Wall clock time and date at job start Mon Mar 30 2020 06:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46798 * 2 1 4 4 H 1.08998 * 109.46789 * 55.00361 * 3 2 1 5 5 C 1.53000 * 109.47353 * 294.99704 * 3 2 1 6 6 C 1.52999 * 109.46885 * 180.02562 * 5 3 2 7 7 C 1.52997 * 109.47352 * 60.00288 * 6 5 3 8 8 C 1.53000 * 109.46890 * 299.99708 * 7 6 5 9 9 H 1.08998 * 109.47137 * 179.97438 * 8 7 6 10 10 C 1.52995 * 109.47252 * 299.99776 * 8 7 6 11 11 N 1.46902 * 109.47377 * 185.13554 * 10 8 7 12 12 C 1.47476 * 111.00057 * 79.23695 * 11 10 8 13 13 C 1.53508 * 87.93106 * 138.70854 * 12 11 10 14 14 C 1.50703 * 114.16949 * 220.33201 * 13 12 11 15 15 H 1.07992 * 120.00474 * 93.83852 * 14 13 12 16 16 C 1.37878 * 119.99965 * 273.84121 * 14 13 12 17 17 N 1.31519 * 119.99763 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00406 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46835 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47326 * 119.99673 * 18 16 14 21 21 H 1.48505 * 109.47100 * 240.00006 * 18 16 14 22 22 C 1.47474 * 111.00431 * 175.21274 * 11 10 8 23 23 C 1.52998 * 109.46599 * 174.99766 * 3 2 1 24 24 H 1.09002 * 109.47132 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47469 * 299.99894 * 1 2 3 26 26 H 1.08997 * 109.46916 * 60.00042 * 1 2 3 27 27 H 1.08994 * 109.46900 * 240.00095 * 2 1 3 28 28 H 1.08997 * 109.46916 * 119.99958 * 2 1 3 29 29 H 1.08998 * 109.47235 * 300.00332 * 5 3 2 30 30 H 1.08997 * 109.46678 * 60.00304 * 5 3 2 31 31 H 1.08997 * 109.46656 * 180.02562 * 6 5 3 32 32 H 1.08998 * 109.47256 * 300.00075 * 6 5 3 33 33 H 1.09002 * 109.47259 * 179.97438 * 7 6 5 34 34 H 1.08998 * 109.47114 * 59.99699 * 7 6 5 35 35 H 1.09003 * 109.47566 * 305.13614 * 10 8 7 36 36 H 1.09001 * 109.46932 * 65.13924 * 10 8 7 37 37 H 1.09006 * 113.47814 * 253.47530 * 12 11 10 38 38 H 1.08998 * 113.47787 * 23.93856 * 12 11 10 39 39 H 1.09003 * 114.17567 * 87.62389 * 13 12 11 40 40 H 0.97008 * 119.99733 * 180.02562 * 17 16 14 41 41 H 1.09000 * 113.47449 * 336.06347 * 22 11 10 42 42 H 1.09003 * 113.48112 * 106.52609 * 22 11 10 43 43 H 1.08997 * 109.47735 * 300.00058 * 23 3 2 44 44 H 1.08998 * 109.47107 * 60.00208 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 1.6353 2.1266 -1.3074 6 6 2.1458 3.5689 -1.3075 7 6 3.6706 3.5702 -1.1821 8 6 4.0753 2.8862 0.1253 9 1 5.1616 2.8867 0.2145 10 6 3.4657 3.6431 1.3069 11 7 3.9530 3.0616 2.5649 12 6 5.3135 3.5384 2.8756 13 6 4.8730 3.6696 4.3402 14 6 5.3940 4.9022 5.0332 15 1 4.7932 5.7991 5.0639 16 6 6.6377 4.8850 5.6281 17 7 7.3691 3.7925 5.5913 18 14 7.2838 6.4130 6.4865 19 1 6.2766 7.4997 6.3874 20 1 7.5421 6.1058 7.9162 21 1 8.5467 6.8485 5.8378 22 6 3.4765 3.8371 3.7252 23 6 3.5648 1.4443 0.1258 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 2.0699 1.5876 -2.1492 30 1 0.5490 2.1253 -1.3969 31 1 1.8570 4.0563 -2.2387 32 1 1.7115 4.1081 -0.4657 33 1 4.0343 4.5978 -1.1826 34 1 4.1049 3.0310 -2.0239 35 1 3.7563 4.6924 1.2552 36 1 2.3793 3.5646 1.2672 37 1 6.0843 2.7836 2.7198 38 1 5.5565 4.4926 2.4081 39 1 4.9961 2.7590 4.9266 40 1 8.2440 3.7803 6.0102 41 1 3.2292 4.8711 3.4845 42 1 2.6904 3.3356 4.2897 43 1 3.8532 0.9570 1.0571 44 1 3.9994 0.9053 -0.7160 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597203553.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:16 Heat of formation + Delta-G solvation = -5.155713 kcal Electronic energy + Delta-G solvation = -19359.964498 eV Core-core repulsion = 16697.552537 eV Total energy + Delta-G solvation = -2662.411962 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.73636 -38.14364 -34.20334 -32.64180 -31.25050 -29.14536 -28.30903 -25.43374 -24.71477 -23.59097 -22.64863 -21.76429 -20.42124 -18.56159 -18.28295 -16.54880 -15.56702 -15.07094 -14.66440 -14.48972 -14.37215 -14.02141 -13.53350 -13.48791 -13.10385 -12.84042 -12.45055 -12.01266 -11.86915 -11.57891 -11.41030 -11.33554 -11.29864 -11.05770 -10.91248 -10.88101 -10.69096 -10.57164 -10.33667 -9.91755 -9.76756 -9.63027 -9.51822 -9.09713 -8.87087 -8.41345 -7.88708 -6.03425 -4.07447 3.28578 3.36860 3.40493 4.41640 4.71790 4.80964 4.86042 5.06156 5.14950 5.26108 5.26936 5.34269 5.42833 5.49285 5.59620 5.71393 5.73985 5.75730 5.81716 5.92608 6.00912 6.03326 6.04898 6.12556 6.16724 6.20668 6.24469 6.28043 6.32874 6.44802 6.49942 6.58262 6.60803 6.68689 6.73766 6.76386 6.89196 7.19716 7.28149 7.75948 7.95012 8.17786 8.41196 8.95905 9.57326 11.06222 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.035714 B = 0.004594 C = 0.004386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.808919 B = 6093.783420 C = 6382.973204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.087 4.087 4 H 0.075 0.925 5 C -0.113 4.113 6 C -0.120 4.120 7 C -0.113 4.113 8 C -0.080 4.080 9 H 0.068 0.932 10 C 0.026 3.974 11 N -0.480 5.480 12 C 0.007 3.993 13 C 0.040 3.960 14 C -0.515 4.515 15 H 0.057 0.943 16 C 0.066 3.934 17 N -0.886 5.886 18 Si 0.889 3.111 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.284 1.284 22 C -0.006 4.006 23 C -0.098 4.098 24 H 0.048 0.952 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.030 0.970 36 H 0.067 0.933 37 H 0.061 0.939 38 H 0.050 0.950 39 H 0.063 0.937 40 H 0.260 0.740 41 H 0.051 0.949 42 H 0.059 0.941 43 H 0.075 0.925 44 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.205 -3.980 -13.393 17.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.105 4.105 4 H 0.093 0.907 5 C -0.150 4.150 6 C -0.158 4.158 7 C -0.151 4.151 8 C -0.099 4.099 9 H 0.086 0.914 10 C -0.103 4.103 11 N -0.203 5.203 12 C -0.122 4.122 13 C 0.021 3.979 14 C -0.553 4.553 15 H 0.075 0.925 16 C -0.136 4.136 17 N -0.524 5.524 18 Si 0.717 3.283 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.210 1.210 22 C -0.135 4.135 23 C -0.135 4.135 24 H 0.067 0.933 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.049 0.951 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.081 0.919 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.077 0.923 43 H 0.094 0.906 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -10.194 -4.774 -13.432 17.525 hybrid contribution 0.626 1.776 0.319 1.910 sum -9.568 -2.998 -13.113 16.507 Atomic orbital electron populations 1.21817 0.96397 1.01052 1.01702 1.21552 0.95405 0.96949 1.01712 1.21195 0.96335 0.95272 0.97715 0.90700 1.21622 0.99957 0.95663 0.97770 1.21549 0.96120 0.96877 1.01217 1.21557 0.95711 1.00292 0.97573 1.21008 1.00071 0.95326 0.93457 0.91385 1.22718 0.99689 0.95927 0.91986 1.68829 1.06528 1.44565 1.00336 1.23990 0.90360 0.97197 1.00695 1.20097 0.88503 0.97975 0.91278 1.21088 1.01683 0.97467 1.35070 0.92491 1.25013 0.96972 0.95949 0.95674 1.69986 1.11312 1.26899 1.44209 0.86582 0.78859 0.83411 0.79424 1.19753 1.20910 1.21019 1.23963 1.00850 0.95371 0.93273 1.21438 0.94292 0.96018 1.01783 0.93275 0.92790 0.92834 0.92565 0.91880 0.92519 0.92391 0.92707 0.91870 0.92425 0.92319 0.95125 0.91435 0.92093 0.93195 0.91925 0.92976 0.93116 0.92280 0.90627 0.93267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.67 37.16 0.36 -1.13 16 2 C -0.12 -1.31 5.40 -26.73 -0.14 -1.45 16 3 C -0.09 -1.06 1.91 -90.62 -0.17 -1.23 16 4 H 0.07 1.04 6.32 -51.93 -0.33 0.71 16 5 C -0.11 -1.21 4.96 -26.73 -0.13 -1.35 16 6 C -0.12 -1.35 5.65 -26.73 -0.15 -1.50 16 7 C -0.11 -1.40 5.45 -26.73 -0.15 -1.55 16 8 C -0.08 -1.18 2.75 -90.64 -0.25 -1.43 16 9 H 0.07 1.11 7.76 -51.93 -0.40 0.71 16 10 C 0.03 0.43 3.43 -3.83 -0.01 0.42 16 11 N -0.48 -9.66 5.84 -244.66 -1.43 -11.09 16 12 C 0.01 0.15 6.76 -7.55 -0.05 0.10 16 13 C 0.04 1.03 3.77 -91.24 -0.34 0.68 16 14 C -0.51 -14.16 8.82 -34.44 -0.30 -14.46 16 15 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 16 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 17 N -0.89 -25.76 13.26 55.43 0.74 -25.02 16 18 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 19 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 C -0.01 -0.12 7.28 -7.55 -0.06 -0.18 16 23 C -0.10 -1.35 4.62 -26.75 -0.12 -1.48 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.05 0.48 6.56 -51.93 -0.34 0.14 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.58 6.56 -51.93 -0.34 0.24 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.75 6.55 -51.93 -0.34 0.41 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.03 0.55 7.56 -51.93 -0.39 0.15 16 36 H 0.07 1.08 4.83 -51.93 -0.25 0.82 16 37 H 0.06 1.47 8.14 -51.93 -0.42 1.04 16 38 H 0.05 1.18 7.57 -51.93 -0.39 0.78 16 39 H 0.06 1.74 8.11 -51.93 -0.42 1.32 16 40 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 41 H 0.05 1.08 7.81 -51.93 -0.41 0.67 16 42 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.08 1.21 7.76 -51.93 -0.40 0.81 16 44 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 328.97 15.07 4.96 4.96 Total: -1.00 -27.57 328.97 -10.60 -38.17 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -8.21 Total: -0.39 kcal Atomic # 6 Polarization: -21.17 SS G_CDS: -1.62 Total: -22.79 kcal Atomic # 7 Polarization: -35.41 SS G_CDS: -0.69 Total: -36.11 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -27.57 -10.60 -38.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597203553.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.013 kcal (2) G-P(sol) polarization free energy of solvation -27.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds