Wall clock time and date at job start Mon Mar 30 2020 06:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47180 * 2 1 4 4 H 1.09003 * 109.46741 * 55.00380 * 3 2 1 5 5 C 1.53001 * 109.47202 * 295.00205 * 3 2 1 6 6 C 1.52998 * 109.46886 * 299.99707 * 5 3 2 7 7 C 1.53000 * 109.47433 * 300.00224 * 6 5 3 8 8 C 1.52995 * 109.47106 * 59.99735 * 7 6 5 9 9 C 1.52992 * 109.47497 * 300.00402 * 8 7 6 10 10 H 1.09000 * 109.47096 * 299.99934 * 9 8 7 11 11 C 1.53001 * 109.47192 * 180.02562 * 9 8 7 12 12 N 1.46904 * 109.47172 * 176.79155 * 11 9 8 13 13 C 1.47955 * 111.00219 * 184.69838 * 12 11 9 14 14 C 1.53934 * 86.18346 * 137.57906 * 13 12 11 15 15 C 1.50701 * 113.73500 * 221.81117 * 14 13 12 16 16 H 1.07999 * 119.99757 * 358.10587 * 15 14 13 17 17 C 1.37867 * 119.99993 * 178.09870 * 15 14 13 18 18 N 1.31517 * 120.00441 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00168 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46785 * 0.02562 * 19 17 15 21 21 H 1.48492 * 109.47326 * 120.00166 * 19 17 15 22 22 H 1.48508 * 109.47447 * 240.00366 * 19 17 15 23 23 C 1.48308 * 111.00443 * 284.04884 * 12 11 9 24 24 H 1.09000 * 109.47045 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46794 * 299.99911 * 1 2 3 26 26 H 1.08999 * 109.46906 * 59.99689 * 1 2 3 27 27 H 1.08998 * 109.47261 * 240.00325 * 2 1 3 28 28 H 1.09000 * 109.47316 * 119.99969 * 2 1 3 29 29 H 1.09001 * 109.47070 * 59.99756 * 5 3 2 30 30 H 1.09000 * 109.47036 * 179.97438 * 5 3 2 31 31 H 1.09000 * 109.47239 * 60.00177 * 6 5 3 32 32 H 1.09004 * 109.46859 * 179.97438 * 6 5 3 33 33 H 1.09003 * 109.47124 * 180.02562 * 7 6 5 34 34 H 1.09000 * 109.46870 * 300.00180 * 7 6 5 35 35 H 1.09007 * 109.47119 * 179.97438 * 8 7 6 36 36 H 1.09000 * 109.46893 * 60.00459 * 8 7 6 37 37 H 1.08997 * 109.47227 * 56.79495 * 11 9 8 38 38 H 1.08994 * 109.47163 * 296.78701 * 11 9 8 39 39 H 1.09002 * 113.76075 * 23.26042 * 13 12 11 40 40 H 1.09002 * 113.85845 * 251.91278 * 13 12 11 41 41 H 1.09004 * 113.72826 * 90.63672 * 14 13 12 42 42 H 0.97000 * 120.00147 * 179.97438 * 18 17 15 43 43 H 1.08997 * 113.85962 * 108.13914 * 23 12 11 44 44 H 1.09000 * 113.75635 * 336.68352 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 1.6353 2.1266 -1.3073 6 6 2.2454 1.3700 -2.4889 7 6 3.7702 1.3718 -2.3632 8 6 4.1749 0.6878 -1.0559 9 6 3.5649 1.4443 0.1257 10 1 3.9282 2.4720 0.1258 11 6 3.9702 0.7606 1.4331 12 7 3.4487 1.5303 2.5704 13 6 3.9153 0.9617 3.8541 14 6 4.1493 2.4176 4.2959 15 6 5.4351 2.6219 5.0550 16 1 6.0764 1.7793 5.2675 17 6 5.7927 3.8844 5.4780 18 7 5.0116 4.9105 5.2195 19 14 7.3867 4.1378 6.4183 20 1 8.0798 2.8342 6.5778 21 1 8.2610 5.0741 5.6673 22 1 7.0868 4.7066 7.7570 23 6 4.2541 2.7548 2.7976 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 0.5489 2.1253 -1.3969 30 1 1.9982 3.1544 -1.3071 31 1 1.8820 0.3423 -2.4890 32 1 1.9566 1.8571 -3.4203 33 1 4.2048 0.8331 -3.2053 34 1 4.1335 2.3994 -2.3632 35 1 5.2613 0.6886 -0.9666 36 1 3.8116 -0.3399 -1.0559 37 1 5.0573 0.7115 1.4956 38 1 3.5588 -0.2484 1.4581 39 1 4.8307 0.3763 3.7683 40 1 3.1356 0.4511 4.4195 41 1 3.2887 2.8703 4.7883 42 1 5.2630 5.7986 5.5174 43 1 3.7436 3.6764 2.5181 44 1 5.2683 2.6927 2.4033 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600181382.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:12 Heat of formation + Delta-G solvation = -18.910824 kcal Electronic energy + Delta-G solvation = -19539.266839 eV Core-core repulsion = 16876.258411 eV Total energy + Delta-G solvation = -2663.008428 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.06398 -39.60013 -34.85045 -34.07043 -33.28411 -30.35706 -29.56242 -27.05492 -26.69638 -24.65515 -24.10735 -22.71889 -21.71663 -20.38635 -18.98894 -18.61659 -16.74149 -16.68111 -16.46547 -16.10357 -15.71198 -15.30029 -14.84313 -14.67338 -14.14232 -13.96776 -13.68603 -13.34567 -13.28228 -12.99619 -12.96009 -12.77728 -12.75020 -12.37064 -12.32652 -12.16671 -11.97679 -11.84347 -11.65835 -11.29768 -11.12841 -10.89418 -10.82615 -10.69279 -10.63322 -10.49488 -9.51521 -8.16022 -6.27690 1.39619 1.41216 1.52976 2.41043 3.13592 3.26844 3.73260 3.86655 3.90054 4.16959 4.28090 4.33581 4.39777 4.43323 4.46017 4.54396 4.58823 4.64839 4.69657 4.76504 4.79613 4.84920 4.88163 4.92214 4.99390 5.00513 5.04002 5.13176 5.22935 5.23713 5.26273 5.30511 5.35549 5.41869 5.50150 5.58629 5.62362 5.64057 5.71657 5.78329 5.85182 6.29397 6.44368 6.81336 7.40839 8.93659 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.032801 B = 0.004903 C = 0.004685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.422768 B = 5709.205130 C = 5975.210519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C -0.069 4.069 4 H 0.050 0.950 5 C -0.115 4.115 6 C -0.114 4.114 7 C -0.115 4.115 8 C -0.110 4.110 9 C -0.070 4.070 10 H 0.041 0.959 11 C 0.027 3.973 12 N -0.479 5.479 13 C 0.011 3.989 14 C 0.020 3.980 15 C -0.532 4.532 16 H 0.057 0.943 17 C 0.014 3.986 18 N -0.922 5.922 19 Si 0.957 3.043 20 H -0.265 1.265 21 H -0.280 1.280 22 H -0.279 1.279 23 C 0.030 3.970 24 H 0.059 0.941 25 H 0.040 0.960 26 H 0.062 0.938 27 H 0.076 0.924 28 H 0.051 0.949 29 H 0.069 0.931 30 H 0.044 0.956 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.049 0.951 35 H 0.054 0.946 36 H 0.075 0.925 37 H 0.022 0.978 38 H 0.083 0.917 39 H 0.058 0.942 40 H 0.077 0.923 41 H 0.023 0.977 42 H 0.262 0.738 43 H 0.045 0.955 44 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.094 -9.493 -15.149 18.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.152 4.152 3 C -0.087 4.087 4 H 0.068 0.932 5 C -0.153 4.153 6 C -0.152 4.152 7 C -0.153 4.153 8 C -0.148 4.148 9 C -0.089 4.089 10 H 0.060 0.940 11 C -0.102 4.102 12 N -0.201 5.201 13 C -0.118 4.118 14 C 0.001 3.999 15 C -0.571 4.571 16 H 0.075 0.925 17 C -0.185 4.185 18 N -0.561 5.561 19 Si 0.782 3.218 20 H -0.189 1.189 21 H -0.206 1.206 22 H -0.204 1.204 23 C -0.099 4.099 24 H 0.078 0.922 25 H 0.059 0.941 26 H 0.081 0.919 27 H 0.094 0.906 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.063 0.937 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.093 0.907 37 H 0.041 0.959 38 H 0.101 0.899 39 H 0.076 0.924 40 H 0.095 0.905 41 H 0.042 0.958 42 H 0.071 0.929 43 H 0.064 0.936 44 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -5.817 -9.274 -15.281 18.797 hybrid contribution 1.735 0.659 0.971 2.095 sum -4.081 -8.615 -14.310 17.194 Atomic orbital electron populations 1.21778 0.95662 1.01624 1.01512 1.21624 0.96023 0.95843 1.01716 1.20920 0.93796 0.96858 0.97164 0.93162 1.21594 1.00593 0.98485 0.94587 1.21542 0.94938 1.01142 0.97534 1.21500 0.96465 1.00351 0.96975 1.21556 0.99588 0.99842 0.93846 1.21012 0.96426 0.98245 0.93238 0.94050 1.22741 0.96653 0.98501 0.92284 1.68480 1.45885 1.04281 1.01451 1.23891 0.98092 0.97862 0.91923 1.20294 0.95708 0.91667 0.92243 1.21464 1.06006 0.93636 1.35960 0.92489 1.25819 1.00192 0.95887 0.96576 1.70104 1.38844 0.99805 1.47335 0.85523 0.79588 0.78327 0.78333 1.18865 1.20611 1.20447 1.23709 0.93967 0.93001 0.99241 0.92186 0.94114 0.91939 0.90607 0.93021 0.91235 0.93679 0.90802 0.91320 0.90621 0.93182 0.92751 0.90658 0.95949 0.89897 0.92391 0.90461 0.95850 0.92878 0.93628 0.93953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.04 9.67 71.98 0.70 -2.34 16 2 C -0.11 -2.61 4.48 30.60 0.14 -2.47 16 3 C -0.07 -1.84 2.06 -10.79 -0.02 -1.86 16 4 H 0.05 1.67 7.70 -2.39 -0.02 1.66 16 5 C -0.12 -2.60 5.21 30.59 0.16 -2.44 16 6 C -0.11 -2.08 5.65 30.59 0.17 -1.91 16 7 C -0.12 -2.26 5.92 30.59 0.18 -2.08 16 8 C -0.11 -2.51 4.93 30.59 0.15 -2.36 16 9 C -0.07 -2.05 2.02 -10.80 -0.02 -2.07 16 10 H 0.04 1.41 7.67 -2.39 -0.02 1.40 16 11 C 0.03 0.89 3.90 86.30 0.34 1.23 16 12 N -0.48 -19.47 5.61 -906.99 -5.09 -24.56 16 13 C 0.01 0.47 7.54 86.41 0.65 1.12 16 14 C 0.02 1.04 3.59 -10.90 -0.04 1.00 16 15 C -0.53 -29.78 8.77 25.60 0.22 -29.55 16 16 H 0.06 3.11 7.81 -2.91 -0.02 3.08 16 17 C 0.01 0.81 5.46 84.65 0.46 1.27 16 18 N -0.92 -54.90 13.29 21.44 0.28 -54.62 16 19 Si 0.96 43.83 29.54 68.60 2.03 45.86 16 20 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 21 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 22 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 23 C 0.03 1.45 6.90 86.34 0.60 2.04 16 24 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.06 1.13 6.56 -2.39 -0.02 1.12 16 27 H 0.08 1.48 4.83 -2.39 -0.01 1.46 16 28 H 0.05 1.31 6.11 -2.39 -0.01 1.30 16 29 H 0.07 1.43 6.56 -2.39 -0.02 1.41 16 30 H 0.04 1.12 8.14 -2.39 -0.02 1.11 16 31 H 0.07 1.21 6.32 -2.39 -0.02 1.20 16 32 H 0.07 1.08 8.14 -2.38 -0.02 1.07 16 33 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 36 H 0.07 1.53 6.54 -2.39 -0.02 1.52 16 37 H 0.02 0.79 7.68 -2.39 -0.02 0.77 16 38 H 0.08 2.49 6.16 -2.39 -0.01 2.48 16 39 H 0.06 2.41 7.83 -2.39 -0.02 2.39 16 40 H 0.08 3.07 8.14 -2.39 -0.02 3.05 16 41 H 0.02 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 43 H 0.05 2.32 8.14 -2.39 -0.02 2.31 16 44 H 0.04 2.08 7.65 -2.39 -0.02 2.07 16 Total: -1.00 -60.04 325.02 1.85 -58.19 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: 0.94 Total: 15.54 kcal Atomic # 6 Polarization: -44.10 SS G_CDS: 3.68 Total: -40.42 kcal Atomic # 7 Polarization: -74.38 SS G_CDS: -4.80 Total: -79.18 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -60.04 1.85 -58.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600181382.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.283 kcal (2) G-P(sol) polarization free energy of solvation -60.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds