Wall clock time and date at job start Mon Mar 30 2020 06:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47083 * 2 1 4 4 H 1.09008 * 109.46935 * 304.99955 * 3 2 1 5 5 C 1.52996 * 109.46803 * 64.99847 * 3 2 1 6 6 C 1.53009 * 109.46759 * 180.02562 * 5 3 2 7 7 C 1.53001 * 109.46942 * 299.99734 * 6 5 3 8 8 C 1.53000 * 109.46686 * 60.00393 * 7 6 5 9 9 C 1.52996 * 109.47273 * 185.00253 * 3 2 1 10 10 H 1.09003 * 109.46906 * 300.00210 * 9 3 2 11 11 C 1.53000 * 109.47048 * 59.99916 * 9 3 2 12 12 N 1.46506 * 109.46872 * 185.00044 * 11 9 3 13 13 C 1.36937 * 119.99921 * 89.99761 * 12 11 9 14 14 H 1.07999 * 120.00435 * 220.98527 * 13 12 11 15 15 C 1.38820 * 119.99845 * 40.98812 * 13 12 11 16 16 N 1.31618 * 119.99833 * 27.23910 * 15 13 12 17 17 Si 1.86793 * 119.99855 * 207.23998 * 15 13 12 18 18 H 1.48502 * 109.47466 * 270.00211 * 17 15 13 19 19 H 1.48508 * 109.47460 * 30.00089 * 17 15 13 20 20 H 1.48496 * 109.47208 * 149.99808 * 17 15 13 21 21 C 1.46498 * 120.00222 * 270.00220 * 12 11 9 22 22 C 1.52994 * 117.49863 * 194.49618 * 21 12 11 23 23 C 1.52991 * 117.49956 * 125.83347 * 21 12 11 24 24 H 1.09007 * 109.47083 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47039 * 299.99699 * 1 2 3 26 26 H 1.09002 * 109.47410 * 60.00178 * 1 2 3 27 27 H 1.08997 * 109.47039 * 240.00301 * 2 1 3 28 28 H 1.09002 * 109.47410 * 119.99822 * 2 1 3 29 29 H 1.08999 * 109.47516 * 60.00456 * 5 3 2 30 30 H 1.08997 * 109.47705 * 299.99648 * 5 3 2 31 31 H 1.09003 * 109.47013 * 180.02562 * 6 5 3 32 32 H 1.08994 * 109.47356 * 60.00087 * 6 5 3 33 33 H 1.08994 * 109.47383 * 300.00336 * 7 6 5 34 34 H 1.09003 * 109.46735 * 180.02562 * 7 6 5 35 35 H 1.09004 * 109.46762 * 179.97438 * 8 7 6 36 36 H 1.08994 * 109.47256 * 59.99865 * 8 7 6 37 37 H 1.08999 * 109.47464 * 65.00388 * 11 9 3 38 38 H 1.08998 * 109.47278 * 304.99821 * 11 9 3 39 39 H 0.97002 * 120.00004 * 4.25641 * 16 15 13 40 40 H 1.09000 * 115.54398 * 340.15908 * 21 12 11 41 41 H 1.08998 * 117.50123 * 359.97438 * 22 21 12 42 42 H 1.09000 * 117.49972 * 145.01723 * 22 21 12 43 43 H 1.09004 * 117.49721 * 214.97849 * 23 21 12 44 44 H 1.08998 * 117.50130 * 359.97438 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8419 5 6 1.6352 2.1265 1.3073 6 6 2.1446 3.5693 1.3070 7 6 3.6694 3.5716 1.1811 8 6 4.0742 2.8876 -0.1263 9 6 3.5648 1.4444 -0.1258 10 1 3.9994 0.9053 0.7160 11 6 3.9695 0.7604 -1.4331 12 7 5.4293 0.6554 -1.4977 13 6 6.0594 -0.4500 -0.9914 14 1 6.9766 -0.3400 -0.4320 15 6 5.5190 -1.7120 -1.1971 16 7 4.7714 -1.9432 -2.2554 17 14 5.8531 -3.0821 0.0279 18 1 7.0813 -3.8149 -0.3717 19 1 6.0419 -2.5008 1.3814 20 1 4.7017 -4.0196 0.0481 21 6 6.2152 1.7330 -2.1040 22 6 7.6746 1.4334 -2.4518 23 6 7.3410 2.3432 -1.2669 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 2.0698 1.5875 2.1492 30 1 0.5489 2.1253 1.3969 31 1 1.8566 4.0565 2.2386 32 1 1.7097 4.1080 0.4653 33 1 4.1044 3.0329 2.0228 34 1 4.0324 4.5994 1.1814 35 1 5.1605 2.8897 -0.2162 36 1 3.6392 3.4264 -0.9680 37 1 3.6098 1.3485 -2.2775 38 1 3.5314 -0.2369 -1.4722 39 1 4.6484 -1.2504 -2.9231 40 1 5.6654 2.3983 -2.7697 41 1 8.0502 0.4347 -2.2293 42 1 8.0852 1.9020 -3.3462 43 1 7.5324 3.4101 -1.3822 44 1 7.4969 1.9433 -0.2650 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600116101.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:20 Heat of formation + Delta-G solvation = 5.305654 kcal Electronic energy + Delta-G solvation = -20194.345243 eV Core-core repulsion = 17532.386920 eV Total energy + Delta-G solvation = -2661.958323 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -38.93907 -36.83874 -33.80297 -33.43421 -31.53965 -29.23046 -28.59242 -25.12736 -23.63390 -23.26531 -21.43118 -20.69995 -20.17888 -19.72983 -19.12127 -16.74807 -15.46177 -14.95999 -14.40187 -14.28599 -13.76895 -13.60044 -13.42019 -13.27044 -12.92219 -12.67651 -12.38725 -11.87968 -11.73607 -11.21950 -11.19874 -10.99189 -10.81464 -10.75495 -10.60419 -10.57636 -10.37712 -10.23361 -10.06929 -9.94785 -9.66705 -9.47689 -9.36012 -9.17401 -9.13926 -8.23544 -6.64854 -5.98208 -3.37649 3.47782 3.52156 3.67398 4.55328 4.94586 5.02017 5.09545 5.15164 5.27120 5.43596 5.48933 5.55729 5.66391 5.73802 5.87115 5.88447 5.95793 6.00179 6.02055 6.04750 6.11853 6.14139 6.23845 6.31192 6.35753 6.40898 6.44923 6.46733 6.53959 6.60145 6.63503 6.68707 6.73133 6.81627 6.93283 6.99540 7.05038 7.18976 7.28618 7.36937 8.19881 8.61655 9.18638 9.84033 10.32732 11.14556 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.015780 B = 0.009825 C = 0.007041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.953460 B = 2849.152847 C = 3975.736264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C -0.078 4.078 4 H 0.059 0.941 5 C -0.112 4.112 6 C -0.116 4.116 7 C -0.117 4.117 8 C -0.110 4.110 9 C -0.094 4.094 10 H 0.068 0.932 11 C 0.148 3.852 12 N -0.557 5.557 13 C -0.352 4.352 14 H 0.047 0.953 15 C -0.009 4.009 16 N -0.898 5.898 17 Si 1.058 2.942 18 H -0.294 1.294 19 H -0.291 1.291 20 H -0.285 1.285 21 C 0.129 3.871 22 C -0.198 4.198 23 C -0.225 4.225 24 H 0.048 0.952 25 H 0.049 0.951 26 H 0.048 0.952 27 H 0.075 0.925 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.051 0.949 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.049 0.951 35 H 0.075 0.925 36 H 0.045 0.955 37 H 0.024 0.976 38 H 0.080 0.920 39 H 0.270 0.730 40 H 0.083 0.917 41 H 0.098 0.902 42 H 0.071 0.929 43 H 0.070 0.930 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.506 8.352 4.574 11.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C -0.097 4.097 4 H 0.078 0.922 5 C -0.150 4.150 6 C -0.153 4.153 7 C -0.155 4.155 8 C -0.148 4.148 9 C -0.115 4.115 10 H 0.087 0.913 11 C 0.022 3.978 12 N -0.274 5.274 13 C -0.482 4.482 14 H 0.065 0.935 15 C -0.214 4.214 16 N -0.535 5.535 17 Si 0.888 3.112 18 H -0.221 1.221 19 H -0.217 1.217 20 H -0.211 1.211 21 C 0.020 3.980 22 C -0.237 4.237 23 C -0.266 4.266 24 H 0.067 0.933 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.093 0.907 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.094 0.906 36 H 0.063 0.937 37 H 0.042 0.958 38 H 0.098 0.902 39 H 0.081 0.919 40 H 0.100 0.900 41 H 0.117 0.883 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.893 6.714 4.935 10.206 hybrid contribution 0.590 1.687 -0.303 1.812 sum -5.303 8.400 4.632 10.961 Atomic orbital electron populations 1.21811 0.96916 1.00921 1.00999 1.21647 0.94606 0.96843 1.03075 1.21145 0.96526 0.95287 0.96707 0.92229 1.21613 0.99611 0.95452 0.98303 1.21515 0.96377 0.96917 1.00539 1.21535 0.95281 0.99580 0.99108 1.21591 1.02011 0.95657 0.95510 1.21689 0.92609 0.95593 1.01612 0.91315 1.21073 0.84137 0.99936 0.92653 1.43451 1.00832 1.17328 1.65785 1.19611 1.11381 0.85487 1.31684 0.93549 1.25903 0.98813 0.97908 0.98769 1.70746 1.40400 1.35342 1.07059 0.83655 0.76197 0.75759 0.75628 1.22093 1.21721 1.21112 1.21105 0.86738 0.93820 0.96329 1.23082 1.02153 1.00887 0.97618 1.23318 1.10230 0.96443 0.96590 0.93290 0.93199 0.93268 0.90692 0.92290 0.92365 0.92631 0.93068 0.92603 0.92479 0.93191 0.90594 0.93665 0.95769 0.90226 0.91907 0.89973 0.88337 0.91068 0.91173 0.89760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.67 37.16 0.36 -1.69 16 2 C -0.12 -2.07 5.19 -26.73 -0.14 -2.21 16 3 C -0.08 -1.25 1.71 -90.62 -0.16 -1.40 16 4 H 0.06 0.95 8.14 -51.92 -0.42 0.53 16 5 C -0.11 -1.58 4.96 -26.73 -0.13 -1.71 16 6 C -0.12 -1.53 5.92 -26.73 -0.16 -1.69 16 7 C -0.12 -1.72 5.92 -26.73 -0.16 -1.88 16 8 C -0.11 -1.89 4.77 -26.71 -0.13 -2.01 16 9 C -0.09 -1.78 1.93 -90.60 -0.17 -1.95 16 10 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 11 C 0.15 3.25 4.21 -4.04 -0.02 3.23 16 12 N -0.56 -13.33 2.32 -165.67 -0.38 -13.72 16 13 C -0.35 -9.43 7.81 -15.06 -0.12 -9.55 16 14 H 0.05 1.30 7.41 -52.49 -0.39 0.91 16 15 C -0.01 -0.25 4.75 -17.43 -0.08 -0.33 16 16 N -0.90 -25.87 12.42 55.49 0.69 -25.18 16 17 Si 1.06 24.93 30.00 -169.99 -5.10 19.84 16 18 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 20 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 21 C 0.13 2.77 5.11 -67.94 -0.35 2.42 16 22 C -0.20 -4.10 9.83 -26.70 -0.26 -4.36 16 23 C -0.22 -4.40 8.84 -26.70 -0.24 -4.64 16 24 H 0.05 0.64 8.14 -51.92 -0.42 0.22 16 25 H 0.05 0.62 6.56 -51.93 -0.34 0.28 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.07 1.44 6.07 -51.93 -0.32 1.13 16 28 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.06 0.71 6.56 -51.93 -0.34 0.36 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.08 1.43 5.31 -51.93 -0.28 1.15 16 36 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.02 0.51 8.04 -51.93 -0.42 0.10 16 38 H 0.08 1.95 3.85 -51.93 -0.20 1.75 16 39 H 0.27 7.92 7.49 -40.82 -0.31 7.61 16 40 H 0.08 1.65 8.10 -51.93 -0.42 1.23 16 41 H 0.10 2.29 7.03 -51.93 -0.37 1.92 16 42 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 43 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 44 H 0.08 1.79 7.95 -51.93 -0.41 1.37 16 LS Contribution 326.93 15.07 4.93 4.93 Total: -1.00 -27.17 326.93 -9.69 -36.87 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -8.08 Total: 5.05 kcal Atomic # 6 Polarization: -26.03 SS G_CDS: -1.75 Total: -27.78 kcal Atomic # 7 Polarization: -39.20 SS G_CDS: 0.31 Total: -38.89 kcal Atomic # 14 Polarization: 24.93 SS G_CDS: -5.10 Total: 19.84 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -27.17 -9.69 -36.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600116101.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.172 kcal (2) G-P(sol) polarization free energy of solvation -27.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds