Wall clock time and date at job start Mon Mar 30 2020 07:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47499 * 2 1 4 4 H 1.08999 * 109.47304 * 183.03164 * 3 2 1 5 5 C 1.50699 * 109.46799 * 63.03236 * 3 2 1 6 6 H 1.08001 * 120.00071 * 241.65038 * 5 3 2 7 7 C 1.37878 * 120.00239 * 61.64733 * 5 3 2 8 8 N 1.31511 * 120.00222 * 197.40778 * 7 5 3 9 9 Si 1.86801 * 119.99501 * 17.40708 * 7 5 3 10 10 H 1.48501 * 109.47092 * 89.79600 * 9 7 5 11 11 H 1.48504 * 109.47108 * 209.79183 * 9 7 5 12 12 H 1.48504 * 109.47573 * 329.79372 * 9 7 5 13 13 N 1.46900 * 109.46948 * 303.03806 * 3 2 1 14 14 C 1.46849 * 111.00040 * 301.64049 * 13 3 2 15 15 C 1.53035 * 109.52700 * 174.16250 * 14 13 3 16 16 C 1.53123 * 109.27358 * 59.17914 * 15 14 13 17 17 C 1.52998 * 109.57150 * 182.40961 * 16 15 14 18 18 C 1.53787 * 113.61809 * 278.85516 * 17 16 15 19 19 C 1.53955 * 87.02095 * 220.04720 * 18 17 16 20 20 C 1.53777 * 113.61629 * 181.24631 * 17 16 15 21 21 C 1.53110 * 109.16387 * 302.34834 * 16 15 14 22 22 C 1.46851 * 110.99882 * 177.43589 * 13 3 2 23 23 H 1.08998 * 109.47260 * 54.78270 * 1 2 3 24 24 H 1.08999 * 109.47184 * 174.78009 * 1 2 3 25 25 H 1.08996 * 109.47195 * 294.78244 * 1 2 3 26 26 H 1.09008 * 109.47499 * 240.00123 * 2 1 3 27 27 H 1.09002 * 109.47570 * 120.00445 * 2 1 3 28 28 H 0.97002 * 119.99640 * 179.97438 * 8 7 5 29 29 H 1.08998 * 109.46296 * 294.18481 * 14 13 3 30 30 H 1.09007 * 109.45688 * 54.14573 * 14 13 3 31 31 H 1.09008 * 109.50205 * 299.24733 * 15 14 13 32 32 H 1.08992 * 109.53726 * 179.14710 * 15 14 13 33 33 H 1.08996 * 109.52074 * 62.25851 * 16 15 14 34 34 H 1.09007 * 112.85455 * 50.04930 * 17 16 15 35 35 H 1.09000 * 113.61173 * 334.56852 * 18 17 16 36 36 H 1.09001 * 113.61534 * 105.46870 * 18 17 16 37 37 H 1.08994 * 113.53966 * 270.81046 * 19 18 17 38 38 H 1.09001 * 113.74270 * 139.94033 * 19 18 17 39 39 H 1.08993 * 113.61880 * 254.53178 * 20 17 16 40 40 H 1.09000 * 113.61315 * 25.34927 * 20 17 16 41 41 H 1.09005 * 109.50611 * 297.71064 * 21 16 15 42 42 H 1.09002 * 109.53723 * 177.61513 * 21 16 15 43 43 H 1.08999 * 109.46562 * 305.85608 * 22 13 3 44 44 H 1.08998 * 109.46189 * 65.81999 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1287 1.4429 -0.0543 5 6 1.6000 2.1308 1.2663 6 1 0.9536 2.9944 1.2149 7 6 2.0226 1.6580 2.4906 8 7 1.3925 2.0175 3.5876 9 14 3.4903 0.5068 2.5911 10 1 4.7345 1.3030 2.7430 11 1 3.3334 -0.3943 3.7611 12 1 3.5697 -0.3038 1.3493 13 7 1.4914 2.1558 -1.1611 14 6 1.8680 1.4895 -2.4143 15 6 1.1624 2.1717 -3.5885 16 6 1.5664 3.6481 -3.6321 17 6 0.8185 4.3507 -4.7670 18 6 1.4564 4.1373 -6.1500 19 6 1.1388 5.6165 -6.4356 20 6 1.1794 5.8382 -4.9144 21 6 1.2073 4.3071 -2.2976 22 6 1.9115 3.5630 -1.1609 23 1 -0.3634 0.5926 -0.8395 24 1 -0.3633 -1.0234 -0.0935 25 1 -0.3633 0.4307 0.9330 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 1.6897 1.6845 4.4488 29 1 2.9474 1.5560 -2.5508 30 1 1.5714 0.4414 -2.3716 31 1 0.0828 2.0935 -3.4594 32 1 1.4536 1.6869 -4.5202 33 1 2.6404 3.7270 -3.8001 34 1 -0.2548 4.1617 -4.7475 35 1 2.5237 3.9198 -6.1097 36 1 0.9051 3.4415 -6.7825 37 1 0.1532 5.7734 -6.8736 38 1 1.9294 6.1389 -6.9743 39 1 0.4050 6.5135 -4.5508 40 1 2.1703 6.0868 -4.5343 41 1 0.1284 4.2625 -2.1483 42 1 1.5307 5.3480 -2.3064 43 1 1.6466 4.0210 -0.2079 44 1 2.9906 3.6198 -1.3033 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693090318.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:07 Heat of formation + Delta-G solvation = 8.201932 kcal Electronic energy + Delta-G solvation = -19705.196905 eV Core-core repulsion = 17043.364174 eV Total energy + Delta-G solvation = -2661.832731 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.59168 -37.81368 -34.63525 -32.00781 -30.95729 -30.15449 -27.17262 -25.65037 -25.34143 -23.27007 -22.22472 -21.65741 -19.64393 -19.42475 -18.77734 -16.40718 -15.80017 -15.35951 -14.84163 -14.31199 -14.03154 -13.55658 -13.51902 -13.14208 -12.91575 -12.57743 -12.45781 -12.28692 -12.00149 -11.78476 -11.62275 -11.16827 -10.98092 -10.69394 -10.66276 -10.52100 -10.46047 -10.39355 -10.31290 -10.03405 -9.94070 -9.72887 -9.36173 -9.21087 -8.87998 -8.36002 -7.20682 -6.06864 -3.97717 3.29002 3.38467 3.41413 4.44863 4.59922 4.64091 4.71950 4.84889 4.85901 5.24218 5.29657 5.34622 5.49862 5.59834 5.72817 5.73729 5.79495 5.83597 5.92310 5.94094 6.00169 6.11858 6.14516 6.17736 6.26637 6.30226 6.38147 6.39199 6.48954 6.50724 6.53546 6.64487 6.82189 6.85770 6.87735 7.06011 7.18778 7.27090 7.55058 7.76186 8.06270 8.20551 8.71880 9.04828 9.60456 11.05810 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.036940 B = 0.005367 C = 0.005122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.799050 B = 5216.137008 C = 5464.866116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.116 4.116 3 C 0.190 3.810 4 H -0.012 1.012 5 C -0.504 4.504 6 H 0.080 0.920 7 C 0.077 3.923 8 N -0.890 5.890 9 Si 0.856 3.144 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.255 1.255 13 N -0.518 5.518 14 C 0.049 3.951 15 C -0.105 4.105 16 C -0.076 4.076 17 C -0.101 4.101 18 C -0.137 4.137 19 C -0.144 4.144 20 C -0.136 4.136 21 C -0.108 4.108 22 C 0.063 3.937 23 H 0.056 0.944 24 H 0.018 0.982 25 H 0.065 0.935 26 H 0.027 0.973 27 H 0.053 0.947 28 H 0.262 0.738 29 H 0.016 0.984 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.054 0.946 33 H 0.061 0.939 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.062 0.938 37 H 0.076 0.924 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.079 0.921 41 H 0.066 0.934 42 H 0.056 0.944 43 H 0.090 0.910 44 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.215 3.079 -16.799 17.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.154 4.154 3 C 0.083 3.917 4 H 0.005 0.995 5 C -0.542 4.542 6 H 0.098 0.902 7 C -0.125 4.125 8 N -0.528 5.528 9 Si 0.684 3.316 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.179 1.179 13 N -0.242 5.242 14 C -0.080 4.080 15 C -0.143 4.143 16 C -0.095 4.095 17 C -0.119 4.119 18 C -0.175 4.175 19 C -0.182 4.182 20 C -0.173 4.173 21 C -0.145 4.145 22 C -0.065 4.065 23 H 0.075 0.925 24 H 0.037 0.963 25 H 0.084 0.916 26 H 0.045 0.955 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.034 0.966 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.105 0.895 35 H 0.096 0.904 36 H 0.081 0.919 37 H 0.094 0.906 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.097 0.903 41 H 0.085 0.915 42 H 0.075 0.925 43 H 0.108 0.892 44 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -0.307 3.045 -16.547 16.828 hybrid contribution 1.811 -0.663 0.201 1.939 sum 1.504 2.382 -16.346 16.587 Atomic orbital electron populations 1.21472 0.95667 0.97833 1.03249 1.21938 0.97121 0.97747 0.98589 1.19578 0.91614 0.90999 0.89502 0.99473 1.20841 1.30680 1.14878 0.87795 0.90167 1.24825 0.96232 0.95692 0.95735 1.69988 1.38536 1.45875 0.98384 0.87363 0.84473 0.81682 0.78128 1.20901 1.21433 1.17924 1.61843 1.59810 1.01417 1.01169 1.22112 0.96273 0.98741 0.90848 1.21563 1.01119 0.94653 0.96953 1.21189 0.98790 0.95089 0.94412 1.22570 0.99875 0.95274 0.94224 1.22976 1.00871 0.96319 0.97298 1.22846 1.01372 0.97096 0.96874 1.22905 1.01817 0.96926 0.95699 1.21616 1.01394 0.97909 0.93631 1.21977 0.95581 0.89719 0.99192 0.92533 0.96260 0.91603 0.95474 0.92831 0.92800 0.96571 0.91033 0.91474 0.92750 0.92098 0.89490 0.90408 0.91928 0.90576 0.91957 0.91757 0.90269 0.91520 0.92537 0.89177 0.96700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.63 9.51 37.15 0.35 -2.28 16 2 C -0.12 -2.57 4.49 -26.73 -0.12 -2.69 16 3 C 0.19 4.48 1.32 -68.86 -0.09 4.39 16 4 H -0.01 -0.30 6.98 -51.93 -0.36 -0.66 16 5 C -0.50 -13.71 7.24 -34.44 -0.25 -13.96 16 6 H 0.08 2.38 6.83 -52.49 -0.36 2.03 16 7 C 0.08 2.18 5.31 -17.82 -0.09 2.09 16 8 N -0.89 -26.66 13.96 55.43 0.77 -25.89 16 9 Si 0.86 21.16 25.81 -169.99 -4.39 16.77 16 10 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 12 H -0.25 -5.99 5.42 56.52 0.31 -5.68 16 13 N -0.52 -10.58 3.54 -228.08 -0.81 -11.38 16 14 C 0.05 0.85 5.13 -3.83 -0.02 0.83 16 15 C -0.11 -1.50 5.37 -26.65 -0.14 -1.64 16 16 C -0.08 -1.03 1.98 -90.50 -0.18 -1.20 16 17 C -0.10 -1.14 3.12 -89.81 -0.28 -1.42 16 18 C -0.14 -1.37 7.63 -25.82 -0.20 -1.56 16 19 C -0.14 -1.33 8.09 -25.82 -0.21 -1.54 16 20 C -0.14 -1.41 6.81 -25.92 -0.18 -1.58 16 21 C -0.11 -1.66 5.15 -26.66 -0.14 -1.79 16 22 C 0.06 1.22 5.23 -3.83 -0.02 1.20 16 23 H 0.06 1.16 7.30 -51.93 -0.38 0.78 16 24 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 25 H 0.06 1.57 7.49 -51.93 -0.39 1.18 16 26 H 0.03 0.54 6.42 -51.92 -0.33 0.21 16 27 H 0.05 1.25 4.64 -51.93 -0.24 1.01 16 28 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 29 H 0.02 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 1.24 6.03 -51.93 -0.31 0.93 16 31 H 0.07 1.00 8.14 -51.92 -0.42 0.57 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.84 7.98 -51.93 -0.41 0.43 16 34 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.08 0.78 7.99 -51.93 -0.41 0.37 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 41 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.06 0.79 7.59 -51.93 -0.39 0.40 16 43 H 0.09 1.96 6.16 -51.93 -0.32 1.64 16 44 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 LS Contribution 320.66 15.07 4.83 4.83 Total: -1.00 -28.22 320.66 -9.37 -37.59 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -8.22 Total: -0.76 kcal Atomic # 6 Polarization: -19.60 SS G_CDS: -1.56 Total: -21.16 kcal Atomic # 7 Polarization: -37.24 SS G_CDS: -0.03 Total: -37.27 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.39 Total: 16.77 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.22 -9.37 -37.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693090318.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.790 kcal (2) G-P(sol) polarization free energy of solvation -28.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds