Wall clock time and date at job start Mon Mar 30 2020 07:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46909 * 2 1 4 4 H 1.09005 * 109.47169 * 51.43550 * 3 2 1 5 5 C 1.50693 * 109.47340 * 291.43250 * 3 2 1 6 6 H 1.08001 * 120.00371 * 244.56577 * 5 3 2 7 7 C 1.37887 * 119.99966 * 64.56543 * 5 3 2 8 8 N 1.31517 * 119.99724 * 22.14902 * 7 5 3 9 9 Si 1.86799 * 119.99934 * 202.14991 * 7 5 3 10 10 H 1.48500 * 109.47055 * 90.00099 * 9 7 5 11 11 H 1.48498 * 109.46883 * 209.99987 * 9 7 5 12 12 H 1.48499 * 109.47071 * 330.00132 * 9 7 5 13 13 N 1.46896 * 109.46877 * 171.43448 * 3 2 1 14 14 C 1.46847 * 111.00109 * 57.22112 * 13 3 2 15 15 C 1.53042 * 109.52398 * 174.15811 * 14 13 3 16 16 C 1.53121 * 109.27430 * 59.18309 * 15 14 13 17 17 C 1.53119 * 109.16196 * 302.34221 * 16 15 14 18 18 H 1.09003 * 109.50490 * 297.67726 * 17 16 15 19 19 C 1.53002 * 109.50464 * 177.59674 * 17 16 15 20 20 C 1.53777 * 113.61285 * 157.49806 * 19 17 16 21 21 C 1.53782 * 87.07952 * 220.01929 * 20 19 17 22 22 C 1.53781 * 87.08288 * 25.43293 * 21 20 19 23 23 C 1.46855 * 111.00202 * 293.01450 * 13 3 2 24 24 H 1.08999 * 109.47326 * 306.28129 * 1 2 3 25 25 H 1.09001 * 109.47042 * 186.28467 * 1 2 3 26 26 H 1.08997 * 109.47306 * 66.28401 * 1 2 3 27 27 H 1.09003 * 109.46843 * 120.00222 * 2 1 3 28 28 H 1.08999 * 109.47102 * 239.99753 * 2 1 3 29 29 H 0.96997 * 119.99413 * 180.02562 * 8 7 5 30 30 H 1.08998 * 109.46555 * 294.17571 * 14 13 3 31 31 H 1.09000 * 109.45875 * 54.14635 * 14 13 3 32 32 H 1.08998 * 109.50336 * 179.12288 * 15 14 13 33 33 H 1.09001 * 109.50577 * 299.20248 * 15 14 13 34 34 H 1.09002 * 109.52665 * 62.25172 * 16 15 14 35 35 H 1.09001 * 109.52334 * 182.37792 * 16 15 14 36 36 H 1.08996 * 112.84934 * 288.80660 * 19 17 16 37 37 H 1.08999 * 113.61905 * 334.56541 * 20 19 17 38 38 H 1.09009 * 113.61443 * 105.47409 * 20 19 17 39 39 H 1.09003 * 113.61760 * 270.88267 * 21 20 19 40 40 H 1.09001 * 113.61130 * 139.98341 * 21 20 19 41 41 H 1.08995 * 113.61733 * 220.01893 * 22 21 20 42 42 H 1.09000 * 113.68799 * 89.12617 * 22 21 20 43 43 H 1.09008 * 109.45734 * 305.85643 * 23 13 3 44 44 H 1.08994 * 109.46295 * 65.81955 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5571 1.9986 0.8036 5 6 1.7180 2.0892 -1.3225 6 1 2.5162 2.3996 -1.9804 7 6 0.4042 2.2845 -1.6926 8 7 -0.5378 2.3274 -0.7758 9 14 -0.0377 2.4882 -3.4961 10 1 -0.3286 1.1576 -4.0878 11 1 -1.2363 3.3565 -3.6171 12 1 1.1006 3.1124 -4.2172 13 7 3.4944 1.4476 0.2063 14 6 4.1747 0.6510 -0.8227 15 6 5.6898 0.7970 -0.6640 16 6 6.1002 0.3196 0.7318 17 6 5.3414 1.1326 1.7843 18 1 5.6161 2.1840 1.6997 19 6 5.7005 0.6216 3.1810 20 6 5.4611 1.6542 4.2951 21 6 6.7761 1.1641 4.9238 22 6 7.1987 0.7302 3.5103 23 6 3.8364 0.9768 1.5546 24 1 -0.3634 0.6081 0.8284 25 1 -0.3633 -1.0215 0.1125 26 1 -0.3634 0.4133 -0.9408 27 1 1.8933 -0.5139 0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 -1.4621 2.4645 -1.0363 30 1 3.8974 -0.3974 -0.7127 31 1 3.8774 1.0034 -1.8104 32 1 6.1946 0.1933 -1.4182 33 1 5.9696 1.8432 -0.7883 34 1 5.8560 -0.7370 0.8418 35 1 7.1728 0.4612 0.8645 36 1 5.2765 -0.3595 3.3947 37 1 5.5009 2.6871 3.9491 38 1 4.5813 1.4441 4.9035 39 1 6.6459 0.3317 5.6155 40 1 7.3886 1.9661 5.3358 41 1 7.7217 -0.2257 3.4851 42 1 7.7138 1.5095 2.9487 43 1 3.2933 1.5659 2.2936 44 1 3.5607 -0.0731 1.6535 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693102524.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:33 Heat of formation + Delta-G solvation = 14.812453 kcal Electronic energy + Delta-G solvation = -19804.871063 eV Core-core repulsion = 17143.324986 eV Total energy + Delta-G solvation = -2661.546077 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.54546 -37.70009 -34.75807 -32.05874 -30.57583 -30.00302 -26.76559 -25.59959 -24.93999 -23.47360 -22.08283 -21.56989 -20.04320 -19.30712 -18.43573 -16.12252 -15.62819 -15.22971 -14.58874 -14.25943 -13.88626 -13.71760 -13.32441 -13.21700 -12.87283 -12.49484 -12.35450 -12.18118 -11.95246 -11.54920 -11.28052 -10.86228 -10.78653 -10.72970 -10.65373 -10.48627 -10.35407 -10.28837 -10.14026 -10.05675 -9.85647 -9.70151 -9.46166 -9.25310 -9.03418 -7.77215 -7.01629 -6.06160 -3.90707 3.32072 3.40159 3.43194 4.43633 4.67101 4.71750 4.79940 4.93112 5.09124 5.23757 5.38005 5.45863 5.52790 5.68138 5.70329 5.84110 5.89426 5.92226 6.01122 6.03461 6.08901 6.13920 6.28216 6.31050 6.36428 6.40819 6.48806 6.52391 6.56691 6.63785 6.74320 6.79871 6.86724 6.92441 7.11613 7.34214 7.43738 7.67440 7.88905 8.04379 8.17033 8.38199 8.69160 9.06214 9.61649 11.00680 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.033130 B = 0.005585 C = 0.005214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.948616 B = 5012.364485 C = 5369.290195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.135 4.135 3 C 0.212 3.788 4 H 0.047 0.953 5 C -0.506 4.506 6 H 0.063 0.937 7 C 0.067 3.933 8 N -0.869 5.869 9 Si 0.877 3.123 10 H -0.281 1.281 11 H -0.289 1.289 12 H -0.274 1.274 13 N -0.529 5.529 14 C 0.062 3.938 15 C -0.119 4.119 16 C -0.109 4.109 17 C -0.072 4.072 18 H 0.074 0.926 19 C -0.103 4.103 20 C -0.136 4.136 21 C -0.145 4.145 22 C -0.134 4.134 23 C 0.063 3.937 24 H 0.052 0.948 25 H -0.006 1.006 26 H 0.086 0.914 27 H 0.017 0.983 28 H 0.039 0.961 29 H 0.260 0.740 30 H 0.020 0.980 31 H 0.081 0.919 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.052 0.948 35 H 0.054 0.946 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.063 0.937 39 H 0.075 0.925 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.079 0.921 43 H 0.063 0.937 44 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.745 -4.066 6.829 14.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.174 4.174 3 C 0.105 3.895 4 H 0.065 0.935 5 C -0.545 4.545 6 H 0.082 0.918 7 C -0.135 4.135 8 N -0.507 5.507 9 Si 0.704 3.296 10 H -0.207 1.207 11 H -0.215 1.215 12 H -0.198 1.198 13 N -0.252 5.252 14 C -0.066 4.066 15 C -0.157 4.157 16 C -0.146 4.146 17 C -0.091 4.091 18 H 0.093 0.907 19 C -0.122 4.122 20 C -0.173 4.173 21 C -0.182 4.182 22 C -0.172 4.172 23 C -0.066 4.066 24 H 0.071 0.929 25 H 0.013 0.987 26 H 0.105 0.895 27 H 0.035 0.965 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.038 0.962 31 H 0.099 0.901 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.102 0.898 37 H 0.100 0.900 38 H 0.082 0.918 39 H 0.093 0.907 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.098 0.902 43 H 0.082 0.918 44 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 11.709 -3.531 6.808 13.997 hybrid contribution -0.711 -0.892 -0.855 1.425 sum 10.998 -4.423 5.953 13.265 Atomic orbital electron populations 1.22052 0.95198 0.95579 1.05478 1.22256 0.97446 1.00463 0.97247 1.19423 0.80758 0.91046 0.98261 0.93505 1.20996 0.91638 1.39698 1.02123 0.91845 1.24790 0.96598 0.95206 0.96886 1.70269 1.01118 1.47221 1.32087 0.86845 0.77986 0.77947 0.86803 1.20698 1.21488 1.19848 1.62207 1.11301 1.51811 0.99891 1.21944 0.92021 0.95005 0.97655 1.21643 0.96934 1.01233 0.95842 1.21545 0.98802 0.99099 0.95200 1.21183 0.95693 0.99813 0.92423 0.90746 1.22551 0.95826 0.99044 0.94778 1.22943 0.97272 0.99462 0.97639 1.22821 0.98026 1.00718 0.96632 1.22897 0.96608 1.01169 0.96492 1.21995 0.94177 0.97557 0.92885 0.92904 0.98699 0.89535 0.96477 0.94241 0.93005 0.96200 0.90115 0.92797 0.91687 0.92966 0.92775 0.89819 0.89977 0.91789 0.90662 0.91913 0.92085 0.90222 0.91816 0.96033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.03 8.23 37.16 0.31 -2.72 16 2 C -0.13 -3.16 4.54 -26.73 -0.12 -3.28 16 3 C 0.21 5.25 1.94 -68.87 -0.13 5.11 16 4 H 0.05 1.31 7.89 -51.93 -0.41 0.90 16 5 C -0.51 -13.62 7.81 -34.44 -0.27 -13.89 16 6 H 0.06 1.74 6.82 -52.49 -0.36 1.38 16 7 C 0.07 1.80 3.73 -17.81 -0.07 1.73 16 8 N -0.87 -23.90 9.74 55.43 0.54 -23.36 16 9 Si 0.88 20.85 29.59 -169.99 -5.03 15.82 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 13 N -0.53 -11.34 4.62 -228.08 -1.05 -12.40 16 14 C 0.06 1.21 4.63 -3.83 -0.02 1.20 16 15 C -0.12 -1.88 6.09 -26.65 -0.16 -2.04 16 16 C -0.11 -1.55 5.04 -26.61 -0.13 -1.68 16 17 C -0.07 -1.08 2.10 -90.54 -0.19 -1.27 16 18 H 0.07 1.18 7.94 -51.93 -0.41 0.77 16 19 C -0.10 -1.29 3.13 -89.81 -0.28 -1.57 16 20 C -0.14 -1.60 7.63 -25.92 -0.20 -1.79 16 21 C -0.14 -1.46 8.08 -25.92 -0.21 -1.67 16 22 C -0.13 -1.44 6.73 -25.92 -0.17 -1.61 16 23 C 0.06 1.15 4.37 -3.83 -0.02 1.13 16 24 H 0.05 1.33 7.58 -51.93 -0.39 0.93 16 25 H -0.01 -0.13 8.14 -51.93 -0.42 -0.56 16 26 H 0.09 2.27 4.75 -51.93 -0.25 2.02 16 27 H 0.02 0.37 6.36 -51.93 -0.33 0.04 16 28 H 0.04 0.93 6.98 -51.93 -0.36 0.57 16 29 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 30 H 0.02 0.40 6.79 -51.93 -0.35 0.04 16 31 H 0.08 1.72 6.40 -51.93 -0.33 1.39 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.05 0.68 7.55 -51.93 -0.39 0.29 16 36 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.08 1.00 7.96 -51.93 -0.41 0.58 16 38 H 0.06 0.75 8.14 -51.92 -0.42 0.33 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.08 0.85 8.10 -51.93 -0.42 0.43 16 43 H 0.06 1.21 8.05 -51.92 -0.42 0.80 16 44 H 0.02 0.41 6.60 -51.93 -0.34 0.07 16 LS Contribution 320.70 15.07 4.83 4.83 Total: -1.00 -26.71 320.70 -10.51 -37.21 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -8.13 Total: 0.26 kcal Atomic # 6 Polarization: -20.69 SS G_CDS: -1.67 Total: -22.36 kcal Atomic # 7 Polarization: -35.24 SS G_CDS: -0.51 Total: -35.76 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.03 Total: 15.82 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -26.71 -10.51 -37.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693102524.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.025 kcal (2) G-P(sol) polarization free energy of solvation -26.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds