Wall clock time and date at job start Mon Mar 30 2020 06:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47515 * 2 1 4 4 H 1.09001 * 109.46843 * 54.99918 * 3 2 1 5 5 C 1.53003 * 109.46897 * 295.00259 * 3 2 1 6 6 C 1.53002 * 109.46897 * 179.97438 * 5 3 2 7 7 C 1.52996 * 109.47201 * 59.99589 * 6 5 3 8 8 C 1.52999 * 109.47179 * 300.00021 * 7 6 5 9 9 H 1.08997 * 109.46828 * 299.99992 * 8 7 6 10 10 C 1.53006 * 109.46811 * 180.02562 * 8 7 6 11 11 N 1.46898 * 109.47006 * 64.99980 * 10 8 7 12 12 C 1.47482 * 110.99981 * 74.02733 * 11 10 8 13 13 C 1.53514 * 87.93215 * 138.69915 * 12 11 10 14 14 C 1.50695 * 114.17253 * 220.32576 * 13 12 11 15 15 H 1.08006 * 119.99998 * 93.84370 * 14 13 12 16 16 C 1.37875 * 120.00494 * 273.84600 * 14 13 12 17 17 N 1.31519 * 119.99625 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00489 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.46936 * 59.99442 * 18 16 14 20 20 H 1.48500 * 109.47451 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.46909 * 299.99821 * 18 16 14 22 22 C 1.47486 * 110.99742 * 169.99744 * 11 10 8 23 23 C 1.52996 * 109.47201 * 174.99848 * 3 2 1 24 24 H 1.09003 * 109.47228 * 300.00042 * 1 2 3 25 25 H 1.09001 * 109.47299 * 59.99914 * 1 2 3 26 26 H 1.09001 * 109.47588 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47267 * 239.99463 * 2 1 3 28 28 H 1.09001 * 109.47299 * 120.00086 * 2 1 3 29 29 H 1.08997 * 109.46651 * 299.99693 * 5 3 2 30 30 H 1.09002 * 109.47262 * 59.99682 * 5 3 2 31 31 H 1.08998 * 109.46646 * 179.97438 * 6 5 3 32 32 H 1.09001 * 109.46843 * 299.99659 * 6 5 3 33 33 H 1.09009 * 109.47102 * 179.97438 * 7 6 5 34 34 H 1.09001 * 109.47165 * 60.00267 * 7 6 5 35 35 H 1.09001 * 109.47002 * 184.99763 * 10 8 7 36 36 H 1.08993 * 109.46955 * 305.00200 * 10 8 7 37 37 H 1.09000 * 113.47853 * 253.46569 * 12 11 10 38 38 H 1.09003 * 113.47974 * 23.93820 * 12 11 10 39 39 H 1.09003 * 114.33764 * 87.63837 * 13 12 11 40 40 H 0.97007 * 119.99474 * 180.02562 * 17 16 14 41 41 H 1.08997 * 113.47765 * 336.06025 * 22 11 10 42 42 H 1.09000 * 113.47587 * 106.53508 * 22 11 10 43 43 H 1.09001 * 109.47165 * 60.00267 * 23 3 2 44 44 H 1.08995 * 109.47118 * 299.99762 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 1.6353 2.1265 -1.3074 6 6 2.1448 3.5692 -1.3071 7 6 3.6696 3.5715 -1.1810 8 6 4.0743 2.8875 0.1263 9 1 3.6393 3.4263 0.9680 10 6 5.5991 2.8904 0.2526 11 7 6.0778 4.2739 0.3735 12 6 5.7842 4.8197 1.7118 13 6 7.1795 5.4598 1.6958 14 6 7.9062 5.3886 3.0140 15 1 8.5881 4.5746 3.2114 16 6 7.7007 6.3624 3.9681 17 7 6.8707 7.3539 3.7275 18 14 8.6021 6.2746 5.6019 19 1 10.0670 6.3113 5.3615 20 1 8.2103 7.4316 6.4463 21 1 8.2459 5.0112 6.2963 22 6 7.5074 4.3090 0.7342 23 6 3.5649 1.4442 0.1258 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 2.0699 1.5874 -2.1491 30 1 0.5489 2.1252 -1.3969 31 1 1.8568 4.0563 -2.2387 32 1 1.7098 4.1080 -0.4653 33 1 4.0327 4.5994 -1.1813 34 1 4.1046 3.0328 -2.0228 35 1 5.8914 2.3261 1.1382 36 1 6.0379 2.4302 -0.6327 37 1 4.9727 5.5474 1.7156 38 1 5.6672 4.0528 2.4775 39 1 7.2150 6.4482 1.2376 40 1 6.7263 8.0392 4.3987 41 1 7.8502 3.4058 1.2390 42 1 8.1562 4.6038 -0.0906 43 1 3.9995 0.9052 -0.7161 44 1 3.8532 0.9570 1.0571 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597203554.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:19 Heat of formation + Delta-G solvation = -9.831985 kcal Electronic energy + Delta-G solvation = -19021.074885 eV Core-core repulsion = 16358.460145 eV Total energy + Delta-G solvation = -2662.614740 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.49384 -38.26163 -34.29632 -32.66457 -31.57057 -29.41610 -27.98271 -25.36352 -24.71579 -23.80630 -22.35992 -21.64168 -19.80216 -19.52157 -18.48694 -16.59955 -15.33682 -14.96873 -14.82453 -14.64396 -14.37739 -13.93868 -13.65053 -13.36126 -13.24710 -13.09852 -12.40678 -12.00636 -11.81641 -11.65509 -11.48725 -11.29700 -11.25414 -11.00465 -10.90262 -10.86336 -10.73186 -10.58532 -10.34399 -10.09134 -9.97366 -9.81641 -9.48559 -9.10561 -8.87278 -8.40779 -7.89773 -6.03115 -4.07421 3.31105 3.36144 3.38352 4.41479 4.59543 4.71034 4.82361 5.03674 5.11161 5.21950 5.25595 5.29865 5.32506 5.51597 5.53879 5.68996 5.71492 5.71715 5.77488 5.83837 5.87753 5.95444 6.03141 6.06338 6.10497 6.16318 6.23866 6.30231 6.33816 6.42264 6.43496 6.52476 6.57234 6.66186 6.72760 6.74723 6.88966 7.19321 7.26728 7.75502 7.95022 8.16576 8.40969 8.95375 9.57225 11.06453 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.031582 B = 0.004247 C = 0.004084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.370165 B = 6591.072540 C = 6853.984785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.087 4.087 4 H 0.068 0.932 5 C -0.112 4.112 6 C -0.121 4.121 7 C -0.103 4.103 8 C -0.079 4.079 9 H 0.069 0.931 10 C 0.027 3.973 11 N -0.482 5.482 12 C 0.007 3.993 13 C 0.041 3.959 14 C -0.517 4.517 15 H 0.056 0.944 16 C 0.067 3.933 17 N -0.887 5.887 18 Si 0.891 3.109 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.277 1.277 22 C -0.006 4.006 23 C -0.108 4.108 24 H 0.053 0.947 25 H 0.055 0.945 26 H 0.049 0.951 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.075 0.925 34 H 0.053 0.947 35 H 0.033 0.967 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.050 0.950 39 H 0.063 0.937 40 H 0.262 0.738 41 H 0.051 0.949 42 H 0.059 0.941 43 H 0.058 0.942 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.479 -11.799 -8.461 17.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.105 4.105 4 H 0.087 0.913 5 C -0.150 4.150 6 C -0.159 4.159 7 C -0.141 4.141 8 C -0.098 4.098 9 H 0.088 0.912 10 C -0.102 4.102 11 N -0.204 5.204 12 C -0.122 4.122 13 C 0.022 3.978 14 C -0.555 4.555 15 H 0.074 0.926 16 C -0.136 4.136 17 N -0.524 5.524 18 Si 0.718 3.282 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.203 1.203 22 C -0.135 4.135 23 C -0.146 4.146 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.071 0.929 35 H 0.051 0.949 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.821 -11.323 -9.006 18.067 hybrid contribution 0.649 -0.627 1.686 1.912 sum -10.171 -11.950 -7.320 17.316 Atomic orbital electron populations 1.21821 0.96169 1.01177 1.01888 1.21572 0.95643 0.96763 1.01736 1.21174 0.95758 0.95358 0.98231 0.91326 1.21620 0.99983 0.96119 0.97252 1.21569 0.96816 0.96166 1.01302 1.21445 0.94192 1.01847 0.96607 1.21071 0.94937 0.95142 0.98645 0.91247 1.22619 0.94950 0.92746 0.99891 1.68850 1.06973 1.15066 1.29507 1.23968 1.02243 0.98290 0.87654 1.20088 0.90844 0.93406 0.93466 1.21018 1.25837 1.09309 0.99371 0.92584 1.25010 0.94988 0.95041 0.98528 1.69965 1.35371 1.12315 1.34740 0.86690 0.80272 0.77507 0.83715 1.20165 1.21233 1.20275 1.23988 0.90117 1.00737 0.98679 1.21623 0.94652 0.96890 1.01402 0.92834 0.92552 0.93169 0.92232 0.92183 0.92364 0.92367 0.92501 0.92216 0.90681 0.92852 0.94915 0.92100 0.92053 0.93155 0.91893 0.92851 0.93036 0.92226 0.92287 0.92371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.67 37.16 0.36 -0.93 16 2 C -0.12 -1.13 5.40 -26.73 -0.14 -1.27 16 3 C -0.09 -0.95 2.19 -90.62 -0.20 -1.15 16 4 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 5 C -0.11 -1.18 4.96 -26.73 -0.13 -1.32 16 6 C -0.12 -1.45 5.92 -26.73 -0.16 -1.61 16 7 C -0.10 -1.45 5.09 -26.73 -0.14 -1.58 16 8 C -0.08 -1.18 2.23 -90.59 -0.20 -1.38 16 9 H 0.07 1.16 7.55 -51.93 -0.39 0.76 16 10 C 0.03 0.46 4.21 -3.82 -0.02 0.44 16 11 N -0.48 -9.79 5.87 -244.60 -1.44 -11.23 16 12 C 0.01 0.17 6.50 -7.54 -0.05 0.12 16 13 C 0.04 1.04 3.77 -91.24 -0.34 0.70 16 14 C -0.52 -14.25 8.82 -34.44 -0.30 -14.56 16 15 H 0.06 1.52 7.81 -52.48 -0.41 1.11 16 16 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16 17 N -0.89 -25.77 13.26 55.43 0.74 -25.03 16 18 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 C -0.01 -0.14 7.28 -7.53 -0.05 -0.19 16 23 C -0.11 -1.33 4.49 -26.71 -0.12 -1.45 16 24 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.46 6.57 -51.93 -0.34 0.12 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.56 6.57 -51.93 -0.34 0.22 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 1.21 7.75 -51.92 -0.40 0.81 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.03 0.58 7.56 -51.93 -0.39 0.19 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.06 1.48 8.14 -51.93 -0.42 1.06 16 38 H 0.05 1.19 7.66 -51.93 -0.40 0.79 16 39 H 0.06 1.75 8.11 -51.93 -0.42 1.33 16 40 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 41 H 0.05 1.10 7.72 -51.93 -0.40 0.69 16 42 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 335.57 15.07 5.06 5.06 Total: -1.00 -27.62 335.57 -10.81 -38.43 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -8.55 Total: -1.00 kcal Atomic # 6 Polarization: -20.81 SS G_CDS: -1.60 Total: -22.40 kcal Atomic # 7 Polarization: -35.56 SS G_CDS: -0.70 Total: -36.26 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -27.62 -10.81 -38.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597203554.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.600 kcal (2) G-P(sol) polarization free energy of solvation -27.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds