Wall clock time and date at job start Mon Mar 30 2020 07:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47499 * 2 1 4 4 H 1.08999 * 109.47304 * 183.03164 * 3 2 1 5 5 C 1.50699 * 109.46799 * 63.03236 * 3 2 1 6 6 H 1.08001 * 120.00071 * 241.65038 * 5 3 2 7 7 C 1.37878 * 120.00239 * 61.64733 * 5 3 2 8 8 N 1.31511 * 120.00222 * 197.40778 * 7 5 3 9 9 Si 1.86801 * 119.99501 * 17.40708 * 7 5 3 10 10 H 1.48501 * 109.47092 * 89.79600 * 9 7 5 11 11 H 1.48504 * 109.47108 * 209.79183 * 9 7 5 12 12 H 1.48504 * 109.47573 * 329.79372 * 9 7 5 13 13 N 1.46900 * 109.46948 * 303.03806 * 3 2 1 14 14 C 1.46849 * 111.00040 * 301.64049 * 13 3 2 15 15 C 1.53035 * 109.52700 * 174.16250 * 14 13 3 16 16 C 1.53123 * 109.27358 * 59.17914 * 15 14 13 17 17 C 1.52998 * 109.57150 * 182.40961 * 16 15 14 18 18 C 1.53787 * 113.61809 * 278.85516 * 17 16 15 19 19 C 1.53955 * 87.02095 * 220.04720 * 18 17 16 20 20 C 1.53777 * 113.61629 * 181.24631 * 17 16 15 21 21 C 1.53110 * 109.16387 * 302.34834 * 16 15 14 22 22 C 1.46851 * 110.99882 * 177.43589 * 13 3 2 23 23 H 1.08998 * 109.47260 * 54.78270 * 1 2 3 24 24 H 1.08999 * 109.47184 * 174.78009 * 1 2 3 25 25 H 1.08996 * 109.47195 * 294.78244 * 1 2 3 26 26 H 1.09008 * 109.47499 * 240.00123 * 2 1 3 27 27 H 1.09002 * 109.47570 * 120.00445 * 2 1 3 28 28 H 0.97002 * 119.99640 * 179.97438 * 8 7 5 29 29 H 1.08998 * 109.46296 * 294.18481 * 14 13 3 30 30 H 1.09007 * 109.45688 * 54.14573 * 14 13 3 31 31 H 1.09008 * 109.50205 * 299.24733 * 15 14 13 32 32 H 1.08992 * 109.53726 * 179.14710 * 15 14 13 33 33 H 1.08996 * 109.52074 * 62.25851 * 16 15 14 34 34 H 1.09007 * 112.85455 * 50.04930 * 17 16 15 35 35 H 1.09000 * 113.61173 * 334.56852 * 18 17 16 36 36 H 1.09001 * 113.61534 * 105.46870 * 18 17 16 37 37 H 1.08994 * 113.53966 * 270.81046 * 19 18 17 38 38 H 1.09001 * 113.74270 * 139.94033 * 19 18 17 39 39 H 1.08993 * 113.61880 * 254.53178 * 20 17 16 40 40 H 1.09000 * 113.61315 * 25.34927 * 20 17 16 41 41 H 1.09005 * 109.50611 * 297.71064 * 21 16 15 42 42 H 1.09002 * 109.53723 * 177.61513 * 21 16 15 43 43 H 1.08999 * 109.46562 * 305.85608 * 22 13 3 44 44 H 1.08998 * 109.46189 * 65.81999 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1287 1.4429 -0.0543 5 6 1.6000 2.1308 1.2663 6 1 0.9536 2.9944 1.2149 7 6 2.0226 1.6580 2.4906 8 7 1.3925 2.0175 3.5876 9 14 3.4903 0.5068 2.5911 10 1 4.7345 1.3030 2.7430 11 1 3.3334 -0.3943 3.7611 12 1 3.5697 -0.3038 1.3493 13 7 1.4914 2.1558 -1.1611 14 6 1.8680 1.4895 -2.4143 15 6 1.1624 2.1717 -3.5885 16 6 1.5664 3.6481 -3.6321 17 6 0.8185 4.3507 -4.7670 18 6 1.4564 4.1373 -6.1500 19 6 1.1388 5.6165 -6.4356 20 6 1.1794 5.8382 -4.9144 21 6 1.2073 4.3071 -2.2976 22 6 1.9115 3.5630 -1.1609 23 1 -0.3634 0.5926 -0.8395 24 1 -0.3633 -1.0234 -0.0935 25 1 -0.3633 0.4307 0.9330 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 1.6897 1.6845 4.4488 29 1 2.9474 1.5560 -2.5508 30 1 1.5714 0.4414 -2.3716 31 1 0.0828 2.0935 -3.4594 32 1 1.4536 1.6869 -4.5202 33 1 2.6404 3.7270 -3.8001 34 1 -0.2548 4.1617 -4.7475 35 1 2.5237 3.9198 -6.1097 36 1 0.9051 3.4415 -6.7825 37 1 0.1532 5.7734 -6.8736 38 1 1.9294 6.1389 -6.9743 39 1 0.4050 6.5135 -4.5508 40 1 2.1703 6.0868 -4.5343 41 1 0.1284 4.2625 -2.1483 42 1 1.5307 5.3480 -2.3064 43 1 1.6466 4.0210 -0.2079 44 1 2.9906 3.6198 -1.3033 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693090318.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:06 Heat of formation + Delta-G solvation = -6.983874 kcal Electronic energy + Delta-G solvation = -19705.855411 eV Core-core repulsion = 17043.364174 eV Total energy + Delta-G solvation = -2662.491237 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.71758 -39.12570 -36.20190 -34.02442 -32.45411 -31.57799 -28.94150 -26.70444 -26.46730 -24.96380 -23.56623 -23.04010 -21.22652 -20.48808 -20.03882 -18.46711 -17.37041 -16.44046 -16.09193 -15.72950 -15.63123 -15.15062 -14.98025 -14.63079 -14.46223 -14.25967 -13.78805 -13.30343 -13.22865 -13.12730 -12.92206 -12.83534 -12.50857 -12.40360 -12.07791 -11.95966 -11.91614 -11.77036 -11.57216 -11.45740 -11.23884 -11.11816 -10.98941 -10.63996 -10.50936 -10.44502 -8.87428 -8.26405 -6.20450 1.31016 1.35898 1.43751 2.36109 3.05492 3.31161 3.70257 3.80487 3.86243 4.04093 4.11413 4.26267 4.32576 4.42488 4.47800 4.53150 4.61480 4.64622 4.70311 4.77931 4.83414 4.94017 4.96698 5.00742 5.08104 5.09147 5.10683 5.13847 5.17629 5.21990 5.27469 5.29854 5.33173 5.41023 5.45253 5.50826 5.60319 5.74846 5.77441 5.83642 6.12836 6.49348 6.80824 6.84000 7.41059 8.90011 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.036940 B = 0.005367 C = 0.005122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.799050 B = 5216.137008 C = 5464.866116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.116 4.116 3 C 0.193 3.807 4 H -0.022 1.022 5 C -0.497 4.497 6 H 0.039 0.961 7 C 0.024 3.976 8 N -0.938 5.938 9 Si 0.915 3.085 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.231 1.231 13 N -0.527 5.527 14 C 0.047 3.953 15 C -0.098 4.098 16 C -0.069 4.069 17 C -0.102 4.102 18 C -0.133 4.133 19 C -0.138 4.138 20 C -0.140 4.140 21 C -0.097 4.097 22 C 0.065 3.935 23 H 0.060 0.940 24 H 0.049 0.951 25 H 0.027 0.973 26 H 0.057 0.943 27 H 0.041 0.959 28 H 0.263 0.737 29 H 0.016 0.984 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.061 0.939 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.076 0.924 41 H 0.057 0.943 42 H 0.069 0.931 43 H 0.052 0.948 44 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.888 2.024 -19.811 19.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.154 4.154 3 C 0.084 3.916 4 H -0.005 1.005 5 C -0.535 4.535 6 H 0.057 0.943 7 C -0.174 4.174 8 N -0.578 5.578 9 Si 0.740 3.260 10 H -0.209 1.209 11 H -0.213 1.213 12 H -0.154 1.154 13 N -0.252 5.252 14 C -0.081 4.081 15 C -0.136 4.136 16 C -0.088 4.088 17 C -0.120 4.120 18 C -0.170 4.170 19 C -0.175 4.175 20 C -0.177 4.177 21 C -0.135 4.135 22 C -0.063 4.063 23 H 0.079 0.921 24 H 0.068 0.932 25 H 0.046 0.954 26 H 0.075 0.925 27 H 0.060 0.940 28 H 0.072 0.928 29 H 0.034 0.966 30 H 0.094 0.906 31 H 0.081 0.919 32 H 0.099 0.901 33 H 0.080 0.920 34 H 0.105 0.895 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.103 0.897 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.094 0.906 41 H 0.076 0.924 42 H 0.087 0.913 43 H 0.070 0.930 44 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges 0.367 1.990 -19.594 19.698 hybrid contribution 1.546 -0.250 1.134 1.933 sum 1.913 1.739 -18.460 18.640 Atomic orbital electron populations 1.21343 0.95051 0.99455 1.01317 1.21895 0.97662 0.96496 0.99380 1.19446 0.90952 0.92030 0.89135 1.00508 1.20996 1.29178 1.13546 0.89806 0.94318 1.25570 0.98722 0.97781 0.95329 1.70118 1.40492 1.48183 0.99051 0.86403 0.80620 0.79962 0.79030 1.20858 1.21255 1.15441 1.61802 1.59851 1.01791 1.01707 1.22235 0.96704 0.99025 0.90141 1.21530 1.00481 0.94957 0.96586 1.21126 0.99130 0.94719 0.93806 1.22536 0.99634 0.95715 0.94107 1.22959 1.00874 0.97052 0.96123 1.22826 1.02178 0.96572 0.95916 1.22929 1.01635 0.96244 0.96906 1.21521 1.00229 0.98324 0.93451 1.21922 0.95747 0.89605 0.99062 0.92112 0.93230 0.95399 0.92454 0.94042 0.92799 0.96550 0.90606 0.91851 0.90104 0.92041 0.89521 0.90327 0.91042 0.89749 0.91115 0.91765 0.90581 0.92423 0.91252 0.92968 0.97081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.70 9.51 71.98 0.68 -4.01 16 2 C -0.12 -4.96 4.49 30.59 0.14 -4.82 16 3 C 0.19 9.05 1.32 44.17 0.06 9.11 16 4 H -0.02 -1.09 6.98 -2.39 -0.02 -1.11 16 5 C -0.50 -28.06 7.24 25.60 0.19 -27.88 16 6 H 0.04 2.46 6.83 -2.91 -0.02 2.44 16 7 C 0.02 1.39 5.31 84.66 0.45 1.84 16 8 N -0.94 -58.42 13.96 21.45 0.30 -58.12 16 9 Si 0.91 43.98 25.81 68.60 1.77 45.75 16 10 H -0.28 -13.46 7.11 99.48 0.71 -12.76 16 11 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 12 H -0.23 -10.17 5.42 99.48 0.54 -9.63 16 13 N -0.53 -21.38 3.54 -875.51 -3.10 -24.48 16 14 C 0.05 1.52 5.13 86.32 0.44 1.96 16 15 C -0.10 -2.52 5.37 30.65 0.16 -2.35 16 16 C -0.07 -1.71 1.98 -10.72 -0.02 -1.73 16 17 C -0.10 -2.02 3.12 -10.27 -0.03 -2.05 16 18 C -0.13 -2.19 7.63 31.18 0.24 -1.95 16 19 C -0.14 -2.10 8.09 31.18 0.25 -1.85 16 20 C -0.14 -2.56 6.81 31.12 0.21 -2.35 16 21 C -0.10 -2.94 5.15 30.64 0.16 -2.79 16 22 C 0.06 2.55 5.23 86.32 0.45 3.00 16 23 H 0.06 2.41 7.30 -2.39 -0.02 2.39 16 24 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 25 H 0.03 1.32 7.49 -2.39 -0.02 1.30 16 26 H 0.06 2.11 6.42 -2.38 -0.02 2.09 16 27 H 0.04 1.86 4.64 -2.39 -0.01 1.85 16 28 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 29 H 0.02 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.08 2.39 6.03 -2.38 -0.01 2.38 16 31 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 32 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.06 1.54 7.98 -2.39 -0.02 1.53 16 34 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 35 H 0.08 1.31 7.99 -2.39 -0.02 1.29 16 36 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.08 1.45 8.10 -2.39 -0.02 1.43 16 41 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 42 H 0.07 1.90 7.59 -2.39 -0.02 1.88 16 43 H 0.05 2.41 6.16 -2.39 -0.01 2.40 16 44 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 Total: -1.00 -62.75 320.66 3.12 -59.63 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: 0.77 Total: 13.11 kcal Atomic # 6 Polarization: -39.26 SS G_CDS: 3.38 Total: -35.89 kcal Atomic # 7 Polarization: -79.80 SS G_CDS: -2.80 Total: -82.60 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 1.77 Total: 45.75 kcal Total: -62.75 3.12 -59.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693090318.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.646 kcal (2) G-P(sol) polarization free energy of solvation -62.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds