Wall clock time and date at job start Mon Mar 30 2020 07:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.46763 * 2 1 4 4 H 1.08999 * 109.47246 * 182.16488 * 3 2 1 5 5 C 1.50697 * 109.47439 * 62.16677 * 3 2 1 6 6 H 1.08000 * 120.00231 * 240.00100 * 5 3 2 7 7 C 1.37878 * 120.00291 * 59.99816 * 5 3 2 8 8 N 1.31519 * 119.99879 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00208 * 180.02562 * 7 5 3 10 10 H 1.48492 * 109.47032 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47316 * 119.99758 * 9 7 5 12 12 H 1.48501 * 109.46724 * 239.99452 * 9 7 5 13 13 N 1.46900 * 109.47236 * 302.16244 * 3 2 1 14 14 C 1.46905 * 111.00055 * 172.47430 * 13 3 2 15 15 C 1.46899 * 110.99951 * 296.42786 * 13 3 2 16 16 H 1.08993 * 112.87775 * 29.59587 * 15 13 3 17 17 C 1.53921 * 113.65026 * 258.16454 * 15 13 3 18 18 C 1.53919 * 87.22602 * 220.64949 * 17 15 13 19 19 C 1.53014 * 113.64730 * 160.91022 * 15 13 3 20 20 C 1.53563 * 115.13365 * 22.65093 * 19 15 13 21 21 C 1.55060 * 103.98849 * 206.87260 * 20 19 15 22 22 C 1.54955 * 102.86040 * 37.29749 * 21 20 19 23 23 C 1.53176 * 115.37145 * 256.64343 * 19 15 13 24 24 H 1.08999 * 109.46537 * 174.90424 * 1 2 3 25 25 H 1.08997 * 109.46909 * 294.91097 * 1 2 3 26 26 H 1.08999 * 109.46760 * 54.90711 * 1 2 3 27 27 H 1.08997 * 109.46784 * 119.99754 * 2 1 3 28 28 H 1.08997 * 109.46942 * 240.00125 * 2 1 3 29 29 H 0.96993 * 119.99941 * 180.02562 * 8 7 5 30 30 H 1.09003 * 109.47010 * 51.96109 * 14 13 3 31 31 H 1.09002 * 109.47285 * 171.96520 * 14 13 3 32 32 H 1.09000 * 109.46805 * 291.96608 * 14 13 3 33 33 H 1.09004 * 113.59337 * 335.23790 * 17 15 13 34 34 H 1.09000 * 113.58969 * 106.06442 * 17 15 13 35 35 H 1.09000 * 113.65138 * 270.37524 * 18 17 15 36 36 H 1.09001 * 113.64909 * 139.35279 * 18 17 15 37 37 H 1.08997 * 110.52323 * 325.49930 * 20 19 15 38 38 H 1.09004 * 110.52767 * 88.24987 * 20 19 15 39 39 H 1.09006 * 110.73558 * 278.95757 * 21 20 19 40 40 H 1.08998 * 110.89505 * 155.71022 * 21 20 19 41 41 H 1.09002 * 110.48183 * 203.76601 * 22 21 20 42 42 H 1.09000 * 110.58918 * 81.19097 * 22 21 20 43 43 H 1.08995 * 110.09462 * 248.85955 * 23 19 15 44 44 H 1.09000 * 110.09431 * 10.39630 * 23 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1293 1.4428 -0.0388 5 6 1.5820 2.1373 1.2564 6 1 0.9581 3.0164 1.1906 7 6 1.9594 1.6506 2.4900 8 7 2.7187 0.5798 2.5703 9 14 1.3911 2.5114 4.0474 10 1 0.5526 3.6829 3.6876 11 1 0.5954 1.5674 4.8726 12 1 2.5740 2.9684 4.8201 13 7 1.5081 2.1499 -1.1724 14 6 1.8288 3.5823 -1.1133 15 6 2.0038 1.5504 -2.4186 16 1 2.2085 0.4841 -2.3237 17 6 3.1477 2.3450 -3.0737 18 6 2.4737 2.0556 -4.4268 19 6 1.1651 1.9077 -3.6475 20 6 0.3343 3.1928 -3.5191 21 6 -0.8600 2.9648 -4.4814 22 6 -1.1646 1.4561 -4.3017 23 6 0.2269 0.8038 -4.1453 24 1 -0.3632 -1.0236 -0.0913 25 1 -0.3633 0.4329 0.9320 26 1 -0.3633 0.5908 -0.8409 27 1 1.8933 -0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 2.9838 0.2372 3.4381 30 1 2.8983 3.7085 -0.9448 31 1 1.5509 4.0560 -2.0549 32 1 1.2751 4.0451 -0.2964 33 1 3.1537 3.4018 -2.8065 34 1 4.1247 1.8744 -2.9634 35 1 2.8112 1.1306 -4.8944 36 1 2.4823 2.9048 -5.1101 37 1 -0.0183 3.3192 -2.4956 38 1 0.9181 4.0582 -3.8330 39 1 -0.5730 3.1805 -5.5106 40 1 -1.7177 3.5694 -4.1866 41 1 -1.6737 1.0623 -5.1814 42 1 -1.7661 1.2903 -3.4079 43 1 0.5725 0.4240 -5.1067 44 1 0.1821 -0.0061 -3.4172 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000694304087.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:34 Heat of formation + Delta-G solvation = 9.199464 kcal Electronic energy + Delta-G solvation = -20463.388333 eV Core-core repulsion = 17801.598858 eV Total energy + Delta-G solvation = -2661.789474 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.66220 -37.95178 -35.75911 -34.03256 -32.74755 -29.66684 -28.40562 -27.60119 -27.40835 -25.29203 -23.96381 -22.16313 -21.43225 -20.75565 -18.74391 -18.08450 -17.15406 -16.61246 -16.25662 -15.96955 -15.63567 -15.20874 -14.53017 -14.30811 -14.07219 -13.83485 -13.61901 -13.26187 -13.06030 -12.87504 -12.86544 -12.69964 -12.40001 -12.30713 -12.06917 -11.82115 -11.71175 -11.66608 -11.54024 -11.31869 -11.24998 -11.11940 -10.94138 -10.70281 -10.52997 -10.43361 -8.67311 -8.06784 -6.16440 1.39244 1.41940 1.52503 2.43424 3.21500 3.42120 3.68717 3.73847 3.85336 4.08265 4.22657 4.31683 4.49806 4.56532 4.63813 4.70172 4.77101 4.79945 4.82226 4.87894 4.93397 4.96589 4.98279 5.01238 5.08085 5.11100 5.18892 5.25924 5.30208 5.34721 5.37808 5.48845 5.49480 5.60025 5.60631 5.66018 5.71284 5.78195 5.83023 5.95273 6.33891 6.52876 6.88380 7.00474 7.51869 8.98967 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.028740 B = 0.006787 C = 0.006668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.019649 B = 4124.482868 C = 4198.035706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.103 4.103 3 C 0.226 3.774 4 H -0.050 1.050 5 C -0.503 4.503 6 H 0.058 0.942 7 C 0.012 3.988 8 N -0.922 5.922 9 Si 0.950 3.050 10 H -0.267 1.267 11 H -0.283 1.283 12 H -0.285 1.285 13 N -0.516 5.516 14 C 0.035 3.965 15 C 0.059 3.941 16 H 0.075 0.925 17 C -0.180 4.180 18 C -0.112 4.112 19 C -0.065 4.065 20 C -0.103 4.103 21 C -0.116 4.116 22 C -0.119 4.119 23 C -0.107 4.107 24 H 0.033 0.967 25 H 0.030 0.970 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.022 0.978 29 H 0.258 0.742 30 H 0.000 1.000 31 H 0.089 0.911 32 H 0.050 0.950 33 H 0.087 0.913 34 H 0.048 0.952 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.074 0.926 42 H 0.051 0.949 43 H 0.073 0.927 44 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.573 3.295 -14.685 15.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.141 4.141 3 C 0.119 3.881 4 H -0.032 1.032 5 C -0.541 4.541 6 H 0.076 0.924 7 C -0.186 4.186 8 N -0.562 5.562 9 Si 0.777 3.223 10 H -0.191 1.191 11 H -0.209 1.209 12 H -0.211 1.211 13 N -0.237 5.237 14 C -0.112 4.112 15 C -0.050 4.050 16 H 0.093 0.907 17 C -0.219 4.219 18 C -0.149 4.149 19 C -0.066 4.066 20 C -0.141 4.141 21 C -0.154 4.154 22 C -0.157 4.157 23 C -0.144 4.144 24 H 0.052 0.948 25 H 0.049 0.951 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.040 0.960 29 H 0.067 0.933 30 H 0.018 0.982 31 H 0.107 0.893 32 H 0.069 0.931 33 H 0.105 0.895 34 H 0.066 0.934 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.093 0.907 40 H 0.085 0.915 41 H 0.093 0.907 42 H 0.070 0.930 43 H 0.092 0.908 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.014 3.136 -14.517 15.675 hybrid contribution 1.180 0.086 1.516 1.923 sum -3.834 3.221 -13.001 13.932 Atomic orbital electron populations 1.21279 0.95698 0.98401 1.00808 1.21399 0.96411 0.97639 0.98692 1.18984 0.89613 0.91685 0.87865 1.03225 1.21412 1.30219 1.11624 0.90854 0.92354 1.25632 0.95481 0.95726 1.01809 1.70031 1.37615 1.23845 1.24723 0.85614 0.77932 0.78772 0.79990 1.19104 1.20854 1.21080 1.61951 1.58160 1.02267 1.01363 1.22500 0.97039 0.89991 1.01707 1.23290 0.94472 0.97617 0.89646 0.90720 1.23711 0.98063 1.01446 0.98669 1.22750 0.94944 1.02215 0.95030 1.22041 0.94000 0.96474 0.94063 1.22253 0.96177 0.95286 1.00364 1.22495 0.97580 0.95894 0.99412 1.22328 0.96403 0.95824 1.01133 1.22001 0.95061 0.97017 1.00371 0.94781 0.95123 0.92439 0.92336 0.95975 0.93262 0.98178 0.89312 0.93115 0.89510 0.93356 0.89724 0.89938 0.91046 0.91569 0.90688 0.91534 0.90746 0.93014 0.90816 0.93436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.62 9.50 71.98 0.68 -3.93 16 2 C -0.10 -5.05 5.28 30.60 0.16 -4.89 16 3 C 0.23 11.47 1.73 44.17 0.08 11.54 16 4 H -0.05 -2.92 8.14 -2.39 -0.02 -2.93 16 5 C -0.50 -27.43 6.92 25.60 0.18 -27.25 16 6 H 0.06 3.18 6.20 -2.91 -0.02 3.16 16 7 C 0.01 0.64 5.30 84.65 0.45 1.09 16 8 N -0.92 -53.84 11.30 21.45 0.24 -53.59 16 9 Si 0.95 44.26 29.54 68.60 2.03 46.29 16 10 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 11 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 12 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 13 N -0.52 -21.38 3.07 -874.34 -2.68 -24.06 16 14 C 0.04 1.37 6.59 127.69 0.84 2.21 16 15 C 0.06 2.09 3.24 45.23 0.15 2.24 16 16 H 0.07 2.91 5.95 -2.39 -0.01 2.90 16 17 C -0.18 -5.58 6.91 31.21 0.22 -5.36 16 18 C -0.11 -2.72 7.14 30.91 0.22 -2.50 16 19 C -0.06 -1.78 1.11 -51.92 -0.06 -1.84 16 20 C -0.10 -2.69 4.13 31.49 0.13 -2.56 16 21 C -0.12 -2.48 6.91 31.97 0.22 -2.26 16 22 C -0.12 -2.71 6.85 31.76 0.22 -2.50 16 23 C -0.11 -2.71 6.33 31.15 0.20 -2.52 16 24 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.03 1.45 7.46 -2.39 -0.02 1.44 16 26 H 0.06 2.42 7.38 -2.39 -0.02 2.40 16 27 H 0.06 3.26 6.01 -2.39 -0.01 3.24 16 28 H 0.02 1.00 6.28 -2.39 -0.02 0.99 16 29 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 30 H 0.00 -0.01 7.26 -2.39 -0.02 -0.03 16 31 H 0.09 2.81 3.87 -2.39 -0.01 2.80 16 32 H 0.05 2.10 6.40 -2.39 -0.02 2.08 16 33 H 0.09 2.69 5.38 -2.38 -0.01 2.67 16 34 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.08 1.90 8.11 -2.39 -0.02 1.88 16 36 H 0.08 1.71 8.03 -2.39 -0.02 1.69 16 37 H 0.07 2.24 5.84 -2.39 -0.01 2.22 16 38 H 0.07 1.56 7.27 -2.38 -0.02 1.55 16 39 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 40 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.07 1.60 7.90 -2.39 -0.02 1.58 16 44 H 0.05 1.39 7.90 -2.39 -0.02 1.37 16 Total: -1.00 -59.27 315.73 4.22 -55.05 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: 0.95 Total: 14.84 kcal Atomic # 6 Polarization: -42.21 SS G_CDS: 3.68 Total: -38.53 kcal Atomic # 7 Polarization: -75.21 SS G_CDS: -2.44 Total: -77.65 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -59.27 4.22 -55.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694304087.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.254 kcal (2) G-P(sol) polarization free energy of solvation -59.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds