Wall clock time and date at job start Mon Mar 30 2020 06:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47515 * 2 1 4 4 H 1.09001 * 109.46843 * 54.99918 * 3 2 1 5 5 C 1.53003 * 109.46897 * 295.00259 * 3 2 1 6 6 C 1.53002 * 109.46897 * 179.97438 * 5 3 2 7 7 C 1.52996 * 109.47201 * 59.99589 * 6 5 3 8 8 C 1.52999 * 109.47179 * 300.00021 * 7 6 5 9 9 H 1.08997 * 109.46828 * 299.99992 * 8 7 6 10 10 C 1.53006 * 109.46811 * 180.02562 * 8 7 6 11 11 N 1.46898 * 109.47006 * 64.99980 * 10 8 7 12 12 C 1.47482 * 110.99981 * 74.02733 * 11 10 8 13 13 C 1.53514 * 87.93215 * 138.69915 * 12 11 10 14 14 C 1.50695 * 114.17253 * 220.32576 * 13 12 11 15 15 H 1.08006 * 119.99998 * 93.84370 * 14 13 12 16 16 C 1.37875 * 120.00494 * 273.84600 * 14 13 12 17 17 N 1.31519 * 119.99625 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00489 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.46936 * 59.99442 * 18 16 14 20 20 H 1.48500 * 109.47451 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.46909 * 299.99821 * 18 16 14 22 22 C 1.47486 * 110.99742 * 169.99744 * 11 10 8 23 23 C 1.52996 * 109.47201 * 174.99848 * 3 2 1 24 24 H 1.09003 * 109.47228 * 300.00042 * 1 2 3 25 25 H 1.09001 * 109.47299 * 59.99914 * 1 2 3 26 26 H 1.09001 * 109.47588 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47267 * 239.99463 * 2 1 3 28 28 H 1.09001 * 109.47299 * 120.00086 * 2 1 3 29 29 H 1.08997 * 109.46651 * 299.99693 * 5 3 2 30 30 H 1.09002 * 109.47262 * 59.99682 * 5 3 2 31 31 H 1.08998 * 109.46646 * 179.97438 * 6 5 3 32 32 H 1.09001 * 109.46843 * 299.99659 * 6 5 3 33 33 H 1.09009 * 109.47102 * 179.97438 * 7 6 5 34 34 H 1.09001 * 109.47165 * 60.00267 * 7 6 5 35 35 H 1.09001 * 109.47002 * 184.99763 * 10 8 7 36 36 H 1.08993 * 109.46955 * 305.00200 * 10 8 7 37 37 H 1.09000 * 113.47853 * 253.46569 * 12 11 10 38 38 H 1.09003 * 113.47974 * 23.93820 * 12 11 10 39 39 H 1.09003 * 114.33764 * 87.63837 * 13 12 11 40 40 H 0.97007 * 119.99474 * 180.02562 * 17 16 14 41 41 H 1.08997 * 113.47765 * 336.06025 * 22 11 10 42 42 H 1.09000 * 113.47587 * 106.53508 * 22 11 10 43 43 H 1.09001 * 109.47165 * 60.00267 * 23 3 2 44 44 H 1.08995 * 109.47118 * 299.99762 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 1.6353 2.1265 -1.3074 6 6 2.1448 3.5692 -1.3071 7 6 3.6696 3.5715 -1.1810 8 6 4.0743 2.8875 0.1263 9 1 3.6393 3.4263 0.9680 10 6 5.5991 2.8904 0.2526 11 7 6.0778 4.2739 0.3735 12 6 5.7842 4.8197 1.7118 13 6 7.1795 5.4598 1.6958 14 6 7.9062 5.3886 3.0140 15 1 8.5881 4.5746 3.2114 16 6 7.7007 6.3624 3.9681 17 7 6.8707 7.3539 3.7275 18 14 8.6021 6.2746 5.6019 19 1 10.0670 6.3113 5.3615 20 1 8.2103 7.4316 6.4463 21 1 8.2459 5.0112 6.2963 22 6 7.5074 4.3090 0.7342 23 6 3.5649 1.4442 0.1258 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 2.0699 1.5874 -2.1491 30 1 0.5489 2.1252 -1.3969 31 1 1.8568 4.0563 -2.2387 32 1 1.7098 4.1080 -0.4653 33 1 4.0327 4.5994 -1.1813 34 1 4.1046 3.0328 -2.0228 35 1 5.8914 2.3261 1.1382 36 1 6.0379 2.4302 -0.6327 37 1 4.9727 5.5474 1.7156 38 1 5.6672 4.0528 2.4775 39 1 7.2150 6.4482 1.2376 40 1 6.7263 8.0392 4.3987 41 1 7.8502 3.4058 1.2390 42 1 8.1562 4.6038 -0.0906 43 1 3.9995 0.9052 -0.7161 44 1 3.8532 0.9570 1.0571 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597203554.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:18 Heat of formation + Delta-G solvation = -24.390592 kcal Electronic energy + Delta-G solvation = -19021.706193 eV Core-core repulsion = 16358.460145 eV Total energy + Delta-G solvation = -2663.246049 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.98105 -39.55107 -35.41955 -34.53979 -32.81025 -30.54914 -29.41562 -27.10050 -26.54141 -24.89956 -23.69022 -22.74729 -20.88337 -20.66038 -20.31084 -18.64438 -16.74930 -16.45721 -16.26905 -16.00150 -15.67209 -15.23693 -14.95301 -14.60649 -14.37086 -14.14143 -13.82844 -13.35572 -13.31079 -13.17349 -12.92860 -12.73415 -12.53047 -12.33337 -12.26052 -12.18527 -11.92867 -11.76721 -11.62147 -11.49137 -11.27190 -11.20867 -10.86427 -10.76338 -10.65876 -10.48654 -9.64286 -8.15920 -6.27708 1.41950 1.43552 1.51552 2.41677 3.13133 3.31856 3.67358 3.82297 3.89067 4.09822 4.24813 4.25291 4.32920 4.40356 4.46866 4.53357 4.58091 4.60887 4.65788 4.74019 4.79782 4.81714 4.81932 4.89538 4.93236 4.96829 5.03458 5.08573 5.20125 5.22453 5.22940 5.29322 5.34612 5.36964 5.46684 5.54470 5.57020 5.58762 5.62447 5.69242 5.84381 6.29398 6.42918 6.81354 7.40769 8.93730 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.031582 B = 0.004247 C = 0.004084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.370165 B = 6591.072540 C = 6853.984785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.116 4.116 3 C -0.085 4.085 4 H 0.056 0.944 5 C -0.107 4.107 6 C -0.119 4.119 7 C -0.100 4.100 8 C -0.075 4.075 9 H 0.044 0.956 10 C 0.027 3.973 11 N -0.477 5.477 12 C 0.023 3.977 13 C 0.021 3.979 14 C -0.534 4.534 15 H 0.058 0.942 16 C 0.015 3.985 17 N -0.922 5.922 18 Si 0.959 3.041 19 H -0.268 1.268 20 H -0.284 1.284 21 H -0.269 1.269 22 C 0.007 3.993 23 C -0.101 4.101 24 H 0.048 0.952 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.067 0.933 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.064 0.936 35 H 0.028 0.972 36 H 0.079 0.921 37 H 0.042 0.958 38 H 0.044 0.956 39 H 0.029 0.971 40 H 0.263 0.737 41 H 0.058 0.942 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.778 -13.803 -8.987 19.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.104 4.104 4 H 0.074 0.926 5 C -0.144 4.144 6 C -0.156 4.156 7 C -0.137 4.137 8 C -0.094 4.094 9 H 0.063 0.937 10 C -0.102 4.102 11 N -0.199 5.199 12 C -0.107 4.107 13 C 0.002 3.998 14 C -0.572 4.572 15 H 0.077 0.923 16 C -0.185 4.185 17 N -0.561 5.561 18 Si 0.783 3.217 19 H -0.193 1.193 20 H -0.209 1.209 21 H -0.195 1.195 22 C -0.121 4.121 23 C -0.139 4.139 24 H 0.067 0.933 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.086 0.914 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.082 0.918 35 H 0.046 0.954 36 H 0.098 0.902 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.048 0.952 40 H 0.072 0.928 41 H 0.077 0.923 42 H 0.091 0.909 43 H 0.090 0.910 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.117 -13.343 -9.544 19.816 hybrid contribution 0.744 0.011 1.800 1.947 sum -10.373 -13.332 -7.744 18.583 Atomic orbital electron populations 1.21814 0.95362 1.01887 1.01910 1.21534 0.96324 0.95399 1.02094 1.21150 0.94552 0.96542 0.98112 0.92597 1.21591 1.00875 0.94757 0.97195 1.21545 0.95132 0.97523 1.01429 1.21384 0.95831 1.00131 0.96378 1.21028 0.93229 0.96937 0.98214 0.93739 1.22714 0.96580 0.90438 1.00442 1.68799 1.06200 1.17562 1.27298 1.23653 1.00217 0.97641 0.89172 1.20043 0.92658 0.93230 0.93859 1.21364 1.26015 1.09492 1.00356 0.92344 1.25844 0.95757 0.94630 1.02220 1.70098 1.36860 1.13104 1.35999 0.85609 0.79202 0.77692 0.79158 1.19287 1.20930 1.19450 1.23828 0.91066 0.99188 0.98063 1.21571 0.95791 0.94762 1.01816 0.93300 0.92069 0.92151 0.91383 0.92330 0.91387 0.90978 0.91327 0.93391 0.93438 0.91770 0.95363 0.90215 0.93977 0.93776 0.95234 0.92823 0.92332 0.90893 0.91032 0.92634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 9.67 71.98 0.70 -1.51 16 2 C -0.12 -1.90 5.40 30.59 0.17 -1.74 16 3 C -0.08 -1.70 2.19 -10.79 -0.02 -1.73 16 4 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 5 C -0.11 -1.99 4.96 30.60 0.15 -1.84 16 6 C -0.12 -2.70 5.92 30.59 0.18 -2.51 16 7 C -0.10 -2.71 5.09 30.59 0.16 -2.56 16 8 C -0.08 -2.19 2.23 -10.77 -0.02 -2.22 16 9 H 0.04 1.51 7.55 -2.39 -0.02 1.50 16 10 C 0.03 0.89 4.21 86.31 0.36 1.26 16 11 N -0.48 -19.43 5.87 -927.79 -5.44 -24.88 16 12 C 0.02 1.08 6.50 83.58 0.54 1.62 16 13 C 0.02 1.11 3.77 -11.20 -0.04 1.06 16 14 C -0.53 -29.84 8.82 25.60 0.23 -29.61 16 15 H 0.06 3.16 7.81 -2.91 -0.02 3.13 16 16 C 0.01 0.84 5.46 84.65 0.46 1.30 16 17 N -0.92 -54.90 13.26 21.45 0.28 -54.62 16 18 Si 0.96 43.63 29.54 68.60 2.03 45.66 16 19 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 20 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 21 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 22 C 0.01 0.31 7.28 83.58 0.61 0.92 16 23 C -0.10 -2.33 4.49 30.61 0.14 -2.20 16 24 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.06 0.82 6.57 -2.39 -0.02 0.81 16 26 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.07 1.18 6.57 -2.39 -0.02 1.16 16 31 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.05 1.54 7.75 -2.38 -0.02 1.53 16 34 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.03 0.97 7.56 -2.39 -0.02 0.95 16 36 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 37 H 0.04 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.04 2.14 7.66 -2.39 -0.02 2.12 16 39 H 0.03 1.72 8.11 -2.39 -0.02 1.70 16 40 H 0.26 14.83 8.31 -92.70 -0.77 14.06 16 41 H 0.06 2.43 7.72 -2.39 -0.02 2.41 16 42 H 0.07 2.93 8.14 -2.39 -0.02 2.91 16 43 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -59.67 335.57 1.38 -58.29 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: 0.91 Total: 15.29 kcal Atomic # 6 Polarization: -43.34 SS G_CDS: 3.60 Total: -39.74 kcal Atomic # 7 Polarization: -74.33 SS G_CDS: -5.16 Total: -79.49 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -59.67 1.38 -58.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597203554.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.902 kcal (2) G-P(sol) polarization free energy of solvation -59.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds