Wall clock time and date at job start Mon Mar 30 2020 07:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46909 * 2 1 4 4 H 1.09005 * 109.47169 * 51.43550 * 3 2 1 5 5 C 1.50693 * 109.47340 * 291.43250 * 3 2 1 6 6 H 1.08001 * 120.00371 * 244.56577 * 5 3 2 7 7 C 1.37887 * 119.99966 * 64.56543 * 5 3 2 8 8 N 1.31517 * 119.99724 * 22.14902 * 7 5 3 9 9 Si 1.86799 * 119.99934 * 202.14991 * 7 5 3 10 10 H 1.48500 * 109.47055 * 90.00099 * 9 7 5 11 11 H 1.48498 * 109.46883 * 209.99987 * 9 7 5 12 12 H 1.48499 * 109.47071 * 330.00132 * 9 7 5 13 13 N 1.46896 * 109.46877 * 171.43448 * 3 2 1 14 14 C 1.46847 * 111.00109 * 57.22112 * 13 3 2 15 15 C 1.53042 * 109.52398 * 174.15811 * 14 13 3 16 16 C 1.53121 * 109.27430 * 59.18309 * 15 14 13 17 17 C 1.53119 * 109.16196 * 302.34221 * 16 15 14 18 18 H 1.09003 * 109.50490 * 297.67726 * 17 16 15 19 19 C 1.53002 * 109.50464 * 177.59674 * 17 16 15 20 20 C 1.53777 * 113.61285 * 157.49806 * 19 17 16 21 21 C 1.53782 * 87.07952 * 220.01929 * 20 19 17 22 22 C 1.53781 * 87.08288 * 25.43293 * 21 20 19 23 23 C 1.46855 * 111.00202 * 293.01450 * 13 3 2 24 24 H 1.08999 * 109.47326 * 306.28129 * 1 2 3 25 25 H 1.09001 * 109.47042 * 186.28467 * 1 2 3 26 26 H 1.08997 * 109.47306 * 66.28401 * 1 2 3 27 27 H 1.09003 * 109.46843 * 120.00222 * 2 1 3 28 28 H 1.08999 * 109.47102 * 239.99753 * 2 1 3 29 29 H 0.96997 * 119.99413 * 180.02562 * 8 7 5 30 30 H 1.08998 * 109.46555 * 294.17571 * 14 13 3 31 31 H 1.09000 * 109.45875 * 54.14635 * 14 13 3 32 32 H 1.08998 * 109.50336 * 179.12288 * 15 14 13 33 33 H 1.09001 * 109.50577 * 299.20248 * 15 14 13 34 34 H 1.09002 * 109.52665 * 62.25172 * 16 15 14 35 35 H 1.09001 * 109.52334 * 182.37792 * 16 15 14 36 36 H 1.08996 * 112.84934 * 288.80660 * 19 17 16 37 37 H 1.08999 * 113.61905 * 334.56541 * 20 19 17 38 38 H 1.09009 * 113.61443 * 105.47409 * 20 19 17 39 39 H 1.09003 * 113.61760 * 270.88267 * 21 20 19 40 40 H 1.09001 * 113.61130 * 139.98341 * 21 20 19 41 41 H 1.08995 * 113.61733 * 220.01893 * 22 21 20 42 42 H 1.09000 * 113.68799 * 89.12617 * 22 21 20 43 43 H 1.09008 * 109.45734 * 305.85643 * 23 13 3 44 44 H 1.08994 * 109.46295 * 65.81955 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5571 1.9986 0.8036 5 6 1.7180 2.0892 -1.3225 6 1 2.5162 2.3996 -1.9804 7 6 0.4042 2.2845 -1.6926 8 7 -0.5378 2.3274 -0.7758 9 14 -0.0377 2.4882 -3.4961 10 1 -0.3286 1.1576 -4.0878 11 1 -1.2363 3.3565 -3.6171 12 1 1.1006 3.1124 -4.2172 13 7 3.4944 1.4476 0.2063 14 6 4.1747 0.6510 -0.8227 15 6 5.6898 0.7970 -0.6640 16 6 6.1002 0.3196 0.7318 17 6 5.3414 1.1326 1.7843 18 1 5.6161 2.1840 1.6997 19 6 5.7005 0.6216 3.1810 20 6 5.4611 1.6542 4.2951 21 6 6.7761 1.1641 4.9238 22 6 7.1987 0.7302 3.5103 23 6 3.8364 0.9768 1.5546 24 1 -0.3634 0.6081 0.8284 25 1 -0.3633 -1.0215 0.1125 26 1 -0.3634 0.4133 -0.9408 27 1 1.8933 -0.5139 0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 -1.4621 2.4645 -1.0363 30 1 3.8974 -0.3974 -0.7127 31 1 3.8774 1.0034 -1.8104 32 1 6.1946 0.1933 -1.4182 33 1 5.9696 1.8432 -0.7883 34 1 5.8560 -0.7370 0.8418 35 1 7.1728 0.4612 0.8645 36 1 5.2765 -0.3595 3.3947 37 1 5.5009 2.6871 3.9491 38 1 4.5813 1.4441 4.9035 39 1 6.6459 0.3317 5.6155 40 1 7.3886 1.9661 5.3358 41 1 7.7217 -0.2257 3.4851 42 1 7.7138 1.5095 2.9487 43 1 3.2933 1.5659 2.2936 44 1 3.5607 -0.0731 1.6535 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693102524.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:32 Heat of formation + Delta-G solvation = 1.606397 kcal Electronic energy + Delta-G solvation = -19805.443721 eV Core-core repulsion = 17143.324986 eV Total energy + Delta-G solvation = -2662.118734 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.77391 -39.07056 -36.45049 -33.83584 -31.97359 -31.80057 -28.66024 -26.60240 -26.08420 -25.18849 -23.79001 -22.94122 -21.63569 -20.35194 -19.89335 -18.14558 -17.13912 -16.32781 -16.11872 -15.71800 -15.56266 -15.26592 -14.91009 -14.77305 -14.28942 -14.06422 -13.72771 -13.24631 -13.24422 -13.04997 -12.78125 -12.66324 -12.55832 -12.39280 -12.14384 -12.05623 -11.92799 -11.65073 -11.60215 -11.43981 -11.26797 -11.24748 -11.11568 -10.67567 -10.58471 -9.84762 -8.74277 -8.13734 -6.04348 1.41212 1.44841 1.52628 2.45055 3.12967 3.37492 3.69370 3.85004 3.92172 4.02475 4.16549 4.23696 4.30512 4.43768 4.50847 4.56408 4.63808 4.67609 4.78557 4.81962 4.87714 4.94067 4.96863 4.99530 5.05166 5.09568 5.14571 5.14984 5.18156 5.20697 5.30878 5.37149 5.42107 5.44599 5.50750 5.59325 5.74299 5.75770 5.82157 6.00598 6.22562 6.57098 6.85190 6.97626 7.51182 8.92692 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.033130 B = 0.005585 C = 0.005214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.948616 B = 5012.364485 C = 5369.290195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.125 4.125 3 C 0.218 3.782 4 H 0.006 0.994 5 C -0.524 4.524 6 H 0.053 0.947 7 C 0.030 3.970 8 N -0.890 5.890 9 Si 0.935 3.065 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.272 1.272 13 N -0.543 5.543 14 C 0.064 3.936 15 C -0.112 4.112 16 C -0.103 4.103 17 C -0.064 4.064 18 H 0.064 0.936 19 C -0.106 4.106 20 C -0.144 4.144 21 C -0.135 4.135 22 C -0.126 4.126 23 C 0.066 3.934 24 H 0.034 0.966 25 H 0.017 0.983 26 H 0.067 0.933 27 H 0.029 0.971 28 H 0.038 0.962 29 H 0.261 0.739 30 H 0.016 0.984 31 H 0.057 0.943 32 H 0.077 0.923 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.058 0.942 39 H 0.085 0.915 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.082 0.918 43 H 0.047 0.953 44 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.635 -5.090 6.887 16.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.164 4.164 3 C 0.111 3.889 4 H 0.024 0.976 5 C -0.562 4.562 6 H 0.071 0.929 7 C -0.170 4.170 8 N -0.529 5.529 9 Si 0.761 3.239 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.197 1.197 13 N -0.266 5.266 14 C -0.064 4.064 15 C -0.150 4.150 16 C -0.140 4.140 17 C -0.082 4.082 18 H 0.083 0.917 19 C -0.125 4.125 20 C -0.181 4.181 21 C -0.172 4.172 22 C -0.163 4.163 23 C -0.063 4.063 24 H 0.053 0.947 25 H 0.036 0.964 26 H 0.085 0.915 27 H 0.048 0.952 28 H 0.056 0.944 29 H 0.071 0.929 30 H 0.034 0.966 31 H 0.075 0.925 32 H 0.096 0.904 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.092 0.908 38 H 0.077 0.923 39 H 0.103 0.897 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.101 0.899 43 H 0.066 0.934 44 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 13.613 -4.558 6.869 15.915 hybrid contribution -1.338 -0.539 -0.846 1.672 sum 12.275 -5.097 6.023 14.592 Atomic orbital electron populations 1.21882 0.95570 0.96390 1.03604 1.22101 0.96980 0.99730 0.97622 1.19149 0.82870 0.91054 0.95857 0.97602 1.21174 0.91685 1.40431 1.02956 0.92928 1.25402 0.96460 0.94931 1.00232 1.70367 1.01308 1.47612 1.33593 0.85927 0.77577 0.78001 0.82370 1.20090 1.21200 1.19706 1.62129 1.09424 1.53139 1.01881 1.21940 0.94546 0.94112 0.95814 1.21606 0.93942 1.01570 0.97895 1.21525 1.00193 0.98888 0.93438 1.21107 0.92868 0.99688 0.94578 0.91727 1.22549 0.97777 0.98998 0.93127 1.22981 0.98409 0.98942 0.97780 1.22790 0.96578 1.01243 0.96599 1.22864 0.94892 1.01993 0.96550 1.22028 0.96816 0.96640 0.90788 0.94692 0.96382 0.91455 0.95235 0.94365 0.92904 0.96557 0.92486 0.90413 0.92221 0.92580 0.90019 0.89859 0.90762 0.92284 0.89654 0.90850 0.90723 0.89944 0.93446 0.96456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.69 8.23 71.98 0.59 -5.10 16 2 C -0.12 -5.93 4.54 30.60 0.14 -5.79 16 3 C 0.22 11.17 1.94 44.17 0.09 11.26 16 4 H 0.01 0.35 7.89 -2.38 -0.02 0.34 16 5 C -0.52 -28.94 7.81 25.60 0.20 -28.74 16 6 H 0.05 2.96 6.82 -2.91 -0.02 2.94 16 7 C 0.03 1.64 3.73 84.66 0.32 1.96 16 8 N -0.89 -50.03 9.74 21.45 0.21 -49.83 16 9 Si 0.94 43.19 29.59 68.60 2.03 45.22 16 10 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 11 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 12 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 13 N -0.54 -23.75 4.62 -875.50 -4.04 -27.79 16 14 C 0.06 2.50 4.63 86.33 0.40 2.90 16 15 C -0.11 -3.36 6.09 30.65 0.19 -3.18 16 16 C -0.10 -2.66 5.04 30.67 0.15 -2.50 16 17 C -0.06 -1.82 2.10 -10.74 -0.02 -1.85 16 18 H 0.06 1.99 7.94 -2.39 -0.02 1.97 16 19 C -0.11 -2.45 3.13 -10.27 -0.03 -2.48 16 20 C -0.14 -3.21 7.63 31.12 0.24 -2.98 16 21 C -0.13 -2.35 8.08 31.12 0.25 -2.10 16 22 C -0.13 -2.29 6.73 31.12 0.21 -2.08 16 23 C 0.07 2.43 4.37 86.32 0.38 2.81 16 24 H 0.03 1.79 7.58 -2.39 -0.02 1.77 16 25 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.07 3.56 4.75 -2.39 -0.01 3.55 16 27 H 0.03 1.30 6.36 -2.39 -0.02 1.29 16 28 H 0.04 1.80 6.98 -2.39 -0.02 1.79 16 29 H 0.26 14.01 8.31 -92.71 -0.77 13.24 16 30 H 0.02 0.64 6.79 -2.39 -0.02 0.62 16 31 H 0.06 2.47 6.40 -2.39 -0.02 2.45 16 32 H 0.08 1.97 8.14 -2.39 -0.02 1.96 16 33 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.08 1.72 7.55 -2.39 -0.02 1.70 16 36 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.07 1.76 7.96 -2.39 -0.02 1.75 16 38 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 39 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.08 1.48 8.10 -2.39 -0.02 1.46 16 43 H 0.05 1.88 8.05 -2.38 -0.02 1.86 16 44 H 0.02 0.65 6.60 -2.39 -0.02 0.64 16 Total: -1.00 -58.02 320.70 2.22 -55.80 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: 0.93 Total: 14.47 kcal Atomic # 6 Polarization: -40.96 SS G_CDS: 3.09 Total: -37.87 kcal Atomic # 7 Polarization: -73.78 SS G_CDS: -3.84 Total: -77.62 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -58.02 2.22 -55.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693102524.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.403 kcal (2) G-P(sol) polarization free energy of solvation -58.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds