Wall clock time and date at job start Mon Mar 30 2020 07:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50701 * 120.00217 * 2 1 4 4 C 1.52997 * 109.47090 * 124.99855 * 3 2 1 5 5 H 1.09001 * 109.47053 * 55.00201 * 4 3 2 6 6 C 1.52999 * 109.47260 * 295.00491 * 4 3 2 7 7 C 1.52998 * 109.46942 * 180.02562 * 6 4 3 8 8 C 1.52994 * 109.47593 * 59.99673 * 7 6 4 9 9 C 1.52999 * 109.47244 * 300.00143 * 8 7 6 10 10 C 1.52997 * 109.47260 * 59.99668 * 9 8 7 11 11 H 1.08998 * 109.47513 * 180.02562 * 10 9 8 12 12 N 1.46910 * 109.47292 * 59.99981 * 10 9 8 13 13 C 1.46899 * 110.99558 * 85.51742 * 12 10 9 14 14 H 1.08998 * 109.47369 * 30.59441 * 13 12 10 15 15 C 1.50706 * 109.46943 * 270.59317 * 13 12 10 16 16 H 1.07999 * 119.99949 * 0.02562 * 15 13 12 17 17 C 1.37884 * 119.99724 * 180.02562 * 15 13 12 18 18 N 1.31510 * 119.99618 * 180.02562 * 17 15 13 19 19 Si 1.86793 * 119.99943 * 0.02562 * 17 15 13 20 20 H 1.48499 * 109.47364 * 89.99754 * 19 17 15 21 21 H 1.48499 * 109.47165 * 209.99934 * 19 17 15 22 22 H 1.48506 * 109.47384 * 329.99774 * 19 17 15 23 23 C 1.52997 * 109.47029 * 150.59830 * 13 12 10 24 24 C 1.52999 * 109.47248 * 295.27254 * 23 13 12 25 25 H 1.08003 * 119.99851 * 179.97438 * 1 2 3 26 26 H 1.08002 * 119.99944 * 0.02562 * 1 2 3 27 27 H 1.08000 * 119.99663 * 180.02562 * 2 1 3 28 28 H 1.09008 * 109.46380 * 5.00040 * 3 2 1 29 29 H 1.08999 * 109.47017 * 245.00610 * 3 2 1 30 30 H 1.09001 * 109.46851 * 299.99833 * 6 4 3 31 31 H 1.08999 * 109.47572 * 59.99744 * 6 4 3 32 32 H 1.09001 * 109.47040 * 299.99508 * 7 6 4 33 33 H 1.09006 * 109.47028 * 180.02562 * 7 6 4 34 34 H 1.09002 * 109.47457 * 179.97438 * 8 7 6 35 35 H 1.09001 * 109.47062 * 59.99849 * 8 7 6 36 36 H 1.09003 * 109.47253 * 179.97438 * 9 8 7 37 37 H 1.09001 * 109.46851 * 299.99835 * 9 8 7 38 38 H 1.00895 * 110.99521 * 321.56601 * 12 10 9 39 39 H 0.97003 * 119.99776 * 180.02562 * 18 17 15 40 40 H 1.09005 * 109.46946 * 55.27023 * 23 13 12 41 41 H 1.08997 * 109.47312 * 175.26614 * 23 13 12 42 42 H 1.08999 * 109.47433 * 55.26102 * 24 23 13 43 43 H 1.08998 * 109.47080 * 175.26959 * 24 23 13 44 44 H 1.09005 * 109.46678 * 295.26819 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 1 3.6827 0.4572 1.1403 6 6 2.2451 1.3217 2.4918 7 6 3.2166 1.3503 3.6734 8 6 4.0687 2.6190 3.6026 9 6 4.8587 2.6304 2.2924 10 6 3.8872 2.6018 1.1108 11 1 4.4500 2.6094 0.1773 12 7 3.0139 3.7818 1.1662 13 6 3.6493 4.9377 0.5195 14 1 4.3018 4.5923 -0.2823 15 6 4.4616 5.6982 1.5359 16 1 4.5021 5.3567 2.5597 17 6 5.1530 6.8299 1.1587 18 7 5.8623 7.4932 2.0456 19 14 5.0823 7.4209 -0.6118 20 1 3.9457 8.3626 -0.7744 21 1 6.3510 8.1126 -0.9539 22 1 4.8939 6.2572 -1.5150 23 6 2.5703 5.8546 -0.0602 24 6 1.8222 5.1205 -1.1748 25 1 -0.5400 -0.9354 -0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3585 2.1316 0.0896 29 1 2.6213 1.4026 -0.9314 30 1 1.5974 2.1975 2.5331 31 1 1.6377 0.4180 2.5421 32 1 3.8645 0.4747 3.6323 33 1 2.6538 1.3418 4.6069 34 1 4.7605 2.6396 4.4446 35 1 3.4207 3.4946 3.6437 36 1 5.4654 3.5345 2.2417 37 1 5.5066 1.7548 2.2513 38 1 2.7560 3.9963 2.1177 39 1 6.3484 8.2896 1.7803 40 1 1.8688 6.1326 0.7263 41 1 3.0362 6.7527 -0.4657 42 1 1.4274 4.1804 -0.7894 43 1 1.0000 5.7413 -1.5305 44 1 2.5064 4.9167 -1.9985 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692276007.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:51 Heat of formation + Delta-G solvation = -7.580333 kcal Electronic energy + Delta-G solvation = -20085.087967 eV Core-core repulsion = 17422.570866 eV Total energy + Delta-G solvation = -2662.517101 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.19216 -35.65415 -34.55895 -32.12897 -31.46837 -30.56926 -28.56189 -26.53951 -25.27528 -22.45072 -21.97373 -21.19767 -19.86312 -19.44477 -18.32672 -16.85105 -15.48392 -15.02816 -14.84355 -14.46592 -13.98587 -13.69479 -13.27980 -12.99814 -12.95642 -12.56698 -12.53026 -11.94812 -11.72533 -11.63442 -11.44843 -11.38269 -11.17749 -10.85834 -10.75325 -10.58706 -10.48596 -10.16205 -10.09762 -9.83771 -9.68840 -9.44740 -9.32709 -9.08729 -8.96710 -8.52685 -7.25472 -6.10284 -4.09913 2.45982 3.27258 3.38093 3.40068 4.39171 5.01665 5.04609 5.21007 5.23527 5.30217 5.37834 5.45647 5.66227 5.79840 5.86548 5.96439 6.00759 6.03775 6.06912 6.08659 6.10533 6.13591 6.24667 6.29411 6.33024 6.49234 6.52714 6.65477 6.68794 6.72079 6.75896 6.80985 6.83879 6.92502 7.00999 7.06062 7.10020 7.20470 7.34602 7.61366 8.14123 8.45137 8.58087 8.94001 9.54171 11.02146 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.022575 B = 0.007766 C = 0.006224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.007131 B = 3604.556533 C = 4497.679009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.141 4.141 3 C -0.083 4.083 4 C -0.067 4.067 5 H 0.058 0.942 6 C -0.108 4.108 7 C -0.118 4.118 8 C -0.115 4.115 9 C -0.150 4.150 10 C 0.101 3.899 11 H 0.066 0.934 12 N -0.672 5.672 13 C 0.183 3.817 14 H 0.029 0.971 15 C -0.540 4.540 16 H 0.078 0.922 17 C 0.072 3.928 18 N -0.899 5.899 19 Si 0.888 3.112 20 H -0.280 1.280 21 H -0.301 1.301 22 H -0.265 1.265 23 C -0.115 4.115 24 C -0.144 4.144 25 H 0.088 0.912 26 H 0.095 0.905 27 H 0.099 0.901 28 H 0.083 0.917 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.067 0.933 36 H 0.088 0.912 37 H 0.046 0.954 38 H 0.336 0.664 39 H 0.262 0.738 40 H 0.056 0.944 41 H 0.042 0.958 42 H 0.065 0.935 43 H 0.031 0.969 44 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.011 -12.518 -2.003 14.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.159 4.159 3 C -0.120 4.120 4 C -0.086 4.086 5 H 0.076 0.924 6 C -0.146 4.146 7 C -0.155 4.155 8 C -0.153 4.153 9 C -0.189 4.189 10 C -0.010 4.010 11 H 0.084 0.916 12 N -0.303 5.303 13 C 0.074 3.926 14 H 0.047 0.953 15 C -0.578 4.578 16 H 0.096 0.904 17 C -0.130 4.130 18 N -0.537 5.537 19 Si 0.719 3.281 20 H -0.207 1.207 21 H -0.229 1.229 22 H -0.190 1.190 23 C -0.153 4.153 24 C -0.201 4.201 25 H 0.106 0.894 26 H 0.114 0.886 27 H 0.117 0.883 28 H 0.102 0.898 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.107 0.893 37 H 0.065 0.935 38 H 0.156 0.844 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.060 0.940 42 H 0.084 0.916 43 H 0.050 0.950 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -7.262 -12.536 -2.537 14.708 hybrid contribution 0.824 0.750 -0.202 1.132 sum -6.438 -11.787 -2.740 13.707 Atomic orbital electron populations 1.23763 0.96081 1.01262 1.03467 1.23119 0.96021 0.98919 0.97855 1.20748 0.98629 0.94585 0.98023 1.21092 0.96144 0.97266 0.94130 0.92351 1.21513 0.97632 1.01501 0.93913 1.21549 0.97952 0.98152 0.97866 1.21459 0.98623 0.97575 0.97660 1.22248 0.98843 1.02658 0.95142 1.21405 0.91761 0.90675 0.97130 0.91618 1.60829 1.41682 1.04716 1.23109 1.19611 0.90732 0.87931 0.94347 0.95331 1.21809 1.28611 1.10218 0.97211 0.90436 1.25009 0.94738 0.96325 0.96974 1.69916 1.31413 1.18333 1.34023 0.86846 0.75906 0.79254 0.86111 1.20666 1.22858 1.19047 1.21816 0.98740 0.97868 0.96890 1.21758 0.98898 1.00994 0.98494 0.89397 0.88641 0.88337 0.89837 0.91764 0.91257 0.93040 0.92917 0.92943 0.92891 0.91497 0.89304 0.93539 0.84392 0.92772 0.92570 0.94005 0.91603 0.95029 0.94485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.33 14.32 29.01 0.42 -1.92 16 2 C -0.14 -1.67 8.50 -36.03 -0.31 -1.97 16 3 C -0.08 -1.11 4.90 -27.88 -0.14 -1.25 16 4 C -0.07 -0.94 2.00 -90.62 -0.18 -1.12 16 5 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 6 C -0.11 -1.45 4.78 -26.73 -0.13 -1.58 16 7 C -0.12 -1.59 5.92 -26.74 -0.16 -1.74 16 8 C -0.12 -1.84 5.67 -26.73 -0.15 -1.99 16 9 C -0.15 -2.60 5.16 -26.73 -0.14 -2.74 16 10 C 0.10 1.71 2.30 -67.71 -0.16 1.55 16 11 H 0.07 1.19 7.38 -51.93 -0.38 0.81 16 12 N -0.67 -12.47 4.25 -100.95 -0.43 -12.90 16 13 C 0.18 4.06 1.58 -68.86 -0.11 3.95 16 14 H 0.03 0.68 6.40 -51.93 -0.33 0.35 16 15 C -0.54 -14.15 7.67 -34.43 -0.26 -14.41 16 16 H 0.08 2.18 7.14 -52.49 -0.37 1.81 16 17 C 0.07 2.01 5.45 -17.82 -0.10 1.91 16 18 N -0.90 -26.84 13.96 55.43 0.77 -26.07 16 19 Si 0.89 21.85 24.41 -169.99 -4.15 17.70 16 20 H -0.28 -6.79 6.83 56.52 0.39 -6.41 16 21 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 22 H -0.27 -6.30 6.53 56.52 0.37 -5.93 16 23 C -0.12 -2.46 5.11 -26.73 -0.14 -2.59 16 24 C -0.14 -2.60 9.85 37.16 0.37 -2.24 16 25 H 0.09 0.85 8.06 -52.48 -0.42 0.43 16 26 H 0.10 1.08 7.84 -52.49 -0.41 0.67 16 27 H 0.10 1.07 8.06 -52.49 -0.42 0.65 16 28 H 0.08 1.23 6.77 -51.92 -0.35 0.88 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.07 1.01 7.22 -51.93 -0.38 0.64 16 31 H 0.05 0.65 7.38 -51.93 -0.38 0.27 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.07 1.17 6.25 -51.93 -0.32 0.84 16 36 H 0.09 1.88 6.18 -51.93 -0.32 1.56 16 37 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.34 6.47 5.16 -39.29 -0.20 6.27 16 39 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 40 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.04 0.96 3.21 -51.93 -0.17 0.80 16 42 H 0.07 1.12 6.98 -51.93 -0.36 0.76 16 43 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 321.91 15.07 4.85 4.85 Total: -1.00 -27.05 321.91 -7.96 -35.01 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -7.82 Total: 7.55 kcal Atomic # 6 Polarization: -24.96 SS G_CDS: -1.18 Total: -26.15 kcal Atomic # 7 Polarization: -39.31 SS G_CDS: 0.34 Total: -38.96 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.15 Total: 17.70 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -27.05 -7.96 -35.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692276007.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.431 kcal (2) G-P(sol) polarization free energy of solvation -27.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds