Wall clock time and date at job start Mon Mar 30 2020 07:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47321 * 2 1 4 4 H 1.09004 * 109.46906 * 304.99886 * 3 2 1 5 5 C 1.50701 * 109.47178 * 185.00323 * 3 2 1 6 6 H 1.07994 * 119.99727 * 239.99717 * 5 3 2 7 7 C 1.37872 * 120.00028 * 59.99801 * 5 3 2 8 8 N 1.31515 * 120.00064 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99920 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.46968 * 60.00180 * 9 7 5 11 11 H 1.48507 * 109.47247 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47280 * 300.00102 * 9 7 5 13 13 N 1.46898 * 109.47282 * 64.99836 * 3 2 1 14 14 C 1.46852 * 110.99441 * 65.79368 * 13 3 2 15 15 C 1.53041 * 109.52177 * 185.83916 * 14 13 3 16 16 C 1.53206 * 109.29832 * 300.82357 * 15 14 13 17 17 C 1.53114 * 109.11920 * 57.62704 * 16 15 14 18 18 H 1.09002 * 109.50377 * 62.32749 * 17 16 15 19 19 C 1.53002 * 109.50418 * 182.40625 * 17 16 15 20 20 C 1.53781 * 113.61245 * 279.05888 * 19 17 16 21 21 C 1.53957 * 87.02053 * 220.04752 * 20 19 17 22 22 C 1.53774 * 113.61553 * 181.44979 * 19 17 16 23 23 C 1.46845 * 111.00251 * 190.00084 * 13 3 2 24 24 H 1.08996 * 109.47078 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46803 * 300.00160 * 1 2 3 26 26 H 1.08994 * 109.47048 * 59.99966 * 1 2 3 27 27 H 1.08999 * 109.46803 * 239.99840 * 2 1 3 28 28 H 1.08999 * 109.47038 * 120.00503 * 2 1 3 29 29 H 0.97001 * 119.99998 * 180.02562 * 8 7 5 30 30 H 1.08998 * 109.45960 * 305.85092 * 14 13 3 31 31 H 1.08997 * 109.46503 * 65.83652 * 14 13 3 32 32 H 1.09006 * 109.50367 * 60.75766 * 15 14 13 33 33 H 1.08994 * 109.50320 * 180.84005 * 15 14 13 34 34 H 1.09006 * 109.51006 * 297.75188 * 16 15 14 35 35 H 1.09002 * 109.57569 * 177.54402 * 16 15 14 36 36 H 1.08998 * 112.85006 * 50.25290 * 19 17 16 37 37 H 1.09001 * 113.61612 * 334.56845 * 20 19 17 38 38 H 1.09002 * 113.61379 * 105.46900 * 20 19 17 39 39 H 1.09002 * 113.53011 * 270.81435 * 21 20 19 40 40 H 1.08995 * 113.66500 * 139.93259 * 21 20 19 41 41 H 1.08992 * 113.61629 * 254.52845 * 22 19 17 42 42 H 1.09000 * 113.61536 * 25.43344 * 22 19 17 43 43 H 1.08994 * 109.46233 * 54.14392 * 23 13 3 44 44 H 1.09007 * 109.46116 * 294.17845 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5420 1.4442 -0.1239 6 1 4.1472 1.8888 0.6522 7 6 4.1433 0.8783 -1.2280 8 7 3.4061 0.3374 -2.1734 9 14 6.0049 0.8811 -1.3819 10 1 6.5975 0.1472 -0.2351 11 1 6.3978 0.2165 -2.6505 12 1 6.4995 2.2813 -1.3823 13 7 1.6515 2.0993 1.2552 14 6 2.3294 1.4834 2.4031 15 6 1.7934 2.0926 3.7007 16 6 2.0396 3.6047 3.6896 17 6 1.3641 4.2138 2.4579 18 1 0.2875 4.0534 2.5166 19 6 1.6548 5.7150 2.4058 20 6 0.7454 6.5507 3.3221 21 6 0.6899 7.5885 2.1862 22 6 0.9885 6.4307 1.2190 23 6 1.9125 3.5431 1.1964 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 3.8292 -0.0611 -2.9500 30 1 2.1427 0.4096 2.4018 31 1 3.4017 1.6658 2.3323 32 1 0.7236 1.8989 3.7790 33 1 2.3073 1.6460 4.5518 34 1 3.1115 3.7988 3.6506 35 1 1.6206 4.0495 4.5923 36 1 2.7146 5.9450 2.5152 37 1 -0.2153 6.0800 3.5308 38 1 1.2449 6.9122 4.2210 39 1 1.4857 8.3316 2.2364 40 1 -0.2961 8.0313 2.0460 41 1 1.6838 6.6954 0.4225 42 1 0.0943 5.9271 0.8516 43 1 1.4231 3.9652 0.3187 44 1 2.9868 3.7156 1.1311 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693102534.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:35 Heat of formation + Delta-G solvation = -15.528583 kcal Electronic energy + Delta-G solvation = -19874.477371 eV Core-core repulsion = 17211.615608 eV Total energy + Delta-G solvation = -2662.861763 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.70221 -38.96141 -36.13244 -33.82451 -32.27439 -31.74667 -28.47519 -26.56727 -26.11134 -25.36825 -23.60977 -23.03547 -20.96379 -20.60970 -20.05719 -18.22253 -17.20764 -16.38586 -16.24871 -15.67371 -15.50123 -15.04722 -14.92200 -14.48281 -14.36988 -13.72593 -13.57552 -13.28034 -13.23851 -13.13104 -12.99470 -12.76067 -12.67617 -12.43411 -12.11686 -11.94553 -11.84999 -11.59374 -11.50319 -11.41175 -11.34291 -11.18588 -11.03795 -10.64775 -10.51807 -10.40024 -8.87208 -8.02636 -6.26066 1.35166 1.35675 1.43218 2.38311 3.13931 3.40173 3.72403 3.86115 3.93391 4.03563 4.19123 4.25249 4.31222 4.53658 4.61942 4.67531 4.73776 4.77305 4.80089 4.91201 4.93191 4.93870 4.97125 5.07442 5.08462 5.09855 5.15098 5.17817 5.19690 5.29353 5.36939 5.41422 5.44388 5.48605 5.53857 5.57976 5.66185 5.77232 5.80690 6.09190 6.23288 6.42405 6.75612 6.96912 7.44637 8.91193 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.020376 B = 0.006703 C = 0.006090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.818000 B = 4175.970395 C = 4596.776192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.105 4.105 3 C 0.220 3.780 4 H -0.001 1.001 5 C -0.550 4.550 6 H 0.046 0.954 7 C 0.021 3.979 8 N -0.911 5.911 9 Si 0.943 3.057 10 H -0.274 1.274 11 H -0.281 1.281 12 H -0.277 1.277 13 N -0.530 5.530 14 C 0.063 3.937 15 C -0.109 4.109 16 C -0.105 4.105 17 C -0.062 4.062 18 H 0.073 0.927 19 C -0.107 4.107 20 C -0.123 4.123 21 C -0.134 4.134 22 C -0.145 4.145 23 C 0.078 3.922 24 H 0.046 0.954 25 H 0.057 0.943 26 H 0.031 0.969 27 H 0.061 0.939 28 H 0.031 0.969 29 H 0.261 0.739 30 H 0.057 0.943 31 H 0.009 0.991 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.045 0.955 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.074 0.926 41 H 0.053 0.947 42 H 0.075 0.925 43 H 0.046 0.954 44 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.218 9.300 11.245 15.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.144 4.144 3 C 0.112 3.888 4 H 0.017 0.983 5 C -0.590 4.590 6 H 0.064 0.936 7 C -0.178 4.178 8 N -0.550 5.550 9 Si 0.770 3.230 10 H -0.199 1.199 11 H -0.206 1.206 12 H -0.203 1.203 13 N -0.253 5.253 14 C -0.065 4.065 15 C -0.147 4.147 16 C -0.143 4.143 17 C -0.081 4.081 18 H 0.091 0.909 19 C -0.126 4.126 20 C -0.161 4.161 21 C -0.172 4.172 22 C -0.182 4.182 23 C -0.051 4.051 24 H 0.065 0.935 25 H 0.076 0.924 26 H 0.050 0.950 27 H 0.079 0.921 28 H 0.050 0.950 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.028 0.972 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.064 0.936 35 H 0.101 0.899 36 H 0.097 0.903 37 H 0.103 0.897 38 H 0.093 0.907 39 H 0.102 0.898 40 H 0.093 0.907 41 H 0.072 0.928 42 H 0.093 0.907 43 H 0.064 0.936 44 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges -5.715 9.135 11.122 15.486 hybrid contribution 2.226 -0.238 -1.012 2.457 sum -3.489 8.897 10.110 13.912 Atomic orbital electron populations 1.21554 0.96241 0.99777 1.00619 1.21435 0.94563 0.98181 1.00215 1.19024 0.91634 0.91572 0.86530 0.98319 1.21949 0.94245 1.37592 1.05169 0.93572 1.25599 1.01696 0.94998 0.95544 1.69993 1.36259 1.38979 1.09773 0.85845 0.81628 0.78117 0.77455 1.19893 1.20646 1.20252 1.62342 1.56770 1.02538 1.03643 1.21921 0.95135 0.98370 0.91106 1.21604 1.01569 0.95796 0.95745 1.21548 0.99644 0.95062 0.98007 1.21119 0.99976 0.93478 0.93540 0.90863 1.22551 0.99256 0.93072 0.97722 1.22910 0.99702 0.96503 0.96946 1.22820 1.02230 0.96106 0.95998 1.22939 1.00509 0.98002 0.96754 1.21808 0.96730 0.88782 0.97746 0.93529 0.92388 0.95009 0.92069 0.95003 0.92924 0.92486 0.97230 0.91241 0.90760 0.93579 0.89936 0.90284 0.89732 0.90672 0.89828 0.90708 0.92817 0.90678 0.93551 0.97849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.10 9.80 71.98 0.71 -4.39 16 2 C -0.11 -5.15 5.16 30.59 0.16 -4.99 16 3 C 0.22 11.26 1.70 44.17 0.08 11.33 16 4 H 0.00 -0.06 7.99 -2.38 -0.02 -0.08 16 5 C -0.55 -30.54 7.23 25.60 0.19 -30.35 16 6 H 0.05 2.60 5.84 -2.91 -0.02 2.58 16 7 C 0.02 1.20 5.29 84.65 0.45 1.65 16 8 N -0.91 -52.89 11.29 21.45 0.24 -52.65 16 9 Si 0.94 44.40 29.54 68.60 2.03 46.42 16 10 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 11 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 12 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 13 N -0.53 -22.69 4.06 -875.51 -3.55 -26.24 16 14 C 0.06 2.49 4.78 86.33 0.41 2.90 16 15 C -0.11 -3.24 6.09 30.68 0.19 -3.05 16 16 C -0.11 -2.86 5.28 30.70 0.16 -2.70 16 17 C -0.06 -1.84 2.07 -10.74 -0.02 -1.86 16 18 H 0.07 2.16 7.98 -2.39 -0.02 2.14 16 19 C -0.11 -2.68 3.11 -10.27 -0.03 -2.72 16 20 C -0.12 -2.38 7.63 31.18 0.24 -2.14 16 21 C -0.13 -2.55 8.09 31.18 0.25 -2.30 16 22 C -0.14 -3.57 6.77 31.12 0.21 -3.36 16 23 C 0.08 3.08 4.28 86.33 0.37 3.45 16 24 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.06 2.24 7.75 -2.39 -0.02 2.22 16 26 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.06 3.37 5.95 -2.39 -0.01 3.35 16 28 H 0.03 1.52 6.22 -2.39 -0.01 1.50 16 29 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 30 H 0.06 2.34 6.12 -2.39 -0.01 2.32 16 31 H 0.01 0.42 6.37 -2.39 -0.02 0.41 16 32 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 33 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.05 1.33 8.14 -2.38 -0.02 1.32 16 35 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.08 1.57 7.99 -2.39 -0.02 1.55 16 38 H 0.07 1.26 8.14 -2.39 -0.02 1.25 16 39 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.07 1.94 8.10 -2.39 -0.02 1.93 16 43 H 0.05 1.93 7.40 -2.39 -0.02 1.91 16 44 H 0.00 0.14 7.29 -2.38 -0.02 0.13 16 Total: -1.00 -59.30 326.39 3.00 -56.30 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: 0.93 Total: 14.70 kcal Atomic # 6 Polarization: -41.88 SS G_CDS: 3.35 Total: -38.53 kcal Atomic # 7 Polarization: -75.58 SS G_CDS: -3.31 Total: -78.89 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.42 kcal Total: -59.30 3.00 -56.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693102534.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.771 kcal (2) G-P(sol) polarization free energy of solvation -59.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds