Wall clock time and date at job start Mon Mar 30 2020 06:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46868 * 2 1 4 4 H 1.08997 * 109.47090 * 305.00267 * 3 2 1 5 5 C 1.53001 * 109.46906 * 65.00425 * 3 2 1 6 6 C 1.53003 * 109.46956 * 179.97438 * 5 3 2 7 7 C 1.52998 * 109.47221 * 299.99951 * 6 5 3 8 8 C 1.53001 * 109.47116 * 60.00147 * 7 6 5 9 9 C 1.53001 * 109.46906 * 299.99624 * 8 7 6 10 10 H 1.08998 * 109.47300 * 179.97438 * 9 8 7 11 11 C 1.52998 * 109.47288 * 300.00379 * 9 8 7 12 12 N 1.46498 * 109.47070 * 294.99766 * 11 9 8 13 13 C 1.36935 * 119.99813 * 90.00214 * 12 11 9 14 14 H 1.08004 * 119.99953 * 221.23892 * 13 12 11 15 15 C 1.38810 * 120.00280 * 41.23312 * 13 12 11 16 16 N 1.31619 * 119.99619 * 17.42139 * 15 13 12 17 17 Si 1.86798 * 120.00164 * 197.41989 * 15 13 12 18 18 H 1.48500 * 109.47325 * 60.00348 * 17 15 13 19 19 H 1.48500 * 109.47110 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47293 * 300.00252 * 17 15 13 21 21 C 1.46504 * 120.00104 * 270.00281 * 12 11 9 22 22 C 1.52996 * 117.49749 * 193.89745 * 21 12 11 23 23 C 1.52996 * 60.00072 * 252.51064 * 22 21 12 24 24 H 1.08996 * 109.47005 * 59.99839 * 1 2 3 25 25 H 1.09007 * 109.46663 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47180 * 299.99438 * 1 2 3 27 27 H 1.09007 * 109.47060 * 240.00158 * 2 1 3 28 28 H 1.09004 * 109.47317 * 120.00095 * 2 1 3 29 29 H 1.09000 * 109.47165 * 299.99628 * 5 3 2 30 30 H 1.09001 * 109.47170 * 59.99574 * 5 3 2 31 31 H 1.09005 * 109.46529 * 60.00233 * 6 5 3 32 32 H 1.08995 * 109.46807 * 179.97438 * 6 5 3 33 33 H 1.08996 * 109.47034 * 179.97438 * 7 6 5 34 34 H 1.08997 * 109.47319 * 299.99720 * 7 6 5 35 35 H 1.09000 * 109.47165 * 179.97438 * 8 7 6 36 36 H 1.08997 * 109.47375 * 59.99607 * 8 7 6 37 37 H 1.09003 * 109.46913 * 175.00095 * 11 9 8 38 38 H 1.08995 * 109.47316 * 55.00287 * 11 9 8 39 39 H 0.97006 * 119.99525 * 174.94378 * 16 15 13 40 40 H 1.08997 * 115.54815 * 339.60058 * 21 12 11 41 41 H 1.09004 * 117.49972 * 359.97438 * 22 21 12 42 42 H 1.09000 * 117.49922 * 145.02039 * 22 21 12 43 43 H 1.09007 * 117.49693 * 252.51289 * 23 22 21 44 44 H 1.09000 * 117.52244 * 107.48248 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 1.6352 2.1265 1.3074 6 6 2.1457 3.5688 1.3077 7 6 3.6705 3.5702 1.1822 8 6 4.0753 2.8863 -0.1252 9 6 3.5649 1.4439 -0.1255 10 1 3.8528 0.9567 -1.0570 11 6 4.1745 0.6869 1.0562 12 7 5.6246 0.5849 0.8749 13 6 6.4470 1.5608 1.3713 14 1 7.2866 1.9080 0.7873 15 6 6.2016 2.1038 2.6250 16 7 5.4178 1.4729 3.4734 17 14 6.9839 3.7299 3.1079 18 1 6.5441 4.7900 2.1655 19 1 6.5673 4.0893 4.4872 20 1 8.4625 3.6030 3.0550 21 6 6.1949 -0.5613 0.1625 22 6 7.7033 -0.7879 0.2819 23 6 7.1091 -0.2688 -1.0289 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0278 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 1.8934 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8900 29 1 0.5489 2.1252 1.3970 30 1 2.0699 1.5874 2.1492 31 1 1.7113 4.1081 0.4659 32 1 1.8570 4.0562 2.2389 33 1 4.0341 4.5977 1.1819 34 1 4.1049 3.0310 2.0240 35 1 5.1616 2.8876 -0.2149 36 1 3.6409 3.4255 -0.9670 37 1 3.7436 -0.3129 1.1084 38 1 3.9607 1.2234 1.9806 39 1 5.3044 1.8138 4.3745 40 1 5.5565 -1.4426 0.1027 41 1 8.2714 -0.0840 0.8901 42 1 8.0575 -1.8186 0.3007 43 1 7.0724 -0.9581 -1.8726 44 1 7.2859 0.7763 -1.2831 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600116104.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:22 Heat of formation + Delta-G solvation = 5.136073 kcal Electronic energy + Delta-G solvation = -20567.000344 eV Core-core repulsion = 17905.034667 eV Total energy + Delta-G solvation = -2661.965676 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.51677 -38.26924 -35.29555 -34.47504 -33.00250 -30.89190 -29.81248 -27.27837 -25.00515 -24.58628 -22.91401 -22.78124 -21.63968 -21.34918 -19.40140 -17.90316 -17.18024 -16.63699 -16.05656 -15.77683 -15.50312 -15.13730 -14.87312 -14.25039 -14.12986 -13.97113 -13.47283 -13.25114 -13.16233 -12.91740 -12.78364 -12.60862 -12.29954 -12.19789 -12.12834 -12.08279 -11.88923 -11.75874 -11.68092 -11.45883 -11.10149 -10.84302 -10.72152 -10.58645 -10.50677 -10.25116 -8.25016 -7.72441 -5.37422 1.40709 1.44627 1.48408 2.48907 3.23538 3.49997 3.60887 3.95184 3.98854 4.08002 4.33691 4.36506 4.45573 4.53069 4.57229 4.58321 4.66286 4.70697 4.77534 4.85457 4.88304 4.96762 4.98057 5.02711 5.08957 5.13369 5.21462 5.25413 5.28624 5.35519 5.37392 5.40475 5.54415 5.57080 5.58220 5.65038 5.67353 5.75377 5.82941 5.91609 6.13916 6.59124 7.28090 7.96372 8.49742 9.19860 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.017287 B = 0.010572 C = 0.007645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.340340 B = 2647.769832 C = 3661.630158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.117 4.117 3 C -0.071 4.071 4 H 0.070 0.930 5 C -0.108 4.108 6 C -0.109 4.109 7 C -0.134 4.134 8 C -0.091 4.091 9 C -0.089 4.089 10 H 0.045 0.955 11 C 0.154 3.846 12 N -0.564 5.564 13 C -0.243 4.243 14 H 0.040 0.960 15 C -0.003 4.003 16 N -0.910 5.910 17 Si 0.920 3.080 18 H -0.274 1.274 19 H -0.291 1.291 20 H -0.284 1.284 21 C 0.107 3.893 22 C -0.198 4.198 23 C -0.206 4.206 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.048 0.952 29 H 0.075 0.925 30 H 0.043 0.957 31 H 0.067 0.933 32 H 0.053 0.947 33 H 0.033 0.967 34 H 0.072 0.928 35 H 0.046 0.954 36 H 0.048 0.952 37 H 0.019 0.981 38 H 0.086 0.914 39 H 0.251 0.749 40 H 0.098 0.902 41 H 0.069 0.931 42 H 0.098 0.902 43 H 0.101 0.899 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.198 -0.809 -6.820 10.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.155 4.155 3 C -0.090 4.090 4 H 0.089 0.911 5 C -0.146 4.146 6 C -0.147 4.147 7 C -0.172 4.172 8 C -0.128 4.128 9 C -0.109 4.109 10 H 0.063 0.937 11 C 0.029 3.971 12 N -0.281 5.281 13 C -0.374 4.374 14 H 0.057 0.943 15 C -0.201 4.201 16 N -0.554 5.554 17 Si 0.749 3.251 18 H -0.200 1.200 19 H -0.217 1.217 20 H -0.210 1.210 21 C -0.002 4.002 22 C -0.237 4.237 23 C -0.247 4.247 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.067 0.933 29 H 0.094 0.906 30 H 0.062 0.938 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.052 0.948 34 H 0.090 0.910 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.037 0.963 38 H 0.103 0.897 39 H 0.061 0.939 40 H 0.116 0.884 41 H 0.088 0.912 42 H 0.116 0.884 43 H 0.120 0.880 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.329 -0.721 -6.625 10.666 hybrid contribution 1.066 0.946 0.602 1.547 sum -7.263 0.225 -6.023 9.438 Atomic orbital electron populations 1.21776 0.94648 1.01801 1.02052 1.21560 0.96641 0.96047 1.01250 1.21091 0.94282 0.96017 0.97574 0.91127 1.21567 1.00278 0.95241 0.97479 1.21462 0.94910 0.97198 1.01085 1.21715 0.96583 0.98742 1.00148 1.21234 1.00143 0.95496 0.95969 1.21574 0.94446 0.95926 0.98997 0.93680 1.21136 0.81350 0.96423 0.98170 1.43527 1.02037 1.20146 1.62396 1.18673 1.09503 1.12064 0.97128 0.94271 1.25474 0.99054 1.00162 0.95390 1.69977 1.41286 1.39657 1.04472 0.86113 0.78644 0.83152 0.77170 1.20017 1.21715 1.21008 1.21355 0.90289 0.91693 0.96897 1.23024 0.98810 1.00911 1.00931 1.23268 1.08689 1.00371 0.92326 0.92153 0.92333 0.92525 0.92353 0.93287 0.90632 0.93833 0.91420 0.92791 0.94784 0.90991 0.93570 0.93358 0.96260 0.89682 0.93919 0.88444 0.91192 0.88414 0.88041 0.91598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.18 9.67 71.98 0.70 -2.48 16 2 C -0.12 -3.26 4.90 30.60 0.15 -3.11 16 3 C -0.07 -2.17 1.97 -10.79 -0.02 -2.19 16 4 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 5 C -0.11 -3.41 4.69 30.60 0.14 -3.26 16 6 C -0.11 -3.55 5.92 30.59 0.18 -3.37 16 7 C -0.13 -5.39 5.64 30.59 0.17 -5.21 16 8 C -0.09 -3.60 5.00 30.60 0.15 -3.45 16 9 C -0.09 -3.36 2.40 -10.79 -0.03 -3.38 16 10 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 11 C 0.15 6.86 3.92 86.38 0.34 7.20 16 12 N -0.56 -27.10 2.64 -678.05 -1.79 -28.88 16 13 C -0.24 -12.75 5.88 84.03 0.49 -12.26 16 14 H 0.04 2.16 7.37 -2.91 -0.02 2.14 16 15 C 0.00 -0.16 3.26 84.86 0.28 0.12 16 16 N -0.91 -50.54 11.16 21.65 0.24 -50.30 16 17 Si 0.92 43.79 29.30 68.60 2.01 45.80 16 18 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 19 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 20 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 21 C 0.11 4.51 6.61 44.99 0.30 4.81 16 22 C -0.20 -7.90 9.83 30.59 0.30 -7.60 16 23 C -0.21 -7.71 10.11 30.59 0.31 -7.40 16 24 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 26 H 0.06 1.22 6.56 -2.39 -0.02 1.20 16 27 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 28 H 0.05 1.53 6.59 -2.39 -0.02 1.52 16 29 H 0.08 1.98 6.57 -2.39 -0.02 1.97 16 30 H 0.04 1.62 6.54 -2.39 -0.02 1.60 16 31 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 32 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.07 3.37 3.60 -2.39 -0.01 3.36 16 35 H 0.05 2.11 6.35 -2.39 -0.02 2.09 16 36 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.02 0.85 6.18 -2.39 -0.01 0.83 16 38 H 0.09 4.23 2.55 -2.39 -0.01 4.22 16 39 H 0.25 13.74 8.32 -92.70 -0.77 12.97 16 40 H 0.10 3.81 8.10 -2.39 -0.02 3.79 16 41 H 0.07 3.19 7.02 -2.39 -0.02 3.17 16 42 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16 43 H 0.10 3.16 8.14 -2.38 -0.02 3.14 16 44 H 0.07 2.70 7.99 -2.39 -0.02 2.68 16 Total: -1.00 -55.76 317.51 4.88 -50.88 By element: Atomic # 1 Polarization: 23.15 SS G_CDS: 0.95 Total: 24.10 kcal Atomic # 6 Polarization: -45.06 SS G_CDS: 3.47 Total: -41.60 kcal Atomic # 7 Polarization: -77.64 SS G_CDS: -1.55 Total: -79.18 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.01 Total: 45.80 kcal Total: -55.76 4.88 -50.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600116104.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.017 kcal (2) G-P(sol) polarization free energy of solvation -55.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds