Wall clock time and date at job start Mon Mar 30 2020 06:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47289 * 2 1 4 4 H 1.08996 * 109.47072 * 54.99864 * 3 2 1 5 5 C 1.53003 * 109.46864 * 294.99765 * 3 2 1 6 6 C 1.53000 * 109.46864 * 179.97438 * 5 3 2 7 7 C 1.53003 * 109.47158 * 60.00315 * 6 5 3 8 8 C 1.52994 * 109.47041 * 300.00036 * 7 6 5 9 9 C 1.53002 * 109.47539 * 59.99982 * 8 7 6 10 10 H 1.08997 * 109.47140 * 59.99311 * 9 8 7 11 11 C 1.52993 * 109.47272 * 180.02562 * 9 8 7 12 12 N 1.46897 * 109.47082 * 294.99643 * 11 9 8 13 13 C 1.47965 * 111.00070 * 170.00233 * 12 11 9 14 14 C 1.53939 * 86.17880 * 137.58385 * 13 12 11 15 15 C 1.50703 * 113.72976 * 221.81422 * 14 13 12 16 16 H 1.07991 * 120.00521 * 358.10621 * 15 14 13 17 17 C 1.37886 * 119.99650 * 178.10228 * 15 14 13 18 18 N 1.31507 * 119.99732 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 119.99872 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.47120 * 90.00190 * 19 17 15 21 21 H 1.48508 * 109.47081 * 209.99922 * 19 17 15 22 22 H 1.48496 * 109.47285 * 330.00006 * 19 17 15 23 23 C 1.47960 * 111.00044 * 269.36222 * 12 11 9 24 24 H 1.08996 * 109.46941 * 300.00395 * 1 2 3 25 25 H 1.09002 * 109.46947 * 59.99538 * 1 2 3 26 26 H 1.08996 * 109.47275 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46675 * 240.00019 * 2 1 3 28 28 H 1.09000 * 109.46804 * 119.99930 * 2 1 3 29 29 H 1.08997 * 109.47150 * 60.00263 * 5 3 2 30 30 H 1.08996 * 109.47357 * 299.99924 * 5 3 2 31 31 H 1.09002 * 109.47730 * 300.00255 * 6 5 3 32 32 H 1.09008 * 109.47141 * 180.02562 * 6 5 3 33 33 H 1.08996 * 109.47138 * 179.97438 * 7 6 5 34 34 H 1.09000 * 109.47012 * 60.00342 * 7 6 5 35 35 H 1.09009 * 109.47265 * 299.99879 * 8 7 6 36 36 H 1.08997 * 109.47215 * 179.97438 * 8 7 6 37 37 H 1.09002 * 109.47079 * 174.99987 * 11 9 8 38 38 H 1.08999 * 109.47476 * 55.00129 * 11 9 8 39 39 H 1.08999 * 113.75581 * 23.26965 * 13 12 11 40 40 H 1.08999 * 113.75871 * 251.90170 * 13 12 11 41 41 H 1.09002 * 113.73278 * 90.63886 * 14 13 12 42 42 H 0.97003 * 119.99762 * 179.97438 * 18 17 15 43 43 H 1.09001 * 113.75748 * 108.09640 * 23 12 11 44 44 H 1.09002 * 113.76361 * 336.73597 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6353 2.1265 -1.3074 6 6 2.1448 3.5691 -1.3071 7 6 3.6697 3.5715 -1.1811 8 6 4.0744 2.8875 0.1261 9 6 3.5649 1.4448 0.1260 10 1 3.9998 0.9060 -0.7159 11 6 3.9691 0.7610 1.4335 12 7 5.4329 0.6561 1.4991 13 6 5.8737 0.2213 2.8430 14 6 6.8664 -0.6969 2.1074 15 6 6.9799 -2.0736 2.7099 16 1 6.4159 -2.3233 3.5963 17 6 7.8039 -3.0144 2.1292 18 7 7.9025 -4.2159 2.6546 19 14 8.7788 -2.5826 0.5954 20 1 10.1002 -2.0304 0.9880 21 1 8.9769 -3.8043 -0.2254 22 1 8.0344 -1.5702 -0.1957 23 6 5.9000 -0.6190 0.9117 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 0.5490 2.1252 -1.3970 30 1 2.0699 1.5874 -2.1492 31 1 1.7099 4.1080 -0.4654 32 1 1.8561 4.0566 -2.2384 33 1 4.0326 4.5992 -1.1814 34 1 4.1046 3.0328 -2.0230 35 1 3.6394 3.4263 0.9680 36 1 5.1607 2.8887 0.2157 37 1 3.5313 -0.2365 1.4724 38 1 3.6088 1.3490 2.2776 39 1 5.1093 -0.3174 3.4029 40 1 6.3524 1.0093 3.4244 41 1 7.8352 -0.2342 1.9193 42 1 8.4819 -4.8778 2.2459 43 1 6.3997 -0.5024 -0.0500 44 1 5.1433 -1.4036 0.9067 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600181380.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:07 Heat of formation + Delta-G solvation = -21.231318 kcal Electronic energy + Delta-G solvation = -19409.941158 eV Core-core repulsion = 16746.832106 eV Total energy + Delta-G solvation = -2663.109052 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.97808 -39.53076 -34.84908 -34.79191 -33.36116 -30.30049 -29.78143 -27.03240 -26.85982 -24.79599 -24.00775 -21.72274 -21.39742 -20.57476 -20.36939 -19.06550 -16.93459 -16.57323 -16.15853 -15.74617 -15.53010 -15.36607 -14.89356 -14.68700 -14.57364 -14.21641 -14.06248 -13.50571 -13.45106 -13.17730 -12.94358 -12.72324 -12.44745 -12.27237 -12.24237 -11.90240 -11.86717 -11.71365 -11.64540 -11.54405 -11.30477 -11.24307 -11.13093 -10.72938 -10.68701 -10.57053 -9.55741 -8.30247 -6.35060 1.37019 1.38942 1.51537 2.37001 3.03720 3.18661 3.70592 3.82374 3.91702 4.04509 4.16084 4.25314 4.30710 4.38110 4.46445 4.47898 4.59466 4.61312 4.63784 4.68735 4.74601 4.80141 4.82965 4.90489 4.91936 4.94537 5.02188 5.03453 5.17292 5.19931 5.21367 5.32894 5.36527 5.42218 5.45534 5.46278 5.50621 5.56198 5.65344 5.66052 5.72893 6.27510 6.32903 6.70647 7.31701 8.86014 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.026282 B = 0.005375 C = 0.005023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.102750 B = 5207.989656 C = 5573.052286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.127 4.127 3 C -0.075 4.075 4 H 0.071 0.929 5 C -0.110 4.110 6 C -0.115 4.115 7 C -0.118 4.118 8 C -0.101 4.101 9 C -0.065 4.065 10 H 0.051 0.949 11 C 0.024 3.976 12 N -0.476 5.476 13 C 0.019 3.981 14 C -0.015 4.015 15 C -0.517 4.517 16 H 0.031 0.969 17 C 0.016 3.984 18 N -0.950 5.950 19 Si 0.939 3.061 20 H -0.271 1.271 21 H -0.289 1.289 22 H -0.232 1.232 23 C 0.005 3.995 24 H 0.056 0.944 25 H 0.066 0.934 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.049 0.951 29 H 0.075 0.925 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.052 0.948 35 H 0.058 0.942 36 H 0.055 0.945 37 H 0.035 0.965 38 H 0.070 0.930 39 H 0.052 0.948 40 H 0.086 0.914 41 H 0.054 0.946 42 H 0.266 0.734 43 H 0.070 0.930 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.496 15.478 -9.352 22.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.164 4.164 3 C -0.094 4.094 4 H 0.090 0.910 5 C -0.147 4.147 6 C -0.153 4.153 7 C -0.155 4.155 8 C -0.139 4.139 9 C -0.084 4.084 10 H 0.069 0.931 11 C -0.105 4.105 12 N -0.198 5.198 13 C -0.110 4.110 14 C -0.035 4.035 15 C -0.555 4.555 16 H 0.049 0.951 17 C -0.182 4.182 18 N -0.590 5.590 19 Si 0.763 3.237 20 H -0.196 1.196 21 H -0.215 1.215 22 H -0.155 1.155 23 C -0.124 4.124 24 H 0.075 0.925 25 H 0.085 0.915 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.093 0.907 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.053 0.947 38 H 0.088 0.912 39 H 0.070 0.930 40 H 0.104 0.896 41 H 0.072 0.928 42 H 0.075 0.925 43 H 0.089 0.911 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -13.221 15.953 -9.636 22.850 hybrid contribution 0.351 -1.486 0.178 1.537 sum -12.870 14.466 -9.458 21.549 Atomic orbital electron populations 1.21776 0.94668 1.01672 1.02321 1.21666 0.96870 0.96660 1.01251 1.21137 0.93745 0.95640 0.98835 0.91049 1.21590 1.01040 0.95688 0.96395 1.21524 0.95095 0.96500 1.02137 1.21535 0.96485 1.00336 0.97162 1.21403 1.00579 0.94210 0.97689 1.20988 0.95264 0.96388 0.95746 0.93069 1.22801 0.89261 0.99376 0.99052 1.68379 1.12171 1.30761 1.08496 1.23748 0.97736 0.97263 0.92225 1.20771 0.94949 0.93899 0.93834 1.21219 1.25918 0.96410 1.11917 0.95059 1.25891 0.97312 0.94428 1.00558 1.70061 1.40308 1.05847 1.42750 0.85872 0.79515 0.78513 0.79799 1.19621 1.21487 1.15545 1.24222 0.98708 0.90325 0.99154 0.92499 0.91546 0.92991 0.92853 0.93200 0.90653 0.92729 0.91710 0.91154 0.91515 0.92897 0.92337 0.92635 0.94686 0.91168 0.92983 0.89578 0.92828 0.92525 0.91136 0.93104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 9.67 71.98 0.70 -1.92 16 2 C -0.13 -2.82 5.19 30.59 0.16 -2.66 16 3 C -0.07 -1.57 1.71 -10.79 -0.02 -1.59 16 4 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 5 C -0.11 -1.94 4.96 30.60 0.15 -1.79 16 6 C -0.12 -1.89 5.92 30.60 0.18 -1.71 16 7 C -0.12 -2.30 5.92 30.59 0.18 -2.12 16 8 C -0.10 -2.42 5.09 30.59 0.16 -2.27 16 9 C -0.06 -1.69 1.91 -10.79 -0.02 -1.71 16 10 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 11 C 0.02 0.73 3.97 86.30 0.34 1.08 16 12 N -0.48 -17.42 5.61 -907.97 -5.10 -22.52 16 13 C 0.02 0.76 7.50 86.41 0.65 1.41 16 14 C -0.02 -0.71 2.88 -10.89 -0.03 -0.74 16 15 C -0.52 -29.48 9.33 25.60 0.24 -29.24 16 16 H 0.03 1.98 8.06 -2.91 -0.02 1.96 16 17 C 0.02 0.90 5.47 84.66 0.46 1.36 16 18 N -0.95 -59.45 13.96 21.45 0.30 -59.15 16 19 Si 0.94 43.93 27.09 68.60 1.86 45.79 16 20 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 21 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 22 H -0.23 -9.94 5.28 99.48 0.53 -9.41 16 23 C 0.01 0.21 6.60 86.41 0.57 0.78 16 24 H 0.06 0.95 8.14 -2.39 -0.02 0.94 16 25 H 0.07 1.01 6.56 -2.39 -0.02 1.00 16 26 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.05 1.28 6.07 -2.39 -0.01 1.26 16 29 H 0.07 1.13 6.56 -2.39 -0.02 1.12 16 30 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 33 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 36 H 0.05 1.55 7.75 -2.39 -0.02 1.53 16 37 H 0.03 1.17 5.31 -2.39 -0.01 1.16 16 38 H 0.07 2.05 8.08 -2.39 -0.02 2.03 16 39 H 0.05 2.15 7.87 -2.39 -0.02 2.13 16 40 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 41 H 0.05 2.49 7.20 -2.39 -0.02 2.47 16 42 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 43 H 0.07 2.88 6.83 -2.39 -0.02 2.87 16 44 H 0.05 2.25 7.43 -2.39 -0.02 2.23 16 Total: -1.00 -62.09 326.05 1.52 -60.57 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: 0.75 Total: 16.44 kcal Atomic # 6 Polarization: -44.84 SS G_CDS: 3.72 Total: -41.12 kcal Atomic # 7 Polarization: -76.88 SS G_CDS: -4.80 Total: -81.68 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 1.86 Total: 45.79 kcal Total: -62.09 1.52 -60.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600181380.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.338 kcal (2) G-P(sol) polarization free energy of solvation -62.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds