Wall clock time and date at job start Mon Mar 30 2020 06:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47180 * 2 1 4 4 H 1.09003 * 109.46741 * 55.00380 * 3 2 1 5 5 C 1.53001 * 109.47202 * 295.00205 * 3 2 1 6 6 C 1.52998 * 109.46886 * 299.99707 * 5 3 2 7 7 C 1.53000 * 109.47433 * 300.00224 * 6 5 3 8 8 C 1.52995 * 109.47106 * 59.99735 * 7 6 5 9 9 C 1.52992 * 109.47497 * 300.00402 * 8 7 6 10 10 H 1.09000 * 109.47096 * 299.99934 * 9 8 7 11 11 C 1.53001 * 109.47192 * 180.02562 * 9 8 7 12 12 N 1.46904 * 109.47172 * 176.79155 * 11 9 8 13 13 C 1.47955 * 111.00219 * 184.69838 * 12 11 9 14 14 C 1.53934 * 86.18346 * 137.57906 * 13 12 11 15 15 C 1.50701 * 113.73500 * 221.81117 * 14 13 12 16 16 H 1.07999 * 119.99757 * 358.10587 * 15 14 13 17 17 C 1.37867 * 119.99993 * 178.09870 * 15 14 13 18 18 N 1.31517 * 120.00441 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00168 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46785 * 0.02562 * 19 17 15 21 21 H 1.48492 * 109.47326 * 120.00166 * 19 17 15 22 22 H 1.48508 * 109.47447 * 240.00366 * 19 17 15 23 23 C 1.48308 * 111.00443 * 284.04884 * 12 11 9 24 24 H 1.09000 * 109.47045 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46794 * 299.99911 * 1 2 3 26 26 H 1.08999 * 109.46906 * 59.99689 * 1 2 3 27 27 H 1.08998 * 109.47261 * 240.00325 * 2 1 3 28 28 H 1.09000 * 109.47316 * 119.99969 * 2 1 3 29 29 H 1.09001 * 109.47070 * 59.99756 * 5 3 2 30 30 H 1.09000 * 109.47036 * 179.97438 * 5 3 2 31 31 H 1.09000 * 109.47239 * 60.00177 * 6 5 3 32 32 H 1.09004 * 109.46859 * 179.97438 * 6 5 3 33 33 H 1.09003 * 109.47124 * 180.02562 * 7 6 5 34 34 H 1.09000 * 109.46870 * 300.00180 * 7 6 5 35 35 H 1.09007 * 109.47119 * 179.97438 * 8 7 6 36 36 H 1.09000 * 109.46893 * 60.00459 * 8 7 6 37 37 H 1.08997 * 109.47227 * 56.79495 * 11 9 8 38 38 H 1.08994 * 109.47163 * 296.78701 * 11 9 8 39 39 H 1.09002 * 113.76075 * 23.26042 * 13 12 11 40 40 H 1.09002 * 113.85845 * 251.91278 * 13 12 11 41 41 H 1.09004 * 113.72826 * 90.63672 * 14 13 12 42 42 H 0.97000 * 120.00147 * 179.97438 * 18 17 15 43 43 H 1.08997 * 113.85962 * 108.13914 * 23 12 11 44 44 H 1.09000 * 113.75635 * 336.68352 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 1.6353 2.1266 -1.3073 6 6 2.2454 1.3700 -2.4889 7 6 3.7702 1.3718 -2.3632 8 6 4.1749 0.6878 -1.0559 9 6 3.5649 1.4443 0.1257 10 1 3.9282 2.4720 0.1258 11 6 3.9702 0.7606 1.4331 12 7 3.4487 1.5303 2.5704 13 6 3.9153 0.9617 3.8541 14 6 4.1493 2.4176 4.2959 15 6 5.4351 2.6219 5.0550 16 1 6.0764 1.7793 5.2675 17 6 5.7927 3.8844 5.4780 18 7 5.0116 4.9105 5.2195 19 14 7.3867 4.1378 6.4183 20 1 8.0798 2.8342 6.5778 21 1 8.2610 5.0741 5.6673 22 1 7.0868 4.7066 7.7570 23 6 4.2541 2.7548 2.7976 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 0.5489 2.1253 -1.3969 30 1 1.9982 3.1544 -1.3071 31 1 1.8820 0.3423 -2.4890 32 1 1.9566 1.8571 -3.4203 33 1 4.2048 0.8331 -3.2053 34 1 4.1335 2.3994 -2.3632 35 1 5.2613 0.6886 -0.9666 36 1 3.8116 -0.3399 -1.0559 37 1 5.0573 0.7115 1.4956 38 1 3.5588 -0.2484 1.4581 39 1 4.8307 0.3763 3.7683 40 1 3.1356 0.4511 4.4195 41 1 3.2887 2.8703 4.7883 42 1 5.2630 5.7986 5.5174 43 1 3.7436 3.6764 2.5181 44 1 5.2683 2.6927 2.4033 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600181382.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:13 Heat of formation + Delta-G solvation = -4.221458 kcal Electronic energy + Delta-G solvation = -19538.629860 eV Core-core repulsion = 16876.258411 eV Total energy + Delta-G solvation = -2662.371449 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.74507 -38.07726 -33.14452 -32.92757 -31.81566 -29.26429 -28.00645 -25.27580 -24.88316 -23.62262 -22.62934 -21.69853 -20.43594 -18.51016 -17.91032 -16.57075 -15.58544 -15.23224 -14.82512 -14.60762 -14.15569 -14.05607 -13.48932 -13.30198 -13.16227 -12.70936 -12.17169 -11.95584 -11.79023 -11.65925 -11.55890 -11.39697 -11.15711 -11.03901 -10.97135 -10.85885 -10.62386 -10.46511 -10.27008 -9.77076 -9.74533 -9.71941 -9.48137 -9.04103 -8.93130 -8.41849 -7.76894 -6.02756 -4.06890 3.28589 3.36905 3.40501 4.41987 4.73385 4.83389 4.89468 5.06476 5.23537 5.28248 5.30705 5.36361 5.46519 5.57360 5.61510 5.71841 5.77641 5.79973 5.87521 5.93017 6.01859 6.09987 6.12671 6.16077 6.19264 6.22005 6.26664 6.30282 6.42285 6.45507 6.52855 6.60344 6.64808 6.71109 6.75332 6.80684 6.96508 7.20860 7.32606 7.76772 7.95362 8.17870 8.40918 8.95762 9.57880 11.06716 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.032801 B = 0.004903 C = 0.004685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.422768 B = 5709.205130 C = 5975.210519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C -0.072 4.072 4 H 0.083 0.917 5 C -0.117 4.117 6 C -0.119 4.119 7 C -0.116 4.116 8 C -0.115 4.115 9 C -0.074 4.074 10 H 0.068 0.932 11 C 0.026 3.974 12 N -0.486 5.486 13 C -0.003 4.003 14 C 0.038 3.962 15 C -0.517 4.517 16 H 0.056 0.944 17 C 0.066 3.934 18 N -0.887 5.887 19 Si 0.889 3.111 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.283 1.283 23 C 0.016 3.984 24 H 0.045 0.955 25 H 0.054 0.946 26 H 0.050 0.950 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.061 0.939 37 H 0.030 0.970 38 H 0.064 0.936 39 H 0.052 0.948 40 H 0.063 0.937 41 H 0.057 0.943 42 H 0.260 0.740 43 H 0.064 0.936 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.380 -7.803 -13.673 16.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.157 4.157 3 C -0.090 4.090 4 H 0.102 0.898 5 C -0.154 4.154 6 C -0.157 4.157 7 C -0.154 4.154 8 C -0.153 4.153 9 C -0.092 4.092 10 H 0.086 0.914 11 C -0.103 4.103 12 N -0.209 5.209 13 C -0.132 4.132 14 C 0.019 3.981 15 C -0.555 4.555 16 H 0.075 0.925 17 C -0.136 4.136 18 N -0.525 5.525 19 Si 0.717 3.283 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.209 1.209 23 C -0.113 4.113 24 H 0.064 0.936 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.049 0.951 38 H 0.082 0.918 39 H 0.070 0.930 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.070 0.930 43 H 0.083 0.917 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.098 -7.569 -13.801 16.880 hybrid contribution 1.867 0.135 0.505 1.939 sum -4.231 -7.434 -13.296 15.809 Atomic orbital electron populations 1.21802 0.96608 1.00745 1.01658 1.21673 0.95198 0.97259 1.01616 1.20999 0.94873 0.95841 0.97281 0.89836 1.21619 0.99851 0.99135 0.94839 1.21559 0.95568 1.00691 0.97846 1.21495 0.95919 1.00771 0.97222 1.21592 0.99873 0.99480 0.94397 1.21050 0.95382 0.99603 0.93194 0.91387 1.22657 0.97176 0.97882 0.92613 1.68528 1.46525 1.05262 1.00556 1.24024 0.97341 1.00183 0.91611 1.20307 0.97543 0.88661 0.91584 1.21146 1.05285 0.93406 1.35656 0.92537 1.25000 0.96816 0.96195 0.95632 1.69979 1.36947 0.99352 1.46175 0.86594 0.83787 0.78185 0.79783 1.19777 1.21041 1.20930 1.24041 0.94323 0.92265 1.00672 0.93591 0.92658 0.93049 0.92333 0.91671 0.92240 0.92355 0.91920 0.92842 0.92659 0.92218 0.92520 0.92013 0.95139 0.91767 0.93010 0.91899 0.92494 0.93002 0.91700 0.93080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.67 37.16 0.36 -1.34 16 2 C -0.12 -1.49 4.48 -26.73 -0.12 -1.61 16 3 C -0.07 -0.98 2.06 -90.62 -0.19 -1.17 16 4 H 0.08 1.36 7.70 -51.93 -0.40 0.96 16 5 C -0.12 -1.40 5.21 -26.73 -0.14 -1.54 16 6 C -0.12 -1.26 5.65 -26.73 -0.15 -1.41 16 7 C -0.12 -1.28 5.92 -26.73 -0.16 -1.44 16 8 C -0.12 -1.43 4.93 -26.74 -0.13 -1.56 16 9 C -0.07 -1.08 2.02 -90.62 -0.18 -1.26 16 10 H 0.07 1.13 7.67 -51.93 -0.40 0.73 16 11 C 0.03 0.43 3.90 -3.82 -0.01 0.42 16 12 N -0.49 -9.74 5.61 -238.03 -1.33 -11.08 16 13 C 0.00 -0.06 7.54 -2.76 -0.02 -0.08 16 14 C 0.04 0.96 3.59 -90.84 -0.33 0.64 16 15 C -0.52 -14.21 8.77 -34.44 -0.30 -14.51 16 16 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 17 C 0.07 1.83 5.46 -17.82 -0.10 1.74 16 18 N -0.89 -25.74 13.29 55.43 0.74 -25.00 16 19 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 20 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 C 0.02 0.36 6.90 -2.57 -0.02 0.35 16 24 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.53 6.56 -51.93 -0.34 0.19 16 27 H 0.06 0.67 4.83 -51.93 -0.25 0.42 16 28 H 0.06 0.89 6.11 -51.93 -0.32 0.57 16 29 H 0.06 0.66 6.56 -51.93 -0.34 0.32 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.64 6.32 -51.93 -0.33 0.32 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 36 H 0.06 0.73 6.54 -51.93 -0.34 0.39 16 37 H 0.03 0.55 7.68 -51.93 -0.40 0.15 16 38 H 0.06 1.02 6.16 -51.93 -0.32 0.70 16 39 H 0.05 1.09 7.83 -51.93 -0.41 0.69 16 40 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.06 1.58 8.14 -51.93 -0.42 1.16 16 42 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 43 H 0.06 1.56 8.14 -51.93 -0.42 1.14 16 44 H 0.05 1.21 7.65 -51.93 -0.40 0.82 16 LS Contribution 325.02 15.07 4.90 4.90 Total: -1.00 -27.52 325.02 -10.22 -37.74 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -8.01 Total: 0.01 kcal Atomic # 6 Polarization: -21.29 SS G_CDS: -1.49 Total: -22.78 kcal Atomic # 7 Polarization: -35.48 SS G_CDS: -0.60 Total: -36.07 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -27.52 -10.22 -37.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600181382.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.519 kcal (2) G-P(sol) polarization free energy of solvation -27.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds