Wall clock time and date at job start Mon Mar 30 2020 06:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47083 * 2 1 4 4 H 1.09008 * 109.46935 * 304.99955 * 3 2 1 5 5 C 1.52996 * 109.46803 * 64.99847 * 3 2 1 6 6 C 1.53009 * 109.46759 * 180.02562 * 5 3 2 7 7 C 1.53001 * 109.46942 * 299.99734 * 6 5 3 8 8 C 1.53000 * 109.46686 * 60.00393 * 7 6 5 9 9 C 1.52996 * 109.47273 * 185.00253 * 3 2 1 10 10 H 1.09003 * 109.46906 * 300.00210 * 9 3 2 11 11 C 1.53000 * 109.47048 * 59.99916 * 9 3 2 12 12 N 1.46506 * 109.46872 * 185.00044 * 11 9 3 13 13 C 1.36937 * 119.99921 * 89.99761 * 12 11 9 14 14 H 1.07999 * 120.00435 * 220.98527 * 13 12 11 15 15 C 1.38820 * 119.99845 * 40.98812 * 13 12 11 16 16 N 1.31618 * 119.99833 * 27.23910 * 15 13 12 17 17 Si 1.86793 * 119.99855 * 207.23998 * 15 13 12 18 18 H 1.48502 * 109.47466 * 270.00211 * 17 15 13 19 19 H 1.48508 * 109.47460 * 30.00089 * 17 15 13 20 20 H 1.48496 * 109.47208 * 149.99808 * 17 15 13 21 21 C 1.46498 * 120.00222 * 270.00220 * 12 11 9 22 22 C 1.52994 * 117.49863 * 194.49618 * 21 12 11 23 23 C 1.52991 * 117.49956 * 125.83347 * 21 12 11 24 24 H 1.09007 * 109.47083 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47039 * 299.99699 * 1 2 3 26 26 H 1.09002 * 109.47410 * 60.00178 * 1 2 3 27 27 H 1.08997 * 109.47039 * 240.00301 * 2 1 3 28 28 H 1.09002 * 109.47410 * 119.99822 * 2 1 3 29 29 H 1.08999 * 109.47516 * 60.00456 * 5 3 2 30 30 H 1.08997 * 109.47705 * 299.99648 * 5 3 2 31 31 H 1.09003 * 109.47013 * 180.02562 * 6 5 3 32 32 H 1.08994 * 109.47356 * 60.00087 * 6 5 3 33 33 H 1.08994 * 109.47383 * 300.00336 * 7 6 5 34 34 H 1.09003 * 109.46735 * 180.02562 * 7 6 5 35 35 H 1.09004 * 109.46762 * 179.97438 * 8 7 6 36 36 H 1.08994 * 109.47256 * 59.99865 * 8 7 6 37 37 H 1.08999 * 109.47464 * 65.00388 * 11 9 3 38 38 H 1.08998 * 109.47278 * 304.99821 * 11 9 3 39 39 H 0.97002 * 120.00004 * 4.25641 * 16 15 13 40 40 H 1.09000 * 115.54398 * 340.15908 * 21 12 11 41 41 H 1.08998 * 117.50123 * 359.97438 * 22 21 12 42 42 H 1.09000 * 117.49972 * 145.01723 * 22 21 12 43 43 H 1.09004 * 117.49721 * 214.97849 * 23 21 12 44 44 H 1.08998 * 117.50130 * 359.97438 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8419 5 6 1.6352 2.1265 1.3073 6 6 2.1446 3.5693 1.3070 7 6 3.6694 3.5716 1.1811 8 6 4.0742 2.8876 -0.1263 9 6 3.5648 1.4444 -0.1258 10 1 3.9994 0.9053 0.7160 11 6 3.9695 0.7604 -1.4331 12 7 5.4293 0.6554 -1.4977 13 6 6.0594 -0.4500 -0.9914 14 1 6.9766 -0.3400 -0.4320 15 6 5.5190 -1.7120 -1.1971 16 7 4.7714 -1.9432 -2.2554 17 14 5.8531 -3.0821 0.0279 18 1 7.0813 -3.8149 -0.3717 19 1 6.0419 -2.5008 1.3814 20 1 4.7017 -4.0196 0.0481 21 6 6.2152 1.7330 -2.1040 22 6 7.6746 1.4334 -2.4518 23 6 7.3410 2.3432 -1.2669 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 2.0698 1.5875 2.1492 30 1 0.5489 2.1253 1.3969 31 1 1.8566 4.0565 2.2386 32 1 1.7097 4.1080 0.4653 33 1 4.1044 3.0329 2.0228 34 1 4.0324 4.5994 1.1814 35 1 5.1605 2.8897 -0.2162 36 1 3.6392 3.4264 -0.9680 37 1 3.6098 1.3485 -2.2775 38 1 3.5314 -0.2369 -1.4722 39 1 4.6484 -1.2504 -2.9231 40 1 5.6654 2.3983 -2.7697 41 1 8.0502 0.4347 -2.2293 42 1 8.0852 1.9020 -3.3462 43 1 7.5324 3.4101 -1.3822 44 1 7.4969 1.9433 -0.2650 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600116101.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:20 Heat of formation + Delta-G solvation = -6.287515 kcal Electronic energy + Delta-G solvation = -20194.847960 eV Core-core repulsion = 17532.386920 eV Total energy + Delta-G solvation = -2662.461040 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.36731 -38.51221 -35.55661 -34.74635 -33.27107 -30.90183 -29.85004 -26.94929 -25.23430 -24.66066 -23.07544 -22.12414 -21.71259 -21.31936 -20.49737 -18.73631 -17.21982 -16.25406 -16.10628 -15.64571 -15.54665 -15.10659 -14.81764 -14.71816 -14.29257 -14.13986 -13.97918 -13.40680 -13.25466 -12.77396 -12.65542 -12.52096 -12.28070 -12.25894 -12.17976 -11.97506 -11.88034 -11.77932 -11.58623 -11.50653 -11.36569 -11.15448 -10.96593 -10.65471 -10.60654 -10.28383 -8.70556 -8.02744 -5.49656 1.52967 1.59694 1.77479 2.60179 3.13951 3.33427 3.47273 3.80760 3.93034 3.99153 4.20703 4.22641 4.30965 4.41292 4.42502 4.46065 4.53628 4.60117 4.69625 4.75023 4.75975 4.84889 4.86527 4.89043 4.95551 4.98324 5.07417 5.19126 5.20459 5.25815 5.27358 5.32255 5.38270 5.44950 5.46296 5.48476 5.52978 5.58277 5.74957 5.77949 6.01847 6.43972 7.19814 7.82741 8.29208 8.96993 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.015780 B = 0.009825 C = 0.007041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.953460 B = 2849.152847 C = 3975.736264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.123 4.123 3 C -0.072 4.072 4 H 0.067 0.933 5 C -0.108 4.108 6 C -0.111 4.111 7 C -0.114 4.114 8 C -0.105 4.105 9 C -0.083 4.083 10 H 0.033 0.967 11 C 0.151 3.849 12 N -0.572 5.572 13 C -0.346 4.346 14 H 0.029 0.971 15 C -0.054 4.054 16 N -0.921 5.921 17 Si 1.098 2.902 18 H -0.284 1.284 19 H -0.281 1.281 20 H -0.286 1.286 21 C 0.110 3.890 22 C -0.201 4.201 23 C -0.198 4.198 24 H 0.050 0.950 25 H 0.070 0.930 26 H 0.057 0.943 27 H 0.039 0.961 28 H 0.044 0.956 29 H 0.048 0.952 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.045 0.955 34 H 0.068 0.932 35 H 0.056 0.944 36 H 0.053 0.947 37 H 0.027 0.973 38 H 0.051 0.949 39 H 0.255 0.745 40 H 0.100 0.900 41 H 0.065 0.935 42 H 0.100 0.900 43 H 0.105 0.895 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.446 10.503 5.465 13.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.161 4.161 3 C -0.091 4.091 4 H 0.085 0.915 5 C -0.145 4.145 6 C -0.149 4.149 7 C -0.152 4.152 8 C -0.142 4.142 9 C -0.104 4.104 10 H 0.051 0.949 11 C 0.025 3.975 12 N -0.290 5.290 13 C -0.476 4.476 14 H 0.046 0.954 15 C -0.254 4.254 16 N -0.559 5.559 17 Si 0.924 3.076 18 H -0.210 1.210 19 H -0.207 1.207 20 H -0.212 1.212 21 C 0.002 3.998 22 C -0.240 4.240 23 C -0.239 4.239 24 H 0.069 0.931 25 H 0.088 0.912 26 H 0.076 0.924 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.064 0.936 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.045 0.955 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.118 0.882 41 H 0.084 0.916 42 H 0.119 0.881 43 H 0.123 0.877 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.820 8.891 5.829 12.631 hybrid contribution 0.943 1.062 -0.617 1.549 sum -5.877 9.953 5.212 12.680 Atomic orbital electron populations 1.21748 0.94133 1.01613 1.02371 1.21591 0.97039 0.96850 1.00615 1.21092 0.94188 0.95212 0.98567 0.91504 1.21585 1.00986 0.95799 0.96177 1.21503 0.94856 0.96293 1.02223 1.21506 0.96719 1.00040 0.96916 1.21502 1.00754 0.94455 0.97517 1.21482 0.94699 0.96151 0.98036 0.94859 1.21033 0.83102 0.98830 0.94495 1.43579 1.01662 1.17353 1.66424 1.19602 1.10727 0.86587 1.30712 0.95378 1.26968 0.98874 1.00031 0.99501 1.70859 1.42373 1.34917 1.07795 0.83098 0.76264 0.73840 0.74404 1.21040 1.20662 1.21225 1.21321 0.87091 0.93770 0.97614 1.23075 1.01529 0.99932 0.99469 1.23221 1.07786 0.97950 0.94925 0.93073 0.91153 0.92419 0.94226 0.93757 0.93286 0.90360 0.90775 0.91542 0.93604 0.91303 0.92519 0.92798 0.95474 0.93119 0.93502 0.88228 0.91592 0.88133 0.87678 0.91863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.66 9.67 71.98 0.70 -2.96 16 2 C -0.12 -4.16 5.19 30.59 0.16 -4.00 16 3 C -0.07 -2.25 1.71 -10.80 -0.02 -2.27 16 4 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 5 C -0.11 -2.76 4.96 30.60 0.15 -2.61 16 6 C -0.11 -2.54 5.92 30.60 0.18 -2.36 16 7 C -0.11 -3.08 5.92 30.59 0.18 -2.90 16 8 C -0.10 -3.46 4.77 30.61 0.15 -3.31 16 9 C -0.08 -3.17 1.93 -10.78 -0.02 -3.19 16 10 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 11 C 0.15 6.85 4.21 86.38 0.36 7.21 16 12 N -0.57 -28.16 2.32 -678.05 -1.57 -29.74 16 13 C -0.35 -19.21 7.81 84.04 0.66 -18.55 16 14 H 0.03 1.65 7.41 -2.91 -0.02 1.63 16 15 C -0.05 -3.06 4.75 84.86 0.40 -2.65 16 16 N -0.92 -55.10 12.42 21.65 0.27 -54.83 16 17 Si 1.10 51.77 30.00 68.60 2.06 53.82 16 18 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 19 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 20 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 21 C 0.11 4.69 5.11 44.99 0.23 4.92 16 22 C -0.20 -8.22 9.83 30.62 0.30 -7.92 16 23 C -0.20 -7.52 8.84 30.62 0.27 -7.25 16 24 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 25 H 0.07 1.53 6.56 -2.39 -0.02 1.52 16 26 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.04 1.60 6.07 -2.39 -0.01 1.59 16 28 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.08 1.68 6.56 -2.39 -0.02 1.67 16 31 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.06 2.08 5.31 -2.38 -0.01 2.07 16 36 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.03 1.18 8.04 -2.39 -0.02 1.16 16 38 H 0.05 2.63 3.85 -2.39 -0.01 2.62 16 39 H 0.26 15.67 7.49 -92.71 -0.69 14.98 16 40 H 0.10 3.86 8.10 -2.39 -0.02 3.84 16 41 H 0.07 3.13 7.03 -2.39 -0.02 3.12 16 42 H 0.10 3.48 8.14 -2.39 -0.02 3.46 16 43 H 0.10 3.27 8.14 -2.38 -0.02 3.25 16 44 H 0.06 2.68 7.95 -2.39 -0.02 2.66 16 Total: -1.00 -60.96 326.93 5.47 -55.49 By element: Atomic # 1 Polarization: 22.08 SS G_CDS: 1.01 Total: 23.09 kcal Atomic # 6 Polarization: -51.54 SS G_CDS: 3.70 Total: -47.84 kcal Atomic # 7 Polarization: -83.27 SS G_CDS: -1.30 Total: -84.57 kcal Atomic # 14 Polarization: 51.77 SS G_CDS: 2.06 Total: 53.82 kcal Total: -60.96 5.47 -55.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600116101.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.207 kcal (2) G-P(sol) polarization free energy of solvation -60.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds