Wall clock time and date at job start Mon Mar 30 2020 06:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47251 * 2 1 4 4 H 1.08997 * 109.47296 * 54.99563 * 3 2 1 5 5 C 1.53005 * 109.47023 * 294.99764 * 3 2 1 6 6 C 1.52994 * 109.47476 * 179.97438 * 5 3 2 7 7 C 1.53008 * 109.46836 * 60.00167 * 6 5 3 8 8 C 1.53003 * 109.46913 * 299.99602 * 7 6 5 9 9 C 1.52998 * 109.47045 * 175.00101 * 3 2 1 10 10 H 1.08997 * 109.47512 * 59.99595 * 9 3 2 11 11 C 1.53003 * 109.46896 * 299.99165 * 9 3 2 12 12 N 1.46497 * 109.47002 * 175.00230 * 11 9 3 13 13 C 1.36942 * 120.00216 * 270.00516 * 12 11 9 14 14 H 1.07995 * 120.00306 * 138.63983 * 13 12 11 15 15 C 1.38814 * 119.99524 * 318.64185 * 13 12 11 16 16 N 1.31618 * 119.99845 * 159.47276 * 15 13 12 17 17 Si 1.86798 * 120.00176 * 339.47235 * 15 13 12 18 18 H 1.48503 * 109.47117 * 95.33525 * 17 15 13 19 19 H 1.48503 * 109.47115 * 215.32963 * 17 15 13 20 20 H 1.48500 * 109.47153 * 335.33720 * 17 15 13 21 21 C 1.46503 * 120.00233 * 90.00118 * 12 11 9 22 22 C 1.52994 * 117.50158 * 184.83374 * 21 12 11 23 23 C 1.53003 * 117.49892 * 116.17073 * 21 12 11 24 24 H 1.09000 * 109.47506 * 300.00525 * 1 2 3 25 25 H 1.09006 * 109.47035 * 60.00145 * 1 2 3 26 26 H 1.08994 * 109.47314 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46984 * 239.99479 * 2 1 3 28 28 H 1.09003 * 109.46970 * 119.99088 * 2 1 3 29 29 H 1.09008 * 109.46582 * 300.00367 * 5 3 2 30 30 H 1.09000 * 109.47141 * 59.99579 * 5 3 2 31 31 H 1.09001 * 109.47199 * 179.97438 * 6 5 3 32 32 H 1.08995 * 109.47357 * 300.00414 * 6 5 3 33 33 H 1.09003 * 109.46946 * 180.02562 * 7 6 5 34 34 H 1.08997 * 109.47461 * 60.00011 * 7 6 5 35 35 H 1.08997 * 109.47391 * 300.00451 * 8 7 6 36 36 H 1.09001 * 109.47203 * 179.97438 * 8 7 6 37 37 H 1.08999 * 109.47655 * 295.00255 * 11 9 3 38 38 H 1.08995 * 109.46615 * 55.00839 * 11 9 3 39 39 H 0.96996 * 120.00620 * 179.97438 * 16 15 13 40 40 H 1.08998 * 115.54762 * 330.50405 * 21 12 11 41 41 H 1.09000 * 117.50027 * 359.97438 * 22 21 12 42 42 H 1.08995 * 117.50113 * 145.02569 * 22 21 12 43 43 H 1.08998 * 117.50096 * 214.98526 * 23 21 12 44 44 H 1.08998 * 117.49685 * 0.02562 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 1.6353 2.1265 -1.3074 6 6 2.1447 3.5692 -1.3073 7 6 3.6696 3.5715 -1.1812 8 6 4.0743 2.8876 0.1262 9 6 3.5648 1.4443 0.1257 10 1 3.9995 0.9052 -0.7160 11 6 3.9695 0.7604 1.4332 12 7 5.4293 0.6553 1.4978 13 6 6.0593 -0.4502 0.9915 14 1 6.9733 -0.3397 0.4270 15 6 5.5230 -1.7128 1.2039 16 7 5.8617 -2.7124 0.4176 17 14 4.3207 -1.9931 2.6058 18 1 2.9306 -1.8847 2.0948 19 1 4.5337 -3.3471 3.1773 20 1 4.5418 -0.9705 3.6596 21 6 6.2152 1.7329 2.1040 22 6 7.7395 1.6176 2.0402 23 6 7.0101 1.4021 3.3687 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 2.0700 1.5873 -2.1492 30 1 0.5490 2.1252 -1.3971 31 1 1.8568 4.0563 -2.2389 32 1 1.7098 4.1080 -0.4655 33 1 4.0325 4.5993 -1.1807 34 1 4.1046 3.0327 -2.0230 35 1 3.6393 3.4264 0.9679 36 1 5.1606 2.8889 0.2158 37 1 3.6099 1.3486 2.2774 38 1 3.5314 -0.2369 1.4722 39 1 5.4874 -3.5948 0.5662 40 1 5.7823 2.7304 2.0280 41 1 8.1576 0.7397 1.5477 42 1 8.3095 2.5392 1.9229 43 1 7.1006 2.1821 4.1247 44 1 6.9487 0.3827 3.7495 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600116098.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:17 Heat of formation + Delta-G solvation = 1.733653 kcal Electronic energy + Delta-G solvation = -20188.624478 eV Core-core repulsion = 17526.511262 eV Total energy + Delta-G solvation = -2662.113216 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.40233 -38.51393 -35.35802 -34.78073 -33.70951 -31.35203 -29.88248 -26.97843 -25.72414 -24.63704 -23.07773 -22.15071 -21.71997 -21.19221 -20.46823 -18.38972 -17.26593 -17.13504 -16.12936 -15.70434 -15.46204 -15.05005 -14.96221 -14.73971 -14.39324 -14.14036 -13.90506 -13.74137 -13.36225 -13.08201 -12.79154 -12.48980 -12.46869 -12.23641 -12.16602 -11.96655 -11.85442 -11.80512 -11.57650 -11.54207 -11.38186 -11.17519 -11.01996 -10.66887 -10.58667 -10.52733 -8.50867 -8.20497 -5.60881 1.24957 1.35685 1.47343 2.39088 3.01391 3.22693 3.35880 3.80311 3.90477 3.97997 4.18368 4.27834 4.30528 4.38961 4.42812 4.46990 4.50274 4.59120 4.67174 4.69885 4.74692 4.85139 4.86777 4.93324 4.95234 5.01841 5.03032 5.07823 5.19162 5.20821 5.26323 5.31256 5.39440 5.43701 5.45777 5.49375 5.52822 5.53780 5.69796 5.79096 5.97791 6.22385 7.04184 7.66062 8.08683 8.98486 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.017220 B = 0.009974 C = 0.007289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.644830 B = 2806.701998 C = 3840.736888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.131 4.131 3 C -0.073 4.073 4 H 0.078 0.922 5 C -0.109 4.109 6 C -0.111 4.111 7 C -0.116 4.116 8 C -0.103 4.103 9 C -0.089 4.089 10 H 0.033 0.967 11 C 0.137 3.863 12 N -0.584 5.584 13 C -0.243 4.243 14 H 0.041 0.959 15 C -0.013 4.013 16 N -0.948 5.948 17 Si 0.930 3.070 18 H -0.266 1.266 19 H -0.313 1.313 20 H -0.261 1.261 21 C 0.108 3.892 22 C -0.189 4.189 23 C -0.219 4.219 24 H 0.063 0.937 25 H 0.070 0.930 26 H 0.048 0.952 27 H 0.040 0.960 28 H 0.039 0.961 29 H 0.044 0.956 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.042 0.958 35 H 0.068 0.932 36 H 0.053 0.947 37 H 0.056 0.944 38 H 0.038 0.962 39 H 0.261 0.739 40 H 0.127 0.873 41 H 0.065 0.935 42 H 0.112 0.888 43 H 0.110 0.890 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.938 13.975 0.289 17.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.169 4.169 3 C -0.092 4.092 4 H 0.097 0.903 5 C -0.147 4.147 6 C -0.148 4.148 7 C -0.154 4.154 8 C -0.141 4.141 9 C -0.110 4.110 10 H 0.052 0.948 11 C 0.013 3.987 12 N -0.303 5.303 13 C -0.374 4.374 14 H 0.058 0.942 15 C -0.209 4.209 16 N -0.592 5.592 17 Si 0.759 3.241 18 H -0.192 1.192 19 H -0.242 1.242 20 H -0.186 1.186 21 C 0.001 3.999 22 C -0.227 4.227 23 C -0.259 4.259 24 H 0.082 0.918 25 H 0.089 0.911 26 H 0.067 0.933 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.097 0.903 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.060 0.940 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.056 0.944 39 H 0.070 0.930 40 H 0.144 0.856 41 H 0.084 0.916 42 H 0.130 0.870 43 H 0.128 0.872 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.977 13.809 0.240 17.038 hybrid contribution 0.187 -1.403 0.474 1.492 sum -9.790 12.406 0.715 15.820 Atomic orbital electron populations 1.21763 0.93921 1.01600 1.02728 1.21712 0.97358 0.97325 1.00511 1.21129 0.94103 0.94924 0.99063 0.90319 1.21588 1.01004 0.95976 0.96091 1.21499 0.94904 0.96053 1.02373 1.21520 0.96682 1.00220 0.96943 1.21529 1.00394 0.94071 0.98080 1.21545 0.94924 0.96648 0.97876 0.94824 1.21393 0.82804 0.98220 0.96268 1.43735 1.01711 1.18138 1.66724 1.18492 1.08668 0.84312 1.25885 0.94179 1.26070 1.00383 0.95363 0.99121 1.69968 1.48319 1.02089 1.38832 0.86052 0.79940 0.75783 0.82336 1.19247 1.24247 1.18560 1.21589 0.89716 0.92444 0.96146 1.23033 0.95966 1.02498 1.01170 1.23374 1.08966 1.01213 0.92364 0.91844 0.91072 0.93298 0.94080 0.94229 0.93749 0.90332 0.91032 0.90977 0.90930 0.93955 0.91339 0.92789 0.92573 0.94411 0.93021 0.85561 0.91608 0.86991 0.87155 0.92539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.51 9.67 71.98 0.70 -2.81 16 2 C -0.13 -4.28 5.19 30.59 0.16 -4.12 16 3 C -0.07 -2.14 1.72 -10.79 -0.02 -2.16 16 4 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 5 C -0.11 -2.65 4.96 30.59 0.15 -2.50 16 6 C -0.11 -2.33 5.92 30.59 0.18 -2.15 16 7 C -0.12 -2.89 5.92 30.60 0.18 -2.70 16 8 C -0.10 -3.05 4.35 30.62 0.13 -2.92 16 9 C -0.09 -3.20 1.93 -10.77 -0.02 -3.22 16 10 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 11 C 0.14 5.70 3.79 86.38 0.33 6.03 16 12 N -0.58 -27.14 2.17 -678.04 -1.47 -28.61 16 13 C -0.24 -13.81 8.88 84.03 0.75 -13.06 16 14 H 0.04 2.56 6.94 -2.91 -0.02 2.54 16 15 C -0.01 -0.76 5.31 84.86 0.45 -0.31 16 16 N -0.95 -60.13 13.97 21.65 0.30 -59.82 16 17 Si 0.93 47.12 25.11 68.60 1.72 48.84 16 18 H -0.27 -12.68 5.79 99.48 0.58 -12.11 16 19 H -0.31 -16.28 7.11 99.48 0.71 -15.57 16 20 H -0.26 -12.84 7.11 99.48 0.71 -12.13 16 21 C 0.11 4.21 5.39 44.99 0.24 4.45 16 22 C -0.19 -7.14 9.81 30.62 0.30 -6.84 16 23 C -0.22 -8.16 10.34 30.62 0.32 -7.84 16 24 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.07 1.48 6.57 -2.38 -0.02 1.47 16 26 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.04 1.50 5.14 -2.39 -0.01 1.49 16 29 H 0.04 1.22 8.14 -2.38 -0.02 1.20 16 30 H 0.08 1.59 6.56 -2.39 -0.02 1.58 16 31 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.05 1.78 5.92 -2.39 -0.01 1.76 16 37 H 0.06 2.09 8.07 -2.39 -0.02 2.07 16 38 H 0.04 1.75 1.72 -2.39 0.00 1.74 16 39 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 40 H 0.13 4.08 6.54 -2.39 -0.02 4.07 16 41 H 0.07 2.99 6.48 -2.39 -0.02 2.97 16 42 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 43 H 0.11 3.28 8.14 -2.39 -0.02 3.26 16 44 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 Total: -1.00 -65.28 320.65 5.21 -60.07 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: 0.81 Total: 19.68 kcal Atomic # 6 Polarization: -44.00 SS G_CDS: 3.85 Total: -40.15 kcal Atomic # 7 Polarization: -87.26 SS G_CDS: -1.17 Total: -88.44 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 1.72 Total: 48.84 kcal Total: -65.28 5.21 -60.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600116098.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.799 kcal (2) G-P(sol) polarization free energy of solvation -65.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds