 44 1 3.3622 3.3555 0.4677 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593641690.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:22 Heat of formation + Delta-G solvation = -21.800477 kcal Electronic energy + Delta-G solvation = -18863.315617 eV Core-core repulsion = 16200.181884 eV Total energy + Delta-G solvation = -2663.133733 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.01685 -38.16954 -35.90806 -34.22612 -32.42043 -30.19497 -28.72581 -27.50226 -27.23747 -25.77252 -24.66637 -21.76745 -20.70425 -20.30049 -20.18145 -17.89918 -17.01618 -16.80735 -16.29406 -15.89897 -15.28782 -15.00957 -14.56737 -14.41498 -14.15448 -13.88325 -13.85171 -13.26709 -13.13924 -12.93298 -12.86694 -12.64629 -12.44406 -12.37200 -12.16475 -12.03774 -11.98914 -11.61700 -11.49950 -11.45375 -11.29821 -11.27814 -10.82566 -10.59889 -10.33829 -10.12106 -9.03331 -7.96324 -6.13474 1.43303 1.43781 1.47619 1.50858 2.46546 3.25427 3.39219 3.77220 3.79334 4.04092 4.14511 4.32580 4.44509 4.54666 4.57552 4.64662 4.69042 4.72814 4.77340 4.83084 4.89397 5.01753 5.03062 5.08371 5.13536 5.17421 5.20461 5.22950 5.29730 5.31461 5.42899 5.44589 5.55588 5.58551 5.70040 5.77755 5.82831 5.97582 6.20996 6.31497 6.38445 6.51699 6.70435 6.96455 7.54057 9.01633 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.053294 B = 0.003755 C = 0.003693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.258124 B = 7455.524670 C = 7579.489572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.157 4.157 3 C -0.085 4.085 4 C -0.079 4.079 5 H 0.072 0.928 6 C -0.107 4.107 7 C -0.153 4.153 8 C 0.079 3.921 9 H 0.068 0.932 10 N -0.682 5.682 11 C 0.092 3.908 12 C 0.060 3.940 13 C -0.106 4.106 14 C -0.120 4.120 15 C -0.529 4.529 16 H 0.044 0.956 17 C 0.022 3.978 18 N -0.904 5.904 19 Si 0.944 3.056 20 H -0.276 1.276 21 H -0.285 1.285 22 H -0.275 1.275 23 C -0.104 4.104 24 H 0.097 0.903 25 H 0.104 0.896 26 H 0.112 0.888 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.338 0.662 34 H 0.007 0.993 35 H 0.044 0.956 36 H 0.034 0.966 37 H 0.048 0.952 38 H 0.009 0.991 39 H 0.016 0.984 40 H 0.055 0.945 41 H 0.033 0.967 42 H 0.258 0.742 43 H 0.062 0.938 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.460 -11.269 -5.109 19.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.175 4.175 3 C -0.122 4.122 4 C -0.098 4.098 5 H 0.091 0.909 6 C -0.145 4.145 7 C -0.192 4.192 8 C -0.031 4.031 9 H 0.086 0.914 10 N -0.313 5.313 11 C -0.037 4.037 12 C 0.059 3.941 13 C -0.164 4.164 14 C -0.178 4.178 15 C -0.568 4.568 16 H 0.062 0.938 17 C -0.177 4.177 18 N -0.543 5.543 19 Si 0.771 3.229 20 H -0.201 1.201 21 H -0.210 1.210 22 H -0.201 1.201 23 C -0.142 4.142 24 H 0.115 0.885 25 H 0.123 0.877 26 H 0.130 0.870 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.158 0.842 34 H 0.025 0.975 35 H 0.062 0.938 36 H 0.053 0.947 37 H 0.067 0.933 38 H 0.028 0.972 39 H 0.035 0.965 40 H 0.074 0.926 41 H 0.052 0.948 42 H 0.067 0.933 43 H 0.081 0.919 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.620 -10.545 -5.262 19.567 hybrid contribution 1.704 -0.500 -0.017 1.776 sum -13.916 -11.045 -5.279 18.534 Atomic orbital electron populations 1.23992 0.95985 1.02338 1.01528 1.23058 0.96191 0.98697 0.99571 1.20879 0.97725 0.95489 0.98113 1.21656 0.95410 0.94213 0.98515 0.90937 1.22342 0.93204 0.97780 1.01143 1.23193 0.98570 0.96817 1.00606 1.22504 0.94379 0.89743 0.96461 0.91417 1.60590 1.14040 1.51005 1.05686 1.21790 0.87409 0.96576 0.97895 1.18135 0.92162 0.91935 0.91829 1.21474 0.97377 0.99249 0.98252 1.21658 0.97866 0.98389 0.99898 1.21432 0.97754 1.28277 1.09314 0.93811 1.25539 1.01461 0.95478 0.95199 1.69960 1.35807 1.31285 1.17214 0.85836 0.81040 0.77854 0.78184 1.20140 1.21020 1.20086 1.22154 0.93130 0.96826 1.02129 0.88458 0.87734 0.86998 0.91407 0.90978 0.90936 0.91097 0.92647 0.91819 0.84189 0.97483 0.93759 0.94700 0.93291 0.97219 0.96518 0.92572 0.94794 0.93299 0.91872 0.91628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.85 14.32 67.79 0.97 -1.88 16 2 C -0.16 -2.41 9.16 25.65 0.23 -2.18 16 3 C -0.08 -1.42 4.79 29.85 0.14 -1.28 16 4 C -0.08 -1.50 2.92 -10.07 -0.03 -1.53 16 5 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 6 C -0.11 -2.05 5.81 31.72 0.18 -1.86 16 7 C -0.15 -3.76 6.47 31.94 0.21 -3.56 16 8 C 0.08 2.24 3.16 45.99 0.15 2.39 16 9 H 0.07 2.02 7.85 -2.39 -0.02 2.00 16 10 N -0.68 -23.85 5.49 -486.02 -2.67 -26.52 16 11 C 0.09 3.88 4.44 86.30 0.38 4.26 16 12 C 0.06 2.93 0.57 -52.93 -0.03 2.90 16 13 C -0.11 -5.25 8.09 71.98 0.58 -4.66 16 14 C -0.12 -5.72 7.92 71.98 0.57 -5.15 16 15 C -0.53 -29.01 8.01 25.60 0.21 -28.80 16 16 H 0.04 2.40 7.74 -2.91 -0.02 2.37 16 17 C 0.02 1.22 5.15 84.66 0.44 1.66 16 18 N -0.90 -50.98 9.35 21.45 0.20 -50.78 16 19 Si 0.94 43.73 29.54 68.60 2.03 45.75 16 20 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 21 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 22 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 23 C -0.10 -2.47 6.19 31.32 0.19 -2.28 16 24 H 0.10 1.31 7.84 -2.91 -0.02 1.28 16 25 H 0.10 1.23 8.06 -2.91 -0.02 1.20 16 26 H 0.11 1.58 7.88 -2.91 -0.02 1.56 16 27 H 0.07 1.11 7.79 -2.39 -0.02 1.09 16 28 H 0.07 1.22 8.01 -2.39 -0.02 1.20 16 29 H 0.07 1.23 8.14 -2.39 -0.02 1.22 16 30 H 0.07 1.29 7.76 -2.39 -0.02 1.27 16 31 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.06 1.61 7.81 -2.39 -0.02 1.59 16 33 H 0.34 11.69 6.30 -89.69 -0.57 11.12 16 34 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 35 H 0.04 1.92 8.08 -2.39 -0.02 1.90 16 36 H 0.03 1.58 7.60 -2.39 -0.02 1.56 16 37 H 0.05 2.67 6.07 -2.39 -0.01 2.65 16 38 H 0.01 0.44 8.14 -2.38 -0.02 0.42 16 39 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.06 2.98 6.07 -2.39 -0.01 2.97 16 41 H 0.03 1.41 6.57 -2.39 -0.02 1.39 16 42 H 0.26 14.00 8.31 -92.70 -0.77 13.23 16 43 H 0.06 1.60 8.04 -2.39 -0.02 1.58 16 44 H 0.06 1.52 7.67 -2.38 -0.02 1.51 16 Total: -1.00 -56.64 337.01 4.12 -52.53 By element: Atomic # 1 Polarization: 20.62 SS G_CDS: 0.36 Total: 20.99 kcal Atomic # 6 Polarization: -46.16 SS G_CDS: 4.20 Total: -41.96 kcal Atomic # 7 Polarization: -74.84 SS G_CDS: -2.47 Total: -77.30 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Total: -56.64 4.12 -52.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593641690.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.726 kcal (2) G-P(sol) polarization free energy of solvation -56.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds