Wall clock time and date at job start Mon Mar 30 2020 06:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47192 * 2 1 4 4 H 1.08992 * 109.47280 * 305.00193 * 3 2 1 5 5 C 1.53002 * 109.46978 * 65.00120 * 3 2 1 6 6 C 1.52997 * 109.46978 * 180.02562 * 5 3 2 7 7 C 1.53006 * 109.47164 * 299.99874 * 6 5 3 8 8 C 1.52997 * 109.47127 * 59.99836 * 7 6 5 9 9 C 1.52996 * 109.46975 * 184.99658 * 3 2 1 10 10 H 1.09001 * 109.47372 * 300.00372 * 9 3 2 11 11 C 1.53001 * 109.47302 * 60.00059 * 9 3 2 12 12 N 1.46894 * 109.47806 * 184.99722 * 11 9 3 13 13 C 1.47486 * 110.99858 * 74.02643 * 12 11 9 14 14 C 1.53511 * 87.92839 * 138.70699 * 13 12 11 15 15 C 1.50706 * 114.16913 * 220.32967 * 14 13 12 16 16 H 1.07994 * 119.99874 * 93.84199 * 15 14 13 17 17 C 1.37878 * 119.99807 * 273.84724 * 15 14 13 18 18 N 1.31507 * 120.00246 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99599 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47314 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47461 * 119.99807 * 19 17 15 22 22 H 1.48501 * 109.46802 * 239.99351 * 19 17 15 23 23 C 1.47479 * 111.00575 * 170.00092 * 12 11 9 24 24 H 1.09004 * 109.47334 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47375 * 299.99853 * 1 2 3 26 26 H 1.09002 * 109.47097 * 59.99849 * 1 2 3 27 27 H 1.08994 * 109.47001 * 239.99636 * 2 1 3 28 28 H 1.09000 * 109.46593 * 120.00131 * 2 1 3 29 29 H 1.09002 * 109.47097 * 299.99801 * 5 3 2 30 30 H 1.09001 * 109.47142 * 59.99766 * 5 3 2 31 31 H 1.09001 * 109.47375 * 59.99908 * 6 5 3 32 32 H 1.09000 * 109.47140 * 179.97438 * 6 5 3 33 33 H 1.08998 * 109.46505 * 299.99708 * 7 6 5 34 34 H 1.08996 * 109.46884 * 180.02562 * 7 6 5 35 35 H 1.09002 * 109.47153 * 180.02562 * 8 7 6 36 36 H 1.09001 * 109.46832 * 60.00321 * 8 7 6 37 37 H 1.08998 * 109.46991 * 305.00154 * 11 9 3 38 38 H 1.09008 * 109.46864 * 64.99913 * 11 9 3 39 39 H 1.08995 * 113.47767 * 253.47471 * 13 12 11 40 40 H 1.09002 * 113.47389 * 23.94070 * 13 12 11 41 41 H 1.08997 * 114.17127 * 87.62977 * 14 13 12 42 42 H 0.97002 * 119.99939 * 180.02562 * 18 17 15 43 43 H 1.08998 * 113.47265 * 336.06676 * 23 12 11 44 44 H 1.08997 * 113.47521 * 106.52876 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 1.6353 2.1265 1.3074 6 6 2.1447 3.5691 1.3071 7 6 3.6696 3.5715 1.1811 8 6 4.0744 2.8875 -0.1262 9 6 3.5648 1.4442 -0.1256 10 1 3.9994 0.9051 0.7162 11 6 3.9697 0.7602 -1.4329 12 7 5.4334 0.6548 -1.4978 13 6 5.9289 -0.3921 -0.5847 14 6 6.9097 -0.8123 -1.6883 15 6 7.0753 -2.3033 -1.8318 16 1 6.4745 -2.8471 -2.5457 17 6 7.9936 -2.9732 -1.0515 18 7 8.7254 -2.3110 -0.1823 19 14 8.1993 -4.8213 -1.2299 20 1 7.2656 -5.3253 -2.2688 21 1 9.5965 -5.1277 -1.6288 22 1 7.8990 -5.4802 0.0667 23 6 5.8523 -0.2047 -2.6206 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 0.5489 2.1252 1.3969 30 1 2.0699 1.5874 2.1492 31 1 1.7098 4.1080 0.4653 32 1 1.8560 4.0566 2.2383 33 1 4.1045 3.0328 2.0229 34 1 4.0325 4.5993 1.1814 35 1 5.1607 2.8888 -0.2158 36 1 3.6394 3.4263 -0.9680 37 1 3.5315 -0.2371 -1.4720 38 1 3.6100 1.3484 -2.2773 39 1 6.4193 0.0038 0.3045 40 1 5.1843 -1.1536 -0.3524 41 1 7.8559 -0.2714 -1.6740 42 1 9.3718 -2.7823 0.3664 43 1 5.0874 -0.9161 -2.9317 44 1 6.2779 0.3501 -3.4568 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600181381.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:10 Heat of formation + Delta-G solvation = -6.802774 kcal Electronic energy + Delta-G solvation = -19394.427345 eV Core-core repulsion = 16731.943962 eV Total energy + Delta-G solvation = -2662.483384 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.64515 -38.13845 -33.87197 -32.94782 -31.78667 -29.05197 -28.10485 -25.30776 -24.71229 -23.84327 -22.72138 -20.60454 -20.38534 -19.51134 -18.49741 -16.60435 -15.38696 -14.94205 -14.73940 -14.51587 -14.25940 -13.97736 -13.63655 -13.38628 -13.16191 -12.98455 -12.50006 -11.91645 -11.80878 -11.59643 -11.42279 -11.35443 -11.20669 -10.98573 -10.95443 -10.87490 -10.67320 -10.51634 -10.32922 -10.06993 -9.93108 -9.75466 -9.42173 -9.08352 -8.87119 -8.41439 -7.87161 -6.03467 -4.07488 3.28494 3.36833 3.40415 4.41507 4.70557 4.78145 4.81158 5.07898 5.17575 5.21450 5.26556 5.32101 5.45361 5.49168 5.62861 5.67016 5.71407 5.77335 5.81692 5.88462 5.92298 6.06648 6.09210 6.10378 6.16268 6.21973 6.27557 6.29400 6.39833 6.41600 6.47255 6.53012 6.57859 6.67864 6.73454 6.76263 6.89913 7.19670 7.27493 7.75867 7.94866 8.17269 8.41057 8.95851 9.57295 11.06218 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.026090 B = 0.005118 C = 0.004744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.970708 B = 5469.498155 C = 5901.277287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C -0.080 4.080 4 H 0.066 0.934 5 C -0.113 4.113 6 C -0.118 4.118 7 C -0.121 4.121 8 C -0.104 4.104 9 C -0.074 4.074 10 H 0.069 0.931 11 C 0.025 3.975 12 N -0.482 5.482 13 C 0.008 3.992 14 C 0.040 3.960 15 C -0.514 4.514 16 H 0.057 0.943 17 C 0.067 3.933 18 N -0.886 5.886 19 Si 0.889 3.111 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.284 1.284 23 C -0.006 4.006 24 H 0.050 0.950 25 H 0.053 0.947 26 H 0.050 0.950 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.075 0.925 36 H 0.053 0.947 37 H 0.038 0.962 38 H 0.059 0.941 39 H 0.060 0.940 40 H 0.050 0.950 41 H 0.063 0.937 42 H 0.261 0.739 43 H 0.051 0.949 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.998 8.714 2.119 16.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C -0.099 4.099 4 H 0.084 0.916 5 C -0.151 4.151 6 C -0.155 4.155 7 C -0.158 4.158 8 C -0.141 4.141 9 C -0.093 4.093 10 H 0.088 0.912 11 C -0.104 4.104 12 N -0.205 5.205 13 C -0.121 4.121 14 C 0.021 3.979 15 C -0.553 4.553 16 H 0.075 0.925 17 C -0.136 4.136 18 N -0.524 5.524 19 Si 0.717 3.283 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.210 1.210 23 C -0.135 4.135 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.094 0.906 36 H 0.072 0.928 37 H 0.057 0.943 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.068 0.932 41 H 0.081 0.919 42 H 0.070 0.930 43 H 0.069 0.931 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.653 9.403 2.311 16.738 hybrid contribution -0.343 -1.845 -0.029 1.877 sum -13.996 7.558 2.282 16.070 Atomic orbital electron populations 1.21812 0.96351 1.01203 1.01452 1.21678 0.95320 0.96824 1.02512 1.21173 0.95611 0.95485 0.97608 0.91605 1.21611 1.00025 0.95668 0.97756 1.21531 0.96313 0.96696 1.00996 1.21565 0.95330 1.00157 0.98768 1.21456 1.01945 0.94558 0.96187 1.21087 0.93710 0.96443 0.98023 0.91222 1.22707 0.91809 0.98870 0.97049 1.68840 1.09200 1.35965 1.06459 1.23954 0.98724 0.91195 0.98186 1.20104 0.92862 0.95478 0.89461 1.21083 1.20949 0.91992 1.21251 0.92487 1.25008 0.95251 0.98187 0.95144 1.69978 1.23644 1.35554 1.23227 0.86587 0.78000 0.85785 0.77941 1.19747 1.20910 1.21019 1.23978 0.99687 0.94417 0.95392 0.93118 0.92793 0.93057 0.91472 0.92046 0.92244 0.92145 0.92384 0.92666 0.92210 0.92551 0.90624 0.92846 0.94350 0.92230 0.92114 0.93172 0.91926 0.92970 0.93062 0.92263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.67 37.16 0.36 -1.18 16 2 C -0.13 -1.54 5.19 -26.73 -0.14 -1.68 16 3 C -0.08 -0.98 1.72 -90.62 -0.16 -1.13 16 4 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 5 C -0.11 -1.24 4.96 -26.73 -0.13 -1.38 16 6 C -0.12 -1.25 5.92 -26.73 -0.16 -1.41 16 7 C -0.12 -1.45 5.92 -26.73 -0.16 -1.61 16 8 C -0.10 -1.46 5.09 -26.71 -0.14 -1.59 16 9 C -0.07 -1.09 1.76 -90.59 -0.16 -1.25 16 10 H 0.07 1.16 7.55 -51.93 -0.39 0.77 16 11 C 0.02 0.41 4.00 -3.83 -0.02 0.40 16 12 N -0.48 -9.75 5.87 -244.62 -1.44 -11.19 16 13 C 0.01 0.19 6.50 -7.53 -0.05 0.14 16 14 C 0.04 1.01 3.77 -91.24 -0.34 0.67 16 15 C -0.51 -14.12 8.82 -34.44 -0.30 -14.42 16 16 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 17 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 18 N -0.89 -25.74 13.26 55.43 0.74 -25.00 16 19 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 20 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 C -0.01 -0.13 7.28 -7.54 -0.05 -0.18 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.05 0.51 6.57 -51.93 -0.34 0.17 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.89 6.07 -51.93 -0.32 0.58 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.06 0.59 6.57 -51.93 -0.34 0.25 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.08 1.22 7.75 -51.93 -0.40 0.82 16 36 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.04 0.67 5.49 -51.93 -0.29 0.38 16 38 H 0.06 0.96 8.14 -51.92 -0.42 0.54 16 39 H 0.06 1.46 8.14 -51.93 -0.42 1.04 16 40 H 0.05 1.17 7.66 -51.93 -0.40 0.78 16 41 H 0.06 1.74 8.11 -51.93 -0.42 1.32 16 42 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 43 H 0.05 1.09 7.72 -51.93 -0.40 0.68 16 44 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 331.51 15.07 5.00 5.00 Total: -1.00 -27.57 331.51 -10.61 -38.17 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -8.34 Total: -0.25 kcal Atomic # 6 Polarization: -21.33 SS G_CDS: -1.54 Total: -22.87 kcal Atomic # 7 Polarization: -35.49 SS G_CDS: -0.70 Total: -36.19 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -27.57 -10.61 -38.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600181381.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.371 kcal (2) G-P(sol) polarization free energy of solvation -27.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds