Wall clock time and date at job start Mon Mar 30 2020 06:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46868 * 2 1 4 4 H 1.08997 * 109.47090 * 305.00267 * 3 2 1 5 5 C 1.53001 * 109.46906 * 65.00425 * 3 2 1 6 6 C 1.53003 * 109.46956 * 179.97438 * 5 3 2 7 7 C 1.52998 * 109.47221 * 299.99951 * 6 5 3 8 8 C 1.53001 * 109.47116 * 60.00147 * 7 6 5 9 9 C 1.53001 * 109.46906 * 299.99624 * 8 7 6 10 10 H 1.08998 * 109.47300 * 179.97438 * 9 8 7 11 11 C 1.52998 * 109.47288 * 300.00379 * 9 8 7 12 12 N 1.46498 * 109.47070 * 294.99766 * 11 9 8 13 13 C 1.36935 * 119.99813 * 90.00214 * 12 11 9 14 14 H 1.08004 * 119.99953 * 221.23892 * 13 12 11 15 15 C 1.38810 * 120.00280 * 41.23312 * 13 12 11 16 16 N 1.31619 * 119.99619 * 17.42139 * 15 13 12 17 17 Si 1.86798 * 120.00164 * 197.41989 * 15 13 12 18 18 H 1.48500 * 109.47325 * 60.00348 * 17 15 13 19 19 H 1.48500 * 109.47110 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47293 * 300.00252 * 17 15 13 21 21 C 1.46504 * 120.00104 * 270.00281 * 12 11 9 22 22 C 1.52996 * 117.49749 * 193.89745 * 21 12 11 23 23 C 1.52996 * 60.00072 * 252.51064 * 22 21 12 24 24 H 1.08996 * 109.47005 * 59.99839 * 1 2 3 25 25 H 1.09007 * 109.46663 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47180 * 299.99438 * 1 2 3 27 27 H 1.09007 * 109.47060 * 240.00158 * 2 1 3 28 28 H 1.09004 * 109.47317 * 120.00095 * 2 1 3 29 29 H 1.09000 * 109.47165 * 299.99628 * 5 3 2 30 30 H 1.09001 * 109.47170 * 59.99574 * 5 3 2 31 31 H 1.09005 * 109.46529 * 60.00233 * 6 5 3 32 32 H 1.08995 * 109.46807 * 179.97438 * 6 5 3 33 33 H 1.08996 * 109.47034 * 179.97438 * 7 6 5 34 34 H 1.08997 * 109.47319 * 299.99720 * 7 6 5 35 35 H 1.09000 * 109.47165 * 179.97438 * 8 7 6 36 36 H 1.08997 * 109.47375 * 59.99607 * 8 7 6 37 37 H 1.09003 * 109.46913 * 175.00095 * 11 9 8 38 38 H 1.08995 * 109.47316 * 55.00287 * 11 9 8 39 39 H 0.97006 * 119.99525 * 174.94378 * 16 15 13 40 40 H 1.08997 * 115.54815 * 339.60058 * 21 12 11 41 41 H 1.09004 * 117.49972 * 359.97438 * 22 21 12 42 42 H 1.09000 * 117.49922 * 145.02039 * 22 21 12 43 43 H 1.09007 * 117.49693 * 252.51289 * 23 22 21 44 44 H 1.09000 * 117.52244 * 107.48248 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 1.6352 2.1265 1.3074 6 6 2.1457 3.5688 1.3077 7 6 3.6705 3.5702 1.1822 8 6 4.0753 2.8863 -0.1252 9 6 3.5649 1.4439 -0.1255 10 1 3.8528 0.9567 -1.0570 11 6 4.1745 0.6869 1.0562 12 7 5.6246 0.5849 0.8749 13 6 6.4470 1.5608 1.3713 14 1 7.2866 1.9080 0.7873 15 6 6.2016 2.1038 2.6250 16 7 5.4178 1.4729 3.4734 17 14 6.9839 3.7299 3.1079 18 1 6.5441 4.7900 2.1655 19 1 6.5673 4.0893 4.4872 20 1 8.4625 3.6030 3.0550 21 6 6.1949 -0.5613 0.1625 22 6 7.7033 -0.7879 0.2819 23 6 7.1091 -0.2688 -1.0289 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0278 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 1.8934 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8900 29 1 0.5489 2.1252 1.3970 30 1 2.0699 1.5874 2.1492 31 1 1.7113 4.1081 0.4659 32 1 1.8570 4.0562 2.2389 33 1 4.0341 4.5977 1.1819 34 1 4.1049 3.0310 2.0240 35 1 5.1616 2.8876 -0.2149 36 1 3.6409 3.4255 -0.9670 37 1 3.7436 -0.3129 1.1084 38 1 3.9607 1.2234 1.9806 39 1 5.3044 1.8138 4.3745 40 1 5.5565 -1.4426 0.1027 41 1 8.2714 -0.0840 0.8901 42 1 8.0575 -1.8186 0.3007 43 1 7.0724 -0.9581 -1.8726 44 1 7.2859 0.7763 -1.2831 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600116104.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:23 Heat of formation + Delta-G solvation = 15.576816 kcal Electronic energy + Delta-G solvation = -20566.547599 eV Core-core repulsion = 17905.034667 eV Total energy + Delta-G solvation = -2661.512932 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.00482 -36.60345 -33.71045 -32.96734 -31.23871 -29.23512 -28.46689 -25.46004 -23.34714 -23.20141 -21.32240 -21.28765 -20.05185 -19.80375 -17.81031 -16.08096 -15.38123 -15.07301 -14.36456 -14.22865 -14.02847 -13.57429 -13.41239 -12.84496 -12.62217 -12.46379 -12.04613 -11.65036 -11.57282 -11.22240 -11.09682 -10.97657 -10.77222 -10.71415 -10.53095 -10.52095 -10.30755 -10.21421 -10.04278 -9.81976 -9.53153 -9.24127 -9.17754 -9.03594 -8.93664 -8.33507 -6.32955 -5.77263 -3.37786 3.34149 3.39777 3.43224 4.43630 5.03530 5.20770 5.23798 5.34647 5.38548 5.48087 5.59183 5.73015 5.79044 5.97993 6.02835 6.09590 6.15286 6.19574 6.24735 6.25444 6.26835 6.29007 6.39064 6.43164 6.51186 6.54228 6.60110 6.63274 6.69859 6.82818 6.86930 6.88257 7.03242 7.11198 7.13632 7.24350 7.25396 7.40707 7.50809 7.81994 7.90603 8.58291 9.23037 9.83263 10.43562 11.21105 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.017287 B = 0.010572 C = 0.007645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.340340 B = 2647.769832 C = 3661.630158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C -0.077 4.077 4 H 0.054 0.946 5 C -0.113 4.113 6 C -0.113 4.113 7 C -0.132 4.132 8 C -0.095 4.095 9 C -0.098 4.098 10 H 0.049 0.951 11 C 0.150 3.850 12 N -0.549 5.549 13 C -0.251 4.251 14 H 0.056 0.944 15 C 0.026 3.974 16 N -0.888 5.888 17 Si 0.882 3.118 18 H -0.277 1.277 19 H -0.289 1.289 20 H -0.282 1.282 21 C 0.131 3.869 22 C -0.198 4.198 23 C -0.229 4.229 24 H 0.047 0.953 25 H 0.046 0.954 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.048 0.952 30 H 0.071 0.929 31 H 0.046 0.954 32 H 0.048 0.952 33 H 0.039 0.961 34 H 0.101 0.899 35 H 0.078 0.922 36 H 0.028 0.972 37 H 0.023 0.977 38 H 0.106 0.894 39 H 0.256 0.744 40 H 0.084 0.916 41 H 0.097 0.903 42 H 0.070 0.930 43 H 0.069 0.931 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.730 -0.565 -5.313 8.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.096 4.096 4 H 0.072 0.928 5 C -0.151 4.151 6 C -0.151 4.151 7 C -0.170 4.170 8 C -0.132 4.132 9 C -0.119 4.119 10 H 0.068 0.932 11 C 0.025 3.975 12 N -0.264 5.264 13 C -0.381 4.381 14 H 0.073 0.927 15 C -0.174 4.174 16 N -0.530 5.530 17 Si 0.711 3.289 18 H -0.203 1.203 19 H -0.215 1.215 20 H -0.208 1.208 21 C 0.021 3.979 22 C -0.237 4.237 23 C -0.271 4.271 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.067 0.933 30 H 0.089 0.911 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.057 0.943 34 H 0.119 0.881 35 H 0.097 0.903 36 H 0.047 0.953 37 H 0.041 0.959 38 H 0.123 0.877 39 H 0.067 0.933 40 H 0.102 0.898 41 H 0.116 0.884 42 H 0.089 0.911 43 H 0.087 0.913 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.867 -0.472 -5.098 8.566 hybrid contribution 0.557 0.905 0.177 1.077 sum -6.310 0.433 -4.921 8.014 Atomic orbital electron populations 1.21825 0.96895 1.00702 1.01392 1.21618 0.94710 0.97452 1.02013 1.21134 0.96656 0.94646 0.97136 0.92795 1.21614 0.98884 0.96065 0.98487 1.21490 0.97316 0.96418 0.99863 1.21757 0.94244 0.99645 1.01308 1.21315 1.02085 0.94588 0.95253 1.21731 0.92318 0.97101 1.00725 0.93235 1.21209 0.81951 0.96582 0.97763 1.43367 1.01472 1.19639 1.61972 1.18747 1.09996 1.11766 0.97563 0.92670 1.25163 0.98379 0.98507 0.95351 1.69883 1.39944 1.38647 1.04534 0.86722 0.79440 0.85060 0.77661 1.20266 1.21458 1.20837 1.21107 0.89492 0.91659 0.95617 1.23041 0.99994 1.00021 1.00679 1.23343 1.11035 1.00633 0.92041 0.93412 0.93519 0.92674 0.92616 0.91446 0.93308 0.91069 0.93555 0.93346 0.94262 0.88062 0.90316 0.95337 0.95912 0.87675 0.93335 0.89836 0.88420 0.91119 0.91255 0.89894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.67 37.16 0.36 -1.53 16 2 C -0.12 -1.79 4.90 -26.73 -0.13 -1.92 16 3 C -0.08 -1.26 1.97 -90.62 -0.18 -1.44 16 4 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 5 C -0.11 -1.88 4.69 -26.73 -0.13 -2.01 16 6 C -0.11 -1.95 5.92 -26.73 -0.16 -2.11 16 7 C -0.13 -2.66 5.64 -26.73 -0.15 -2.82 16 8 C -0.10 -1.90 5.00 -26.73 -0.13 -2.04 16 9 C -0.10 -1.89 2.40 -90.62 -0.22 -2.10 16 10 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 11 C 0.15 3.31 3.92 -4.04 -0.02 3.29 16 12 N -0.55 -12.99 2.64 -165.67 -0.44 -13.43 16 13 C -0.25 -6.42 5.88 -15.06 -0.09 -6.51 16 14 H 0.06 1.46 7.37 -52.48 -0.39 1.08 16 15 C 0.03 0.68 3.26 -17.43 -0.06 0.62 16 16 N -0.89 -23.98 11.16 55.49 0.62 -23.36 16 17 Si 0.88 20.88 29.30 -169.99 -4.98 15.90 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 C 0.13 2.81 6.61 -67.93 -0.45 2.36 16 22 C -0.20 -4.04 9.83 -26.73 -0.26 -4.30 16 23 C -0.23 -4.46 10.11 -26.73 -0.27 -4.73 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.05 0.68 6.56 -51.93 -0.34 0.34 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.07 1.08 6.59 -51.93 -0.34 0.74 16 29 H 0.05 0.71 6.57 -51.93 -0.34 0.37 16 30 H 0.07 1.33 6.54 -51.93 -0.34 0.99 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.10 2.33 3.60 -51.93 -0.19 2.14 16 35 H 0.08 1.77 6.35 -51.93 -0.33 1.45 16 36 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.02 0.49 6.18 -51.93 -0.32 0.17 16 38 H 0.11 2.55 2.55 -51.93 -0.13 2.41 16 39 H 0.26 6.81 8.32 -40.82 -0.34 6.47 16 40 H 0.08 1.69 8.10 -51.93 -0.42 1.27 16 41 H 0.10 2.20 7.02 -51.93 -0.36 1.83 16 42 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 43 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.08 1.72 7.99 -51.93 -0.42 1.30 16 LS Contribution 317.51 15.07 4.78 4.78 Total: -1.00 -25.68 317.51 -9.60 -35.28 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -7.71 Total: 6.06 kcal Atomic # 6 Polarization: -23.35 SS G_CDS: -1.88 Total: -25.23 kcal Atomic # 7 Polarization: -36.98 SS G_CDS: 0.18 Total: -36.80 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.98 Total: 15.90 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -25.68 -9.60 -35.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600116104.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.856 kcal (2) G-P(sol) polarization free energy of solvation -25.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds