Wall clock time and date at job start Mon Mar 30 2020 06:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47192 * 2 1 4 4 H 1.08992 * 109.47280 * 305.00193 * 3 2 1 5 5 C 1.53002 * 109.46978 * 65.00120 * 3 2 1 6 6 C 1.52997 * 109.46978 * 180.02562 * 5 3 2 7 7 C 1.53006 * 109.47164 * 299.99874 * 6 5 3 8 8 C 1.52997 * 109.47127 * 59.99836 * 7 6 5 9 9 C 1.52996 * 109.46975 * 184.99658 * 3 2 1 10 10 H 1.09001 * 109.47372 * 300.00372 * 9 3 2 11 11 C 1.53001 * 109.47302 * 60.00059 * 9 3 2 12 12 N 1.46894 * 109.47806 * 184.99722 * 11 9 3 13 13 C 1.47486 * 110.99858 * 74.02643 * 12 11 9 14 14 C 1.53511 * 87.92839 * 138.70699 * 13 12 11 15 15 C 1.50706 * 114.16913 * 220.32967 * 14 13 12 16 16 H 1.07994 * 119.99874 * 93.84199 * 15 14 13 17 17 C 1.37878 * 119.99807 * 273.84724 * 15 14 13 18 18 N 1.31507 * 120.00246 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99599 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47314 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47461 * 119.99807 * 19 17 15 22 22 H 1.48501 * 109.46802 * 239.99351 * 19 17 15 23 23 C 1.47479 * 111.00575 * 170.00092 * 12 11 9 24 24 H 1.09004 * 109.47334 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47375 * 299.99853 * 1 2 3 26 26 H 1.09002 * 109.47097 * 59.99849 * 1 2 3 27 27 H 1.08994 * 109.47001 * 239.99636 * 2 1 3 28 28 H 1.09000 * 109.46593 * 120.00131 * 2 1 3 29 29 H 1.09002 * 109.47097 * 299.99801 * 5 3 2 30 30 H 1.09001 * 109.47142 * 59.99766 * 5 3 2 31 31 H 1.09001 * 109.47375 * 59.99908 * 6 5 3 32 32 H 1.09000 * 109.47140 * 179.97438 * 6 5 3 33 33 H 1.08998 * 109.46505 * 299.99708 * 7 6 5 34 34 H 1.08996 * 109.46884 * 180.02562 * 7 6 5 35 35 H 1.09002 * 109.47153 * 180.02562 * 8 7 6 36 36 H 1.09001 * 109.46832 * 60.00321 * 8 7 6 37 37 H 1.08998 * 109.46991 * 305.00154 * 11 9 3 38 38 H 1.09008 * 109.46864 * 64.99913 * 11 9 3 39 39 H 1.08995 * 113.47767 * 253.47471 * 13 12 11 40 40 H 1.09002 * 113.47389 * 23.94070 * 13 12 11 41 41 H 1.08997 * 114.17127 * 87.62977 * 14 13 12 42 42 H 0.97002 * 119.99939 * 180.02562 * 18 17 15 43 43 H 1.08998 * 113.47265 * 336.06676 * 23 12 11 44 44 H 1.08997 * 113.47521 * 106.52876 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 1.6353 2.1265 1.3074 6 6 2.1447 3.5691 1.3071 7 6 3.6696 3.5715 1.1811 8 6 4.0744 2.8875 -0.1262 9 6 3.5648 1.4442 -0.1256 10 1 3.9994 0.9051 0.7162 11 6 3.9697 0.7602 -1.4329 12 7 5.4334 0.6548 -1.4978 13 6 5.9289 -0.3921 -0.5847 14 6 6.9097 -0.8123 -1.6883 15 6 7.0753 -2.3033 -1.8318 16 1 6.4745 -2.8471 -2.5457 17 6 7.9936 -2.9732 -1.0515 18 7 8.7254 -2.3110 -0.1823 19 14 8.1993 -4.8213 -1.2299 20 1 7.2656 -5.3253 -2.2688 21 1 9.5965 -5.1277 -1.6288 22 1 7.8990 -5.4802 0.0667 23 6 5.8523 -0.2047 -2.6206 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 0.5489 2.1252 1.3969 30 1 2.0699 1.5874 2.1492 31 1 1.7098 4.1080 0.4653 32 1 1.8560 4.0566 2.2383 33 1 4.1045 3.0328 2.0229 34 1 4.0325 4.5993 1.1814 35 1 5.1607 2.8888 -0.2158 36 1 3.6394 3.4263 -0.9680 37 1 3.5315 -0.2371 -1.4720 38 1 3.6100 1.3484 -2.2773 39 1 6.4193 0.0038 0.3045 40 1 5.1843 -1.1536 -0.3524 41 1 7.8559 -0.2714 -1.6740 42 1 9.3718 -2.7823 0.3664 43 1 5.0874 -0.9161 -2.9317 44 1 6.2779 0.3501 -3.4568 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600181381.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:10 Heat of formation + Delta-G solvation = -21.534570 kcal Electronic energy + Delta-G solvation = -19395.066164 eV Core-core repulsion = 16731.943962 eV Total energy + Delta-G solvation = -2663.122202 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.09530 -39.52441 -34.87436 -34.80448 -33.25040 -30.12577 -29.63443 -27.07449 -26.53555 -24.81261 -24.24956 -21.81948 -21.41443 -20.65888 -20.33480 -18.65555 -16.78033 -16.57837 -16.15814 -15.94480 -15.61140 -15.24272 -14.80990 -14.71862 -14.39566 -14.08314 -13.83764 -13.49989 -13.24398 -13.20165 -12.94092 -12.68442 -12.50701 -12.35637 -12.27735 -12.25688 -11.91033 -11.69077 -11.65401 -11.58396 -11.26403 -11.15627 -10.86421 -10.72663 -10.60663 -10.48894 -9.59999 -8.16260 -6.27650 1.40298 1.41881 1.53735 2.41338 3.13105 3.33951 3.68490 3.79467 3.90850 4.08086 4.20999 4.30728 4.34077 4.39027 4.47170 4.52303 4.57566 4.61230 4.65107 4.69585 4.78228 4.82766 4.87543 4.90703 4.92523 4.97457 5.01625 5.16978 5.18393 5.19891 5.22708 5.32388 5.35777 5.41045 5.43537 5.47859 5.55074 5.60999 5.64682 5.70886 5.84390 6.29511 6.44046 6.81798 7.40886 8.93886 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.026090 B = 0.005118 C = 0.004744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.970708 B = 5469.498155 C = 5901.277287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.127 4.127 3 C -0.072 4.072 4 H 0.076 0.924 5 C -0.111 4.111 6 C -0.113 4.113 7 C -0.119 4.119 8 C -0.101 4.101 9 C -0.069 4.069 10 H 0.043 0.957 11 C 0.025 3.975 12 N -0.478 5.478 13 C 0.025 3.975 14 C 0.020 3.980 15 C -0.530 4.530 16 H 0.058 0.942 17 C 0.015 3.985 18 N -0.923 5.923 19 Si 0.958 3.042 20 H -0.264 1.264 21 H -0.279 1.279 22 H -0.280 1.280 23 C 0.008 3.992 24 H 0.052 0.948 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.052 0.948 28 H 0.048 0.952 29 H 0.079 0.921 30 H 0.050 0.950 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.047 0.953 34 H 0.067 0.933 35 H 0.047 0.953 36 H 0.063 0.937 37 H 0.035 0.965 38 H 0.076 0.924 39 H 0.040 0.960 40 H 0.044 0.956 41 H 0.029 0.971 42 H 0.263 0.737 43 H 0.058 0.942 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.212 9.024 1.770 18.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.164 4.164 3 C -0.091 4.091 4 H 0.094 0.906 5 C -0.148 4.148 6 C -0.151 4.151 7 C -0.156 4.156 8 C -0.139 4.139 9 C -0.088 4.088 10 H 0.062 0.938 11 C -0.103 4.103 12 N -0.200 5.200 13 C -0.104 4.104 14 C 0.001 3.999 15 C -0.568 4.568 16 H 0.076 0.924 17 C -0.184 4.184 18 N -0.562 5.562 19 Si 0.783 3.217 20 H -0.188 1.188 21 H -0.204 1.204 22 H -0.206 1.206 23 C -0.121 4.121 24 H 0.071 0.929 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.097 0.903 30 H 0.069 0.931 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.066 0.934 34 H 0.086 0.914 35 H 0.065 0.935 36 H 0.082 0.918 37 H 0.053 0.947 38 H 0.094 0.906 39 H 0.059 0.941 40 H 0.062 0.938 41 H 0.047 0.953 42 H 0.072 0.928 43 H 0.076 0.924 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -15.880 9.721 1.951 18.722 hybrid contribution 0.365 -1.898 0.063 1.934 sum -15.516 7.823 2.014 17.493 Atomic orbital electron populations 1.21771 0.94375 1.01762 1.02397 1.21663 0.97053 0.96507 1.01206 1.21119 0.93246 0.95844 0.98922 0.90556 1.21605 1.01172 0.95671 0.96385 1.21514 0.94696 0.96564 1.02311 1.21545 0.96836 1.00286 0.96981 1.21404 1.00165 0.94397 0.97905 1.21044 0.95793 0.96311 0.95677 0.93803 1.22787 0.89204 0.99337 0.98985 1.68789 1.11976 1.34394 1.04836 1.23623 0.97958 0.91673 0.97191 1.20061 0.92669 0.94698 0.92472 1.21397 1.21086 0.93108 1.21185 0.92381 1.25831 0.94942 1.02927 0.94744 1.70103 1.24386 1.37489 1.24173 0.85513 0.78113 0.79993 0.78100 1.18798 1.20430 1.20599 1.23812 0.98381 0.94470 0.95413 0.92856 0.91675 0.92209 0.92906 0.93304 0.90277 0.93133 0.91316 0.91084 0.93404 0.91429 0.93451 0.91794 0.94673 0.90578 0.94118 0.93787 0.95286 0.92845 0.92385 0.90975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 9.67 71.98 0.70 -1.92 16 2 C -0.13 -2.94 5.19 30.59 0.16 -2.78 16 3 C -0.07 -1.64 1.72 -10.80 -0.02 -1.66 16 4 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 5 C -0.11 -2.17 4.96 30.59 0.15 -2.02 16 6 C -0.11 -2.08 5.92 30.60 0.18 -1.90 16 7 C -0.12 -2.70 5.92 30.60 0.18 -2.52 16 8 C -0.10 -2.76 5.09 30.61 0.16 -2.61 16 9 C -0.07 -2.01 1.76 -10.78 -0.02 -2.03 16 10 H 0.04 1.50 7.55 -2.39 -0.02 1.48 16 11 C 0.03 0.84 4.00 86.30 0.35 1.18 16 12 N -0.48 -19.50 5.87 -927.84 -5.45 -24.95 16 13 C 0.02 1.19 6.50 83.58 0.54 1.74 16 14 C 0.02 1.05 3.77 -11.20 -0.04 1.01 16 15 C -0.53 -29.54 8.82 25.60 0.23 -29.31 16 16 H 0.06 3.15 7.81 -2.91 -0.02 3.13 16 17 C 0.01 0.83 5.46 84.66 0.46 1.29 16 18 N -0.92 -54.96 13.26 21.45 0.28 -54.67 16 19 Si 0.96 43.69 29.54 68.60 2.03 45.72 16 20 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 21 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 22 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 23 C 0.01 0.35 7.28 83.58 0.61 0.95 16 24 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 25 H 0.06 1.03 6.57 -2.39 -0.02 1.01 16 26 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.05 1.36 6.07 -2.39 -0.01 1.35 16 28 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.08 1.27 6.57 -2.39 -0.02 1.26 16 30 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.05 1.55 7.75 -2.39 -0.02 1.53 16 36 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.04 1.21 5.49 -2.39 -0.01 1.19 16 38 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 39 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.04 2.13 7.66 -2.39 -0.02 2.11 16 41 H 0.03 1.69 8.11 -2.39 -0.02 1.68 16 42 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 43 H 0.06 2.41 7.72 -2.39 -0.02 2.39 16 44 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 Total: -1.00 -59.88 331.51 1.42 -58.46 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: 0.92 Total: 16.03 kcal Atomic # 6 Polarization: -44.21 SS G_CDS: 3.63 Total: -40.58 kcal Atomic # 7 Polarization: -74.46 SS G_CDS: -5.16 Total: -79.62 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -59.88 1.42 -58.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600181381.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.927 kcal (2) G-P(sol) polarization free energy of solvation -59.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds