Wall clock time and date at job start Mon Mar 30 2020 06:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47289 * 2 1 4 4 H 1.08996 * 109.47072 * 54.99864 * 3 2 1 5 5 C 1.53003 * 109.46864 * 294.99765 * 3 2 1 6 6 C 1.53000 * 109.46864 * 179.97438 * 5 3 2 7 7 C 1.53003 * 109.47158 * 60.00315 * 6 5 3 8 8 C 1.52994 * 109.47041 * 300.00036 * 7 6 5 9 9 C 1.53002 * 109.47539 * 59.99982 * 8 7 6 10 10 H 1.08997 * 109.47140 * 59.99311 * 9 8 7 11 11 C 1.52993 * 109.47272 * 180.02562 * 9 8 7 12 12 N 1.46897 * 109.47082 * 294.99643 * 11 9 8 13 13 C 1.47965 * 111.00070 * 170.00233 * 12 11 9 14 14 C 1.53939 * 86.17880 * 137.58385 * 13 12 11 15 15 C 1.50703 * 113.72976 * 221.81422 * 14 13 12 16 16 H 1.07991 * 120.00521 * 358.10621 * 15 14 13 17 17 C 1.37886 * 119.99650 * 178.10228 * 15 14 13 18 18 N 1.31507 * 119.99732 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 119.99872 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.47120 * 90.00190 * 19 17 15 21 21 H 1.48508 * 109.47081 * 209.99922 * 19 17 15 22 22 H 1.48496 * 109.47285 * 330.00006 * 19 17 15 23 23 C 1.47960 * 111.00044 * 269.36222 * 12 11 9 24 24 H 1.08996 * 109.46941 * 300.00395 * 1 2 3 25 25 H 1.09002 * 109.46947 * 59.99538 * 1 2 3 26 26 H 1.08996 * 109.47275 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46675 * 240.00019 * 2 1 3 28 28 H 1.09000 * 109.46804 * 119.99930 * 2 1 3 29 29 H 1.08997 * 109.47150 * 60.00263 * 5 3 2 30 30 H 1.08996 * 109.47357 * 299.99924 * 5 3 2 31 31 H 1.09002 * 109.47730 * 300.00255 * 6 5 3 32 32 H 1.09008 * 109.47141 * 180.02562 * 6 5 3 33 33 H 1.08996 * 109.47138 * 179.97438 * 7 6 5 34 34 H 1.09000 * 109.47012 * 60.00342 * 7 6 5 35 35 H 1.09009 * 109.47265 * 299.99879 * 8 7 6 36 36 H 1.08997 * 109.47215 * 179.97438 * 8 7 6 37 37 H 1.09002 * 109.47079 * 174.99987 * 11 9 8 38 38 H 1.08999 * 109.47476 * 55.00129 * 11 9 8 39 39 H 1.08999 * 113.75581 * 23.26965 * 13 12 11 40 40 H 1.08999 * 113.75871 * 251.90170 * 13 12 11 41 41 H 1.09002 * 113.73278 * 90.63886 * 14 13 12 42 42 H 0.97003 * 119.99762 * 179.97438 * 18 17 15 43 43 H 1.09001 * 113.75748 * 108.09640 * 23 12 11 44 44 H 1.09002 * 113.76361 * 336.73597 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6353 2.1265 -1.3074 6 6 2.1448 3.5691 -1.3071 7 6 3.6697 3.5715 -1.1811 8 6 4.0744 2.8875 0.1261 9 6 3.5649 1.4448 0.1260 10 1 3.9998 0.9060 -0.7159 11 6 3.9691 0.7610 1.4335 12 7 5.4329 0.6561 1.4991 13 6 5.8737 0.2213 2.8430 14 6 6.8664 -0.6969 2.1074 15 6 6.9799 -2.0736 2.7099 16 1 6.4159 -2.3233 3.5963 17 6 7.8039 -3.0144 2.1292 18 7 7.9025 -4.2159 2.6546 19 14 8.7788 -2.5826 0.5954 20 1 10.1002 -2.0304 0.9880 21 1 8.9769 -3.8043 -0.2254 22 1 8.0344 -1.5702 -0.1957 23 6 5.9000 -0.6190 0.9117 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 0.5490 2.1252 -1.3970 30 1 2.0699 1.5874 -2.1492 31 1 1.7099 4.1080 -0.4654 32 1 1.8561 4.0566 -2.2384 33 1 4.0326 4.5992 -1.1814 34 1 4.1046 3.0328 -2.0230 35 1 3.6394 3.4263 0.9680 36 1 5.1607 2.8887 0.2157 37 1 3.5313 -0.2365 1.4724 38 1 3.6088 1.3490 2.2776 39 1 5.1093 -0.3174 3.4029 40 1 6.3524 1.0093 3.4244 41 1 7.8352 -0.2342 1.9193 42 1 8.4819 -4.8778 2.2459 43 1 6.3997 -0.5024 -0.0500 44 1 5.1433 -1.4036 0.9067 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600181380.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:08 Heat of formation + Delta-G solvation = -5.056676 kcal Electronic energy + Delta-G solvation = -19409.239773 eV Core-core repulsion = 16746.832106 eV Total energy + Delta-G solvation = -2662.407667 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.64444 -38.22454 -33.92475 -32.92242 -31.89783 -29.13881 -28.44722 -25.40975 -25.13707 -23.90265 -22.54154 -20.60534 -20.40957 -19.57164 -18.55375 -16.97982 -15.49290 -15.16259 -14.82184 -14.59575 -14.23331 -13.95018 -13.70798 -13.37800 -13.18556 -13.11440 -12.66089 -12.28704 -11.91761 -11.80437 -11.57772 -11.42830 -11.40485 -11.02555 -10.99679 -10.82625 -10.70822 -10.38158 -10.15610 -10.07186 -9.95685 -9.81387 -9.59757 -9.27612 -9.11348 -8.54933 -7.93388 -6.08890 -4.08733 3.30545 3.38929 3.43549 4.43628 4.59740 4.69336 4.75616 4.95030 5.09878 5.13599 5.20802 5.27149 5.38430 5.43074 5.57705 5.60512 5.65234 5.70202 5.75276 5.78286 5.85415 5.95644 6.02953 6.04291 6.08818 6.09175 6.17246 6.21831 6.27005 6.34991 6.38147 6.42321 6.44637 6.51482 6.53416 6.67175 6.73106 6.78969 7.13971 7.40898 7.72894 7.93471 8.50731 8.94251 9.54413 11.03849 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.026282 B = 0.005375 C = 0.005023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.102750 B = 5207.989656 C = 5573.052286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C -0.081 4.081 4 H 0.066 0.934 5 C -0.113 4.113 6 C -0.118 4.118 7 C -0.120 4.120 8 C -0.104 4.104 9 C -0.071 4.071 10 H 0.067 0.933 11 C 0.023 3.977 12 N -0.488 5.488 13 C 0.012 3.988 14 C -0.002 4.002 15 C -0.513 4.513 16 H 0.072 0.928 17 C 0.073 3.927 18 N -0.901 5.901 19 Si 0.874 3.126 20 H -0.278 1.278 21 H -0.290 1.290 22 H -0.254 1.254 23 C -0.005 4.005 24 H 0.051 0.949 25 H 0.053 0.947 26 H 0.050 0.950 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.053 0.947 36 H 0.075 0.925 37 H 0.044 0.956 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.067 0.933 41 H 0.051 0.949 42 H 0.264 0.736 43 H 0.065 0.935 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.532 13.136 -7.607 19.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.100 4.100 4 H 0.085 0.915 5 C -0.150 4.150 6 C -0.156 4.156 7 C -0.158 4.158 8 C -0.142 4.142 9 C -0.089 4.089 10 H 0.085 0.915 11 C -0.105 4.105 12 N -0.210 5.210 13 C -0.116 4.116 14 C -0.022 4.022 15 C -0.550 4.550 16 H 0.091 0.909 17 C -0.129 4.129 18 N -0.538 5.538 19 Si 0.701 3.299 20 H -0.204 1.204 21 H -0.216 1.216 22 H -0.178 1.178 23 C -0.134 4.134 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.093 0.907 37 H 0.063 0.937 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.069 0.931 42 H 0.073 0.927 43 H 0.083 0.917 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.241 13.586 -7.894 19.918 hybrid contribution 0.097 -0.736 -0.474 0.881 sum -12.144 12.850 -8.368 19.560 Atomic orbital electron populations 1.21809 0.96300 1.01280 1.01462 1.21680 0.95409 0.96748 1.02506 1.21190 0.95605 0.95559 0.97635 0.91544 1.21606 1.00092 0.95611 0.97712 1.21534 0.96257 0.96743 1.01044 1.21560 0.95400 1.00117 0.98697 1.21452 1.01876 0.94637 0.96214 1.21038 0.93598 0.96307 0.98005 0.91458 1.22734 0.91409 0.99297 0.97102 1.68384 1.09970 1.32699 1.09926 1.23834 0.98747 0.97537 0.91522 1.20738 0.93713 0.95760 0.91965 1.20993 1.26834 0.94080 1.13138 0.90946 1.25004 0.96058 0.94769 0.97070 1.69915 1.38828 1.04450 1.40651 0.86923 0.80896 0.78289 0.83829 1.20370 1.21591 1.17844 1.24459 0.99607 0.89402 0.99921 0.93008 0.92824 0.93052 0.92114 0.91372 0.92197 0.92212 0.92333 0.92664 0.92580 0.92311 0.92846 0.90671 0.93740 0.92195 0.92232 0.91413 0.93115 0.92670 0.91681 0.91883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.67 37.16 0.36 -1.14 16 2 C -0.13 -1.47 5.19 -26.73 -0.14 -1.61 16 3 C -0.08 -0.94 1.71 -90.62 -0.16 -1.09 16 4 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 5 C -0.11 -1.16 4.96 -26.73 -0.13 -1.29 16 6 C -0.12 -1.17 5.92 -26.73 -0.16 -1.33 16 7 C -0.12 -1.33 5.92 -26.73 -0.16 -1.49 16 8 C -0.10 -1.35 5.09 -26.73 -0.14 -1.49 16 9 C -0.07 -0.97 1.91 -90.62 -0.17 -1.14 16 10 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 11 C 0.02 0.37 3.97 -3.83 -0.02 0.36 16 12 N -0.49 -9.20 5.61 -238.34 -1.34 -10.54 16 13 C 0.01 0.25 7.50 -2.76 -0.02 0.23 16 14 C 0.00 -0.06 2.88 -90.84 -0.26 -0.32 16 15 C -0.51 -14.25 9.33 -34.44 -0.32 -14.57 16 16 H 0.07 2.19 8.06 -52.49 -0.42 1.76 16 17 C 0.07 2.08 5.47 -17.82 -0.10 1.99 16 18 N -0.90 -27.40 13.96 55.43 0.77 -26.62 16 19 Si 0.87 21.31 27.09 -169.99 -4.60 16.70 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 22 H -0.25 -5.86 5.28 56.52 0.30 -5.57 16 23 C 0.00 -0.11 6.60 -2.77 -0.02 -0.12 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.05 0.49 6.56 -51.93 -0.34 0.14 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.07 0.88 6.07 -51.93 -0.32 0.57 16 29 H 0.06 0.56 6.56 -51.93 -0.34 0.22 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.49 8.14 -51.92 -0.42 0.07 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.05 0.68 8.14 -51.92 -0.42 0.25 16 36 H 0.07 1.11 7.75 -51.93 -0.40 0.71 16 37 H 0.04 0.75 5.31 -51.93 -0.28 0.47 16 38 H 0.06 0.92 8.08 -51.93 -0.42 0.50 16 39 H 0.06 1.22 7.87 -51.93 -0.41 0.81 16 40 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 41 H 0.05 1.21 7.20 -51.93 -0.37 0.84 16 42 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 43 H 0.06 1.39 6.83 -51.93 -0.35 1.04 16 44 H 0.06 1.39 7.43 -51.93 -0.39 1.00 16 LS Contribution 326.05 15.07 4.91 4.91 Total: -1.00 -28.51 326.05 -10.04 -38.55 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -8.35 Total: 0.02 kcal Atomic # 6 Polarization: -21.59 SS G_CDS: -1.43 Total: -23.02 kcal Atomic # 7 Polarization: -36.60 SS G_CDS: -0.56 Total: -37.16 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.60 Total: 16.70 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -28.51 -10.04 -38.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600181380.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.494 kcal (2) G-P(sol) polarization free energy of solvation -28.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds