Wall clock time and date at job start Mon Mar 30 2020 07:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47153 * 2 1 4 4 H 1.08998 * 109.47264 * 303.15897 * 3 2 1 5 5 C 1.50698 * 109.47207 * 183.15173 * 3 2 1 6 6 H 1.08000 * 120.00306 * 240.00045 * 5 3 2 7 7 C 1.37874 * 119.99885 * 60.00043 * 5 3 2 8 8 N 1.31523 * 119.99916 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00074 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46984 * 90.00229 * 9 7 5 11 11 H 1.48507 * 109.47145 * 210.00161 * 9 7 5 12 12 H 1.48499 * 109.47340 * 330.00091 * 9 7 5 13 13 N 1.46903 * 109.47122 * 63.15382 * 3 2 1 14 14 C 1.46900 * 110.99844 * 65.28800 * 13 3 2 15 15 C 1.46898 * 111.00032 * 189.24368 * 13 3 2 16 16 H 1.09000 * 112.93776 * 298.76682 * 15 13 3 17 17 C 1.53924 * 113.65277 * 70.13558 * 15 13 3 18 18 C 1.53917 * 87.22341 * 139.35068 * 17 15 13 19 19 C 1.53018 * 113.65037 * 167.39306 * 15 13 3 20 20 C 1.53175 * 115.36701 * 103.35165 * 19 15 13 21 21 C 1.54469 * 106.28174 * 230.35319 * 20 19 15 22 22 C 1.54958 * 104.33955 * 336.41650 * 21 20 19 23 23 C 1.53557 * 115.12963 * 337.35539 * 19 15 13 24 24 H 1.08998 * 109.47197 * 64.80668 * 1 2 3 25 25 H 1.09000 * 109.47345 * 184.80707 * 1 2 3 26 26 H 1.09002 * 109.47041 * 304.80591 * 1 2 3 27 27 H 1.08994 * 109.46897 * 240.00034 * 2 1 3 28 28 H 1.08999 * 109.47347 * 119.99787 * 2 1 3 29 29 H 0.97000 * 119.99914 * 180.02562 * 8 7 5 30 30 H 1.09001 * 109.46630 * 188.50103 * 14 13 3 31 31 H 1.08999 * 109.47143 * 308.50046 * 14 13 3 32 32 H 1.09000 * 109.47025 * 68.50589 * 14 13 3 33 33 H 1.09001 * 113.58838 * 24.76224 * 17 15 13 34 34 H 1.08996 * 113.66214 * 253.95326 * 17 15 13 35 35 H 1.09001 * 113.64679 * 220.65045 * 18 17 15 36 36 H 1.08996 * 113.65015 * 89.63666 * 18 17 15 37 37 H 1.09001 * 110.09475 * 111.14822 * 20 19 15 38 38 H 1.09002 * 110.09324 * 349.55491 * 20 19 15 39 39 H 1.08999 * 110.47848 * 95.16691 * 21 20 19 40 40 H 1.09002 * 110.47703 * 217.66838 * 21 20 19 41 41 H 1.09003 * 110.73208 * 155.95869 * 22 21 20 42 42 H 1.08998 * 110.73881 * 279.26823 * 22 21 20 43 43 H 1.09010 * 110.52321 * 271.74133 * 23 19 15 44 44 H 1.08999 * 110.53091 * 34.48944 * 23 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6312 1.9724 -0.8603 5 6 3.5450 1.4432 -0.0781 6 1 4.1265 1.8962 0.7112 7 6 4.1795 0.8656 -1.1573 8 7 3.4713 0.3144 -2.1188 9 14 6.0450 0.8671 -1.2545 10 1 6.5756 -0.3576 -0.6033 11 1 6.4665 0.8929 -2.6783 12 1 6.5760 2.0671 -0.5593 13 7 1.6136 2.1126 1.2357 14 6 2.2472 1.5014 2.4117 15 6 1.8929 3.5536 1.1765 16 1 2.9542 3.7764 1.0668 17 6 0.9962 4.3162 0.1848 18 6 0.9103 5.4349 1.2385 19 6 1.2080 4.3577 2.2837 20 6 2.1179 4.7954 3.4356 21 6 1.4021 4.3728 4.7375 22 6 -0.0929 4.2796 4.3406 23 6 -0.0288 3.6915 2.9036 24 1 -0.3633 0.4374 -0.9299 25 1 -0.3634 -1.0240 0.0861 26 1 -0.3633 0.5866 0.8438 27 1 1.8933 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 3.9178 -0.0923 -2.8779 30 1 1.8031 1.9124 3.3184 31 1 2.0926 0.4227 2.3881 32 1 3.3158 1.7157 2.4011 33 1 0.0427 3.8245 -0.0082 34 1 1.5101 4.6157 -0.7285 35 1 -0.0839 5.8720 1.3321 36 1 1.6967 6.1839 1.1461 37 1 2.2524 5.8769 3.4163 38 1 3.0838 4.2960 3.3603 39 1 1.7679 3.4036 5.0765 40 1 1.5446 5.1258 5.5127 41 1 -0.6291 3.6083 5.0115 42 1 -0.5527 5.2678 4.3333 43 1 -0.9260 3.9546 2.3431 44 1 0.0972 2.6094 2.9391 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694304088.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:37 Heat of formation + Delta-G solvation = 7.680301 kcal Electronic energy + Delta-G solvation = -20385.366883 eV Core-core repulsion = 17723.511532 eV Total energy + Delta-G solvation = -2661.855350 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.03634 -36.35033 -34.37073 -32.25154 -30.86217 -28.43142 -27.05415 -26.15952 -25.32313 -23.52932 -21.96875 -21.16581 -20.30833 -18.79038 -17.55161 -16.20547 -15.39963 -15.29918 -14.97588 -14.43891 -13.72010 -13.43073 -13.01901 -12.81255 -12.71140 -12.40339 -12.05227 -11.75551 -11.53807 -11.21723 -11.13477 -10.95825 -10.83266 -10.81478 -10.67175 -10.48323 -10.39154 -10.23402 -10.05076 -9.88150 -9.78890 -9.59528 -9.36632 -9.15830 -8.88547 -8.31622 -7.04895 -5.94388 -4.07154 3.27534 3.34972 3.37537 4.42146 4.80444 4.90780 4.94631 5.28221 5.32878 5.36680 5.46468 5.58931 5.65913 5.79009 5.91282 5.99980 6.06597 6.12613 6.16330 6.21351 6.30206 6.36324 6.39471 6.43081 6.51309 6.55624 6.56827 6.63285 6.67390 6.73090 6.79332 6.91809 7.01839 7.08035 7.18300 7.25509 7.44621 7.68868 7.81739 8.05995 8.23825 8.42560 8.56488 9.04137 9.59944 11.04494 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.023737 B = 0.007453 C = 0.006791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.295991 B = 3755.943029 C = 4121.834179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.111 4.111 3 C 0.214 3.786 4 H 0.039 0.961 5 C -0.538 4.538 6 H 0.054 0.946 7 C 0.068 3.932 8 N -0.886 5.886 9 Si 0.884 3.116 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.277 1.277 13 N -0.522 5.522 14 C 0.033 3.967 15 C 0.084 3.916 16 H 0.061 0.939 17 C -0.123 4.123 18 C -0.132 4.132 19 C -0.074 4.074 20 C -0.112 4.112 21 C -0.122 4.122 22 C -0.126 4.126 23 C -0.093 4.093 24 H 0.036 0.964 25 H 0.023 0.977 26 H 0.050 0.950 27 H 0.090 0.910 28 H 0.032 0.968 29 H 0.260 0.740 30 H 0.044 0.956 31 H 0.058 0.942 32 H 0.022 0.978 33 H 0.081 0.919 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.057 0.943 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.054 0.946 41 H 0.058 0.942 42 H 0.058 0.942 43 H 0.057 0.943 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.664 6.871 9.138 12.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.149 4.149 3 C 0.108 3.892 4 H 0.057 0.943 5 C -0.578 4.578 6 H 0.072 0.928 7 C -0.134 4.134 8 N -0.525 5.525 9 Si 0.712 3.288 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.202 1.202 13 N -0.245 5.245 14 C -0.116 4.116 15 C -0.025 4.025 16 H 0.079 0.921 17 C -0.161 4.161 18 C -0.170 4.170 19 C -0.075 4.075 20 C -0.149 4.149 21 C -0.159 4.159 22 C -0.164 4.164 23 C -0.130 4.130 24 H 0.056 0.944 25 H 0.042 0.958 26 H 0.069 0.931 27 H 0.108 0.892 28 H 0.050 0.950 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.041 0.959 33 H 0.100 0.900 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.073 0.927 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.150 6.708 8.991 12.793 hybrid contribution 2.164 0.048 -0.288 2.184 sum -3.986 6.756 8.703 11.716 Atomic orbital electron populations 1.21717 0.98957 0.98374 1.00540 1.21602 0.92134 0.99400 1.01809 1.19214 0.92503 0.90830 0.86688 0.94337 1.21759 0.92950 1.37173 1.05884 0.92760 1.24899 0.97658 0.95235 0.95653 1.69880 1.34765 1.38074 1.09782 0.86730 0.86604 0.78295 0.77151 1.20785 1.21252 1.20180 1.62629 1.56665 1.00862 1.04377 1.22197 0.96930 0.99422 0.93019 1.22770 0.96564 0.89003 0.94158 0.92113 1.22854 1.00604 0.95997 0.96626 1.22831 1.00691 0.96137 0.97335 1.22018 0.96103 0.96099 0.93233 1.22084 0.98695 1.00021 0.94115 1.22361 0.95756 1.00722 0.97109 1.22610 0.96061 1.00186 0.97514 1.22126 0.95789 1.01700 0.93410 0.94447 0.95795 0.93069 0.89202 0.94954 0.93013 0.93729 0.92307 0.95909 0.90004 0.92229 0.92029 0.90979 0.92428 0.91992 0.91915 0.92697 0.92288 0.92370 0.92472 0.89105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 9.85 37.16 0.37 -2.44 16 2 C -0.11 -2.62 5.11 -26.73 -0.14 -2.75 16 3 C 0.21 5.16 1.67 -68.86 -0.11 5.04 16 4 H 0.04 1.04 7.42 -51.93 -0.39 0.65 16 5 C -0.54 -14.29 7.22 -34.44 -0.25 -14.54 16 6 H 0.05 1.46 5.97 -52.49 -0.31 1.15 16 7 C 0.07 1.84 5.30 -17.82 -0.09 1.75 16 8 N -0.89 -24.94 11.30 55.43 0.63 -24.31 16 9 Si 0.88 21.25 29.54 -169.99 -5.02 16.23 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 13 N -0.52 -10.57 2.93 -227.71 -0.67 -11.24 16 14 C 0.03 0.64 8.20 60.06 0.49 1.13 16 15 C 0.08 1.59 2.26 -67.22 -0.15 1.43 16 16 H 0.06 1.30 7.36 -51.93 -0.38 0.92 16 17 C -0.12 -2.15 6.87 -25.78 -0.18 -2.32 16 18 C -0.13 -1.93 7.14 -26.24 -0.19 -2.12 16 19 C -0.07 -1.13 0.65 -154.11 -0.10 -1.23 16 20 C -0.11 -1.56 6.33 -25.87 -0.16 -1.73 16 21 C -0.12 -1.51 6.71 -24.93 -0.17 -1.68 16 22 C -0.13 -1.54 6.94 -24.42 -0.17 -1.71 16 23 C -0.09 -1.34 5.42 -25.17 -0.14 -1.48 16 24 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.05 0.99 7.56 -51.93 -0.39 0.60 16 27 H 0.09 2.39 5.99 -51.93 -0.31 2.07 16 28 H 0.03 0.75 6.23 -51.93 -0.32 0.43 16 29 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 30 H 0.04 0.76 5.79 -51.93 -0.30 0.46 16 31 H 0.06 1.18 6.04 -51.93 -0.31 0.86 16 32 H 0.02 0.47 6.50 -51.93 -0.34 0.14 16 33 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.06 0.82 8.03 -51.93 -0.42 0.40 16 36 H 0.07 1.00 8.11 -51.93 -0.42 0.58 16 37 H 0.06 0.75 7.91 -51.93 -0.41 0.34 16 38 H 0.06 0.95 7.90 -51.93 -0.41 0.53 16 39 H 0.06 0.80 7.79 -51.93 -0.40 0.39 16 40 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.06 0.82 7.88 -51.92 -0.41 0.41 16 44 H 0.09 1.46 5.41 -51.93 -0.28 1.18 16 LS Contribution 321.95 15.07 4.85 4.85 Total: -1.00 -26.55 321.95 -9.11 -35.65 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -7.91 Total: 1.47 kcal Atomic # 6 Polarization: -21.65 SS G_CDS: -0.99 Total: -22.64 kcal Atomic # 7 Polarization: -35.52 SS G_CDS: -0.04 Total: -35.56 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -26.55 -9.11 -35.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694304088.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.334 kcal (2) G-P(sol) polarization free energy of solvation -26.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds