Wall clock time and date at job start Mon Mar 30 2020 07:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47321 * 2 1 4 4 H 1.09004 * 109.46906 * 304.99886 * 3 2 1 5 5 C 1.50701 * 109.47178 * 185.00323 * 3 2 1 6 6 H 1.07994 * 119.99727 * 239.99717 * 5 3 2 7 7 C 1.37872 * 120.00028 * 59.99801 * 5 3 2 8 8 N 1.31515 * 120.00064 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99920 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.46968 * 60.00180 * 9 7 5 11 11 H 1.48507 * 109.47247 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47280 * 300.00102 * 9 7 5 13 13 N 1.46898 * 109.47282 * 64.99836 * 3 2 1 14 14 C 1.46852 * 110.99441 * 65.79368 * 13 3 2 15 15 C 1.53041 * 109.52177 * 185.83916 * 14 13 3 16 16 C 1.53206 * 109.29832 * 300.82357 * 15 14 13 17 17 C 1.53114 * 109.11920 * 57.62704 * 16 15 14 18 18 H 1.09002 * 109.50377 * 62.32749 * 17 16 15 19 19 C 1.53002 * 109.50418 * 182.40625 * 17 16 15 20 20 C 1.53781 * 113.61245 * 279.05888 * 19 17 16 21 21 C 1.53957 * 87.02053 * 220.04752 * 20 19 17 22 22 C 1.53774 * 113.61553 * 181.44979 * 19 17 16 23 23 C 1.46845 * 111.00251 * 190.00084 * 13 3 2 24 24 H 1.08996 * 109.47078 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46803 * 300.00160 * 1 2 3 26 26 H 1.08994 * 109.47048 * 59.99966 * 1 2 3 27 27 H 1.08999 * 109.46803 * 239.99840 * 2 1 3 28 28 H 1.08999 * 109.47038 * 120.00503 * 2 1 3 29 29 H 0.97001 * 119.99998 * 180.02562 * 8 7 5 30 30 H 1.08998 * 109.45960 * 305.85092 * 14 13 3 31 31 H 1.08997 * 109.46503 * 65.83652 * 14 13 3 32 32 H 1.09006 * 109.50367 * 60.75766 * 15 14 13 33 33 H 1.08994 * 109.50320 * 180.84005 * 15 14 13 34 34 H 1.09006 * 109.51006 * 297.75188 * 16 15 14 35 35 H 1.09002 * 109.57569 * 177.54402 * 16 15 14 36 36 H 1.08998 * 112.85006 * 50.25290 * 19 17 16 37 37 H 1.09001 * 113.61612 * 334.56845 * 20 19 17 38 38 H 1.09002 * 113.61379 * 105.46900 * 20 19 17 39 39 H 1.09002 * 113.53011 * 270.81435 * 21 20 19 40 40 H 1.08995 * 113.66500 * 139.93259 * 21 20 19 41 41 H 1.08992 * 113.61629 * 254.52845 * 22 19 17 42 42 H 1.09000 * 113.61536 * 25.43344 * 22 19 17 43 43 H 1.08994 * 109.46233 * 54.14392 * 23 13 3 44 44 H 1.09007 * 109.46116 * 294.17845 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5420 1.4442 -0.1239 6 1 4.1472 1.8888 0.6522 7 6 4.1433 0.8783 -1.2280 8 7 3.4061 0.3374 -2.1734 9 14 6.0049 0.8811 -1.3819 10 1 6.5975 0.1472 -0.2351 11 1 6.3978 0.2165 -2.6505 12 1 6.4995 2.2813 -1.3823 13 7 1.6515 2.0993 1.2552 14 6 2.3294 1.4834 2.4031 15 6 1.7934 2.0926 3.7007 16 6 2.0396 3.6047 3.6896 17 6 1.3641 4.2138 2.4579 18 1 0.2875 4.0534 2.5166 19 6 1.6548 5.7150 2.4058 20 6 0.7454 6.5507 3.3221 21 6 0.6899 7.5885 2.1862 22 6 0.9885 6.4307 1.2190 23 6 1.9125 3.5431 1.1964 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 3.8292 -0.0611 -2.9500 30 1 2.1427 0.4096 2.4018 31 1 3.4017 1.6658 2.3323 32 1 0.7236 1.8989 3.7790 33 1 2.3073 1.6460 4.5518 34 1 3.1115 3.7988 3.6506 35 1 1.6206 4.0495 4.5923 36 1 2.7146 5.9450 2.5152 37 1 -0.2153 6.0800 3.5308 38 1 1.2449 6.9122 4.2210 39 1 1.4857 8.3316 2.2364 40 1 -0.2961 8.0313 2.0460 41 1 1.6838 6.6954 0.4225 42 1 0.0943 5.9271 0.8516 43 1 1.4231 3.9652 0.3187 44 1 2.9868 3.7156 1.1311 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693102534.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:36 Heat of formation + Delta-G solvation = -2.487794 kcal Electronic energy + Delta-G solvation = -19873.911880 eV Core-core repulsion = 17211.615608 eV Total energy + Delta-G solvation = -2662.296272 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.43291 -37.54659 -34.46145 -31.85601 -30.62554 -30.33442 -26.55084 -25.49981 -24.90689 -23.58722 -21.95929 -21.69716 -19.37695 -19.27751 -18.67278 -16.22431 -15.55877 -15.22014 -14.56225 -14.34472 -14.02040 -13.46839 -13.21764 -12.99127 -12.63452 -12.37109 -12.28642 -12.04964 -11.97229 -11.51051 -11.25251 -11.12777 -10.88630 -10.71773 -10.66002 -10.39248 -10.35505 -10.27911 -10.14592 -9.94722 -9.77356 -9.58153 -9.43916 -9.10449 -8.96448 -8.32135 -7.01660 -5.94769 -4.08229 3.28994 3.34225 3.36821 4.41794 4.73540 4.78455 4.86975 5.00305 5.19117 5.28783 5.46172 5.52642 5.54834 5.74484 5.81420 5.91297 5.94916 6.00932 6.10089 6.14711 6.19464 6.25734 6.33881 6.36119 6.40645 6.51407 6.53451 6.57864 6.62273 6.72160 6.75369 6.86543 6.90278 7.05149 7.17709 7.24533 7.43130 7.66636 7.81478 8.05812 8.22600 8.41272 8.56066 9.02829 9.59034 11.03896 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.020376 B = 0.006703 C = 0.006090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.818000 B = 4175.970395 C = 4596.776192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.111 4.111 3 C 0.215 3.785 4 H 0.036 0.964 5 C -0.541 4.541 6 H 0.055 0.945 7 C 0.068 3.932 8 N -0.886 5.886 9 Si 0.885 3.115 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.279 1.279 13 N -0.534 5.534 14 C 0.062 3.938 15 C -0.118 4.118 16 C -0.109 4.109 17 C -0.073 4.073 18 H 0.070 0.930 19 C -0.102 4.102 20 C -0.135 4.135 21 C -0.145 4.145 22 C -0.135 4.135 23 C 0.074 3.926 24 H 0.024 0.976 25 H 0.047 0.953 26 H 0.038 0.962 27 H 0.091 0.909 28 H 0.032 0.968 29 H 0.261 0.739 30 H 0.067 0.933 31 H 0.035 0.965 32 H 0.060 0.940 33 H 0.052 0.948 34 H 0.053 0.947 35 H 0.051 0.949 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.060 0.940 39 H 0.074 0.926 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.082 0.918 43 H 0.061 0.939 44 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.712 8.346 9.118 13.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.149 4.149 3 C 0.108 3.892 4 H 0.054 0.946 5 C -0.580 4.580 6 H 0.073 0.927 7 C -0.134 4.134 8 N -0.525 5.525 9 Si 0.713 3.287 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.204 1.204 13 N -0.258 5.258 14 C -0.067 4.067 15 C -0.155 4.155 16 C -0.146 4.146 17 C -0.092 4.092 18 H 0.089 0.911 19 C -0.121 4.121 20 C -0.172 4.172 21 C -0.182 4.182 22 C -0.173 4.173 23 C -0.055 4.055 24 H 0.043 0.957 25 H 0.066 0.934 26 H 0.057 0.943 27 H 0.109 0.891 28 H 0.051 0.949 29 H 0.071 0.929 30 H 0.085 0.915 31 H 0.053 0.947 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.102 0.898 37 H 0.097 0.903 38 H 0.078 0.922 39 H 0.093 0.907 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.100 0.900 43 H 0.079 0.921 44 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -5.206 8.173 8.981 13.213 hybrid contribution 2.066 0.064 -0.312 2.090 sum -3.141 8.237 8.669 12.364 Atomic orbital electron populations 1.21700 0.98918 0.98308 1.00542 1.21595 0.92209 0.99286 1.01816 1.19244 0.92912 0.91141 0.85880 0.94601 1.21726 0.92992 1.37920 1.05361 0.92676 1.24902 0.97654 0.95140 0.95719 1.69866 1.34778 1.38404 1.09431 0.86773 0.86435 0.78158 0.77315 1.20385 1.21251 1.20442 1.62355 1.57045 1.01713 1.04683 1.21889 0.96533 0.98602 0.89647 1.21651 1.01088 0.95130 0.97678 1.21551 0.99972 0.95850 0.97258 1.21207 1.00196 0.92290 0.95524 0.91141 1.22537 0.98886 0.94457 0.96220 1.22961 1.00130 0.97395 0.96754 1.22853 1.01208 0.96667 0.97470 1.22899 1.01021 0.96656 0.96689 1.21795 0.98425 0.89563 0.95718 0.95715 0.93354 0.94318 0.89081 0.94943 0.92903 0.91479 0.94693 0.92107 0.92944 0.92808 0.93057 0.89824 0.90309 0.92159 0.90716 0.91964 0.91708 0.89978 0.92080 0.95074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 9.80 37.16 0.36 -2.47 16 2 C -0.11 -2.64 5.16 -26.73 -0.14 -2.78 16 3 C 0.21 5.29 1.70 -68.87 -0.12 5.17 16 4 H 0.04 0.99 7.99 -51.93 -0.41 0.57 16 5 C -0.54 -14.49 7.23 -34.44 -0.25 -14.74 16 6 H 0.06 1.49 5.84 -52.49 -0.31 1.19 16 7 C 0.07 1.86 5.29 -17.82 -0.09 1.77 16 8 N -0.89 -25.01 11.29 55.43 0.63 -24.38 16 9 Si 0.89 21.26 29.54 -169.99 -5.02 16.23 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 N -0.53 -11.24 4.06 -228.08 -0.93 -12.16 16 14 C 0.06 1.22 4.78 -3.83 -0.02 1.20 16 15 C -0.12 -1.87 6.09 -26.60 -0.16 -2.04 16 16 C -0.11 -1.61 5.28 -26.57 -0.14 -1.75 16 17 C -0.07 -1.13 2.07 -90.54 -0.19 -1.32 16 18 H 0.07 1.11 7.98 -51.93 -0.41 0.70 16 19 C -0.10 -1.36 3.11 -89.81 -0.28 -1.64 16 20 C -0.13 -1.52 7.63 -25.83 -0.20 -1.72 16 21 C -0.14 -1.56 8.09 -25.82 -0.21 -1.77 16 22 C -0.14 -1.72 6.77 -25.92 -0.18 -1.90 16 23 C 0.07 1.42 4.28 -3.84 -0.02 1.40 16 24 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.05 0.96 7.75 -51.93 -0.40 0.56 16 26 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.09 2.43 5.95 -51.93 -0.31 2.12 16 28 H 0.03 0.76 6.22 -51.93 -0.32 0.44 16 29 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 30 H 0.07 1.38 6.12 -51.93 -0.32 1.06 16 31 H 0.03 0.76 6.37 -51.93 -0.33 0.43 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.08 0.88 7.99 -51.93 -0.41 0.46 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 43 H 0.06 1.21 7.40 -51.93 -0.38 0.83 16 44 H 0.03 0.66 7.29 -51.92 -0.38 0.29 16 LS Contribution 326.39 15.07 4.92 4.92 Total: -1.00 -26.87 326.39 -10.23 -37.09 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -8.20 Total: 0.86 kcal Atomic # 6 Polarization: -20.94 SS G_CDS: -1.62 Total: -22.56 kcal Atomic # 7 Polarization: -36.24 SS G_CDS: -0.30 Total: -36.54 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -26.87 -10.23 -37.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693102534.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.607 kcal (2) G-P(sol) polarization free energy of solvation -26.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds