Wall clock time and date at job start Mon Mar 30 2020 06:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47251 * 2 1 4 4 H 1.08997 * 109.47296 * 54.99563 * 3 2 1 5 5 C 1.53005 * 109.47023 * 294.99764 * 3 2 1 6 6 C 1.52994 * 109.47476 * 179.97438 * 5 3 2 7 7 C 1.53008 * 109.46836 * 60.00167 * 6 5 3 8 8 C 1.53003 * 109.46913 * 299.99602 * 7 6 5 9 9 C 1.52998 * 109.47045 * 175.00101 * 3 2 1 10 10 H 1.08997 * 109.47512 * 59.99595 * 9 3 2 11 11 C 1.53003 * 109.46896 * 299.99165 * 9 3 2 12 12 N 1.46497 * 109.47002 * 175.00230 * 11 9 3 13 13 C 1.36942 * 120.00216 * 270.00516 * 12 11 9 14 14 H 1.07995 * 120.00306 * 138.63983 * 13 12 11 15 15 C 1.38814 * 119.99524 * 318.64185 * 13 12 11 16 16 N 1.31618 * 119.99845 * 159.47276 * 15 13 12 17 17 Si 1.86798 * 120.00176 * 339.47235 * 15 13 12 18 18 H 1.48503 * 109.47117 * 95.33525 * 17 15 13 19 19 H 1.48503 * 109.47115 * 215.32963 * 17 15 13 20 20 H 1.48500 * 109.47153 * 335.33720 * 17 15 13 21 21 C 1.46503 * 120.00233 * 90.00118 * 12 11 9 22 22 C 1.52994 * 117.50158 * 184.83374 * 21 12 11 23 23 C 1.53003 * 117.49892 * 116.17073 * 21 12 11 24 24 H 1.09000 * 109.47506 * 300.00525 * 1 2 3 25 25 H 1.09006 * 109.47035 * 60.00145 * 1 2 3 26 26 H 1.08994 * 109.47314 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46984 * 239.99479 * 2 1 3 28 28 H 1.09003 * 109.46970 * 119.99088 * 2 1 3 29 29 H 1.09008 * 109.46582 * 300.00367 * 5 3 2 30 30 H 1.09000 * 109.47141 * 59.99579 * 5 3 2 31 31 H 1.09001 * 109.47199 * 179.97438 * 6 5 3 32 32 H 1.08995 * 109.47357 * 300.00414 * 6 5 3 33 33 H 1.09003 * 109.46946 * 180.02562 * 7 6 5 34 34 H 1.08997 * 109.47461 * 60.00011 * 7 6 5 35 35 H 1.08997 * 109.47391 * 300.00451 * 8 7 6 36 36 H 1.09001 * 109.47203 * 179.97438 * 8 7 6 37 37 H 1.08999 * 109.47655 * 295.00255 * 11 9 3 38 38 H 1.08995 * 109.46615 * 55.00839 * 11 9 3 39 39 H 0.96996 * 120.00620 * 179.97438 * 16 15 13 40 40 H 1.08998 * 115.54762 * 330.50405 * 21 12 11 41 41 H 1.09000 * 117.50027 * 359.97438 * 22 21 12 42 42 H 1.08995 * 117.50113 * 145.02569 * 22 21 12 43 43 H 1.08998 * 117.50096 * 214.98526 * 23 21 12 44 44 H 1.08998 * 117.49685 * 0.02562 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 1.6353 2.1265 -1.3074 6 6 2.1447 3.5692 -1.3073 7 6 3.6696 3.5715 -1.1812 8 6 4.0743 2.8876 0.1262 9 6 3.5648 1.4443 0.1257 10 1 3.9995 0.9052 -0.7160 11 6 3.9695 0.7604 1.4332 12 7 5.4293 0.6553 1.4978 13 6 6.0593 -0.4502 0.9915 14 1 6.9733 -0.3397 0.4270 15 6 5.5230 -1.7128 1.2039 16 7 5.8617 -2.7124 0.4176 17 14 4.3207 -1.9931 2.6058 18 1 2.9306 -1.8847 2.0948 19 1 4.5337 -3.3471 3.1773 20 1 4.5418 -0.9705 3.6596 21 6 6.2152 1.7329 2.1040 22 6 7.7395 1.6176 2.0402 23 6 7.0101 1.4021 3.3687 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 2.0700 1.5873 -2.1492 30 1 0.5490 2.1252 -1.3971 31 1 1.8568 4.0563 -2.2389 32 1 1.7098 4.1080 -0.4655 33 1 4.0325 4.5993 -1.1807 34 1 4.1046 3.0327 -2.0230 35 1 3.6393 3.4264 0.9679 36 1 5.1606 2.8889 0.2158 37 1 3.6099 1.3486 2.2774 38 1 3.5314 -0.2369 1.4722 39 1 5.4874 -3.5948 0.5662 40 1 5.7823 2.7304 2.0280 41 1 8.1576 0.7397 1.5477 42 1 8.3095 2.5392 1.9229 43 1 7.1006 2.1821 4.1247 44 1 6.9487 0.3827 3.7495 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600116098.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:18 Heat of formation + Delta-G solvation = 15.926700 kcal Electronic energy + Delta-G solvation = -20188.009022 eV Core-core repulsion = 17526.511262 eV Total energy + Delta-G solvation = -2661.497760 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.04309 -36.89871 -33.73999 -33.48388 -31.79646 -29.76198 -28.71140 -25.22364 -24.08509 -23.33571 -21.49714 -20.82560 -20.34419 -19.56069 -19.15498 -16.39181 -15.52050 -15.37165 -14.77047 -14.49292 -13.87166 -13.61750 -13.51977 -13.33087 -12.95329 -12.54829 -12.48119 -12.11201 -11.84964 -11.62977 -11.27756 -11.15444 -10.88292 -10.83338 -10.74727 -10.48739 -10.42431 -10.29197 -10.07106 -9.94639 -9.77467 -9.65642 -9.46677 -9.21635 -9.15785 -8.48040 -6.59086 -5.99435 -3.44394 3.29203 3.46206 3.53972 4.51965 4.82333 4.89940 5.00953 5.07843 5.17364 5.32607 5.42000 5.48219 5.58110 5.67136 5.78260 5.83871 5.89533 5.92557 5.96264 5.98666 6.05034 6.06622 6.13414 6.22516 6.27649 6.30716 6.35868 6.45929 6.46548 6.51876 6.54532 6.57094 6.62001 6.71652 6.78938 6.84928 6.96989 7.02405 7.16273 7.22558 8.09908 8.44518 9.03402 9.72172 10.15435 11.15383 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.017220 B = 0.009974 C = 0.007289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.644830 B = 2806.701998 C = 3840.736888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.129 4.129 3 C -0.079 4.079 4 H 0.061 0.939 5 C -0.112 4.112 6 C -0.116 4.116 7 C -0.118 4.118 8 C -0.108 4.108 9 C -0.097 4.097 10 H 0.077 0.923 11 C 0.143 3.857 12 N -0.572 5.572 13 C -0.265 4.265 14 H 0.080 0.920 15 C 0.042 3.958 16 N -0.899 5.899 17 Si 0.870 3.130 18 H -0.281 1.281 19 H -0.303 1.303 20 H -0.267 1.267 21 C 0.121 3.879 22 C -0.190 4.190 23 C -0.227 4.227 24 H 0.048 0.952 25 H 0.052 0.948 26 H 0.048 0.952 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.051 0.949 34 H 0.059 0.941 35 H 0.048 0.952 36 H 0.071 0.929 37 H 0.035 0.965 38 H 0.060 0.940 39 H 0.263 0.737 40 H 0.094 0.906 41 H 0.102 0.898 42 H 0.075 0.925 43 H 0.071 0.929 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.804 10.638 -0.743 13.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.167 4.167 3 C -0.098 4.098 4 H 0.079 0.921 5 C -0.150 4.150 6 C -0.154 4.154 7 C -0.156 4.156 8 C -0.146 4.146 9 C -0.118 4.118 10 H 0.096 0.904 11 C 0.018 3.982 12 N -0.290 5.290 13 C -0.393 4.393 14 H 0.097 0.903 15 C -0.159 4.159 16 N -0.539 5.539 17 Si 0.700 3.300 18 H -0.208 1.208 19 H -0.231 1.231 20 H -0.191 1.191 21 C 0.012 3.988 22 C -0.229 4.229 23 C -0.268 4.268 24 H 0.067 0.933 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.090 0.910 37 H 0.054 0.946 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.111 0.889 41 H 0.120 0.880 42 H 0.093 0.907 43 H 0.090 0.910 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.831 10.431 -0.805 13.068 hybrid contribution -0.578 -0.416 0.841 1.102 sum -8.409 10.015 0.036 13.078 Atomic orbital electron populations 1.21812 0.96748 1.00961 1.01173 1.21727 0.94846 0.97026 1.03064 1.21160 0.96387 0.95207 0.97045 0.92072 1.21608 0.99701 0.95492 0.98177 1.21513 0.96334 0.96852 1.00657 1.21540 0.95347 0.99679 0.99000 1.21592 1.01490 0.95542 0.95952 1.21716 0.92861 0.95802 1.01416 0.90422 1.21288 0.84286 0.98615 0.93987 1.43655 1.00611 1.18584 1.66188 1.18690 1.10263 0.82806 1.27590 0.90302 1.25536 0.97900 0.95462 0.97034 1.69844 1.45678 1.01621 1.36805 0.87026 0.80995 0.76686 0.85253 1.20835 1.23087 1.19139 1.21272 0.89556 0.92194 0.95764 1.23059 0.96043 1.02314 1.01445 1.23385 1.09858 1.01746 0.91819 0.93254 0.92899 0.93330 0.91817 0.91296 0.92134 0.92558 0.92924 0.92572 0.93006 0.92184 0.93327 0.91006 0.94630 0.92231 0.92738 0.88885 0.87977 0.90666 0.91009 0.89417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.67 37.16 0.36 -1.66 16 2 C -0.13 -2.14 5.19 -26.73 -0.14 -2.27 16 3 C -0.08 -1.23 1.72 -90.62 -0.16 -1.38 16 4 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 5 C -0.11 -1.52 4.96 -26.73 -0.13 -1.65 16 6 C -0.12 -1.45 5.92 -26.73 -0.16 -1.61 16 7 C -0.12 -1.63 5.92 -26.73 -0.16 -1.78 16 8 C -0.11 -1.72 4.35 -26.70 -0.12 -1.84 16 9 C -0.10 -1.77 1.93 -90.59 -0.17 -1.94 16 10 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 11 C 0.14 3.02 3.79 -4.04 -0.02 3.00 16 12 N -0.57 -13.21 2.17 -165.67 -0.36 -13.57 16 13 C -0.26 -7.18 8.88 -15.06 -0.13 -7.32 16 14 H 0.08 2.33 6.94 -52.49 -0.36 1.97 16 15 C 0.04 1.18 5.31 -17.43 -0.09 1.09 16 16 N -0.90 -27.02 13.97 55.49 0.78 -26.25 16 17 Si 0.87 22.02 25.11 -169.99 -4.27 17.75 16 18 H -0.28 -6.77 5.79 56.52 0.33 -6.44 16 19 H -0.30 -7.87 7.11 56.52 0.40 -7.46 16 20 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 21 C 0.12 2.44 5.39 -67.93 -0.37 2.07 16 22 C -0.19 -3.69 9.81 -26.69 -0.26 -3.95 16 23 C -0.23 -4.45 10.34 -26.69 -0.28 -4.73 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.05 0.64 6.57 -51.93 -0.34 0.30 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 28 H 0.07 1.31 5.14 -51.93 -0.27 1.04 16 29 H 0.06 0.86 8.14 -51.92 -0.42 0.44 16 30 H 0.06 0.68 6.56 -51.93 -0.34 0.34 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 1.25 5.92 -51.93 -0.31 0.94 16 37 H 0.04 0.70 8.07 -51.93 -0.42 0.28 16 38 H 0.06 1.37 1.72 -51.93 -0.09 1.28 16 39 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 40 H 0.09 1.67 6.54 -51.93 -0.34 1.33 16 41 H 0.10 2.24 6.48 -51.93 -0.34 1.90 16 42 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 43 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.09 1.94 8.14 -51.93 -0.42 1.51 16 LS Contribution 320.65 15.07 4.83 4.83 Total: -1.00 -28.31 320.65 -8.77 -37.09 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -7.93 Total: 4.12 kcal Atomic # 6 Polarization: -22.15 SS G_CDS: -1.82 Total: -23.97 kcal Atomic # 7 Polarization: -40.23 SS G_CDS: 0.42 Total: -39.82 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.27 Total: 17.75 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.31 -8.77 -37.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600116098.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.015 kcal (2) G-P(sol) polarization free energy of solvation -28.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds