Wall clock time and date at job start Mon Mar 30 2020 07:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47153 * 2 1 4 4 H 1.08998 * 109.47264 * 303.15897 * 3 2 1 5 5 C 1.50698 * 109.47207 * 183.15173 * 3 2 1 6 6 H 1.08000 * 120.00306 * 240.00045 * 5 3 2 7 7 C 1.37874 * 119.99885 * 60.00043 * 5 3 2 8 8 N 1.31523 * 119.99916 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00074 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46984 * 90.00229 * 9 7 5 11 11 H 1.48507 * 109.47145 * 210.00161 * 9 7 5 12 12 H 1.48499 * 109.47340 * 330.00091 * 9 7 5 13 13 N 1.46903 * 109.47122 * 63.15382 * 3 2 1 14 14 C 1.46900 * 110.99844 * 65.28800 * 13 3 2 15 15 C 1.46898 * 111.00032 * 189.24368 * 13 3 2 16 16 H 1.09000 * 112.93776 * 298.76682 * 15 13 3 17 17 C 1.53924 * 113.65277 * 70.13558 * 15 13 3 18 18 C 1.53917 * 87.22341 * 139.35068 * 17 15 13 19 19 C 1.53018 * 113.65037 * 167.39306 * 15 13 3 20 20 C 1.53175 * 115.36701 * 103.35165 * 19 15 13 21 21 C 1.54469 * 106.28174 * 230.35319 * 20 19 15 22 22 C 1.54958 * 104.33955 * 336.41650 * 21 20 19 23 23 C 1.53557 * 115.12963 * 337.35539 * 19 15 13 24 24 H 1.08998 * 109.47197 * 64.80668 * 1 2 3 25 25 H 1.09000 * 109.47345 * 184.80707 * 1 2 3 26 26 H 1.09002 * 109.47041 * 304.80591 * 1 2 3 27 27 H 1.08994 * 109.46897 * 240.00034 * 2 1 3 28 28 H 1.08999 * 109.47347 * 119.99787 * 2 1 3 29 29 H 0.97000 * 119.99914 * 180.02562 * 8 7 5 30 30 H 1.09001 * 109.46630 * 188.50103 * 14 13 3 31 31 H 1.08999 * 109.47143 * 308.50046 * 14 13 3 32 32 H 1.09000 * 109.47025 * 68.50589 * 14 13 3 33 33 H 1.09001 * 113.58838 * 24.76224 * 17 15 13 34 34 H 1.08996 * 113.66214 * 253.95326 * 17 15 13 35 35 H 1.09001 * 113.64679 * 220.65045 * 18 17 15 36 36 H 1.08996 * 113.65015 * 89.63666 * 18 17 15 37 37 H 1.09001 * 110.09475 * 111.14822 * 20 19 15 38 38 H 1.09002 * 110.09324 * 349.55491 * 20 19 15 39 39 H 1.08999 * 110.47848 * 95.16691 * 21 20 19 40 40 H 1.09002 * 110.47703 * 217.66838 * 21 20 19 41 41 H 1.09003 * 110.73208 * 155.95869 * 22 21 20 42 42 H 1.08998 * 110.73881 * 279.26823 * 22 21 20 43 43 H 1.09010 * 110.52321 * 271.74133 * 23 19 15 44 44 H 1.08999 * 110.53091 * 34.48944 * 23 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6312 1.9724 -0.8603 5 6 3.5450 1.4432 -0.0781 6 1 4.1265 1.8962 0.7112 7 6 4.1795 0.8656 -1.1573 8 7 3.4713 0.3144 -2.1188 9 14 6.0450 0.8671 -1.2545 10 1 6.5756 -0.3576 -0.6033 11 1 6.4665 0.8929 -2.6783 12 1 6.5760 2.0671 -0.5593 13 7 1.6136 2.1126 1.2357 14 6 2.2472 1.5014 2.4117 15 6 1.8929 3.5536 1.1765 16 1 2.9542 3.7764 1.0668 17 6 0.9962 4.3162 0.1848 18 6 0.9103 5.4349 1.2385 19 6 1.2080 4.3577 2.2837 20 6 2.1179 4.7954 3.4356 21 6 1.4021 4.3728 4.7375 22 6 -0.0929 4.2796 4.3406 23 6 -0.0288 3.6915 2.9036 24 1 -0.3633 0.4374 -0.9299 25 1 -0.3634 -1.0240 0.0861 26 1 -0.3633 0.5866 0.8438 27 1 1.8933 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 3.9178 -0.0923 -2.8779 30 1 1.8031 1.9124 3.3184 31 1 2.0926 0.4227 2.3881 32 1 3.3158 1.7157 2.4011 33 1 0.0427 3.8245 -0.0082 34 1 1.5101 4.6157 -0.7285 35 1 -0.0839 5.8720 1.3321 36 1 1.6967 6.1839 1.1461 37 1 2.2524 5.8769 3.4163 38 1 3.0838 4.2960 3.3603 39 1 1.7679 3.4036 5.0765 40 1 1.5446 5.1258 5.5127 41 1 -0.6291 3.6083 5.0115 42 1 -0.5527 5.2678 4.3333 43 1 -0.9260 3.9546 2.3431 44 1 0.0972 2.6094 2.9391 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000694304088.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:36 Heat of formation + Delta-G solvation = -4.555899 kcal Electronic energy + Delta-G solvation = -20385.897484 eV Core-core repulsion = 17723.511532 eV Total energy + Delta-G solvation = -2662.385952 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.38073 -38.02868 -35.64343 -34.22406 -32.64972 -29.52052 -28.81136 -27.61769 -26.81094 -25.35651 -23.54400 -22.52041 -21.41867 -20.61696 -18.96920 -18.13424 -17.07552 -16.54957 -16.40498 -16.15226 -15.24291 -15.04149 -14.57005 -14.36591 -14.08264 -13.73687 -13.51663 -13.36908 -13.17156 -13.06783 -12.79619 -12.62107 -12.45067 -12.27632 -11.98382 -11.84455 -11.79890 -11.71101 -11.59869 -11.40573 -11.23906 -11.14117 -11.04139 -10.72662 -10.48799 -10.39967 -8.86533 -8.00997 -6.23557 1.33262 1.35412 1.43483 2.38726 3.15731 3.46534 3.70876 3.76162 3.93640 4.11673 4.18871 4.40586 4.45712 4.54523 4.67373 4.74280 4.79133 4.82257 4.89804 4.91466 4.94917 4.96646 5.00640 5.01586 5.09979 5.15472 5.16645 5.23199 5.32100 5.35409 5.44300 5.45210 5.52455 5.54406 5.61004 5.67275 5.74518 5.77414 5.86922 6.11189 6.26423 6.45353 6.79665 7.00822 7.46995 8.92609 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.023737 B = 0.007453 C = 0.006791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.295991 B = 3755.943029 C = 4121.834179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.107 4.107 3 C 0.222 3.778 4 H 0.005 0.995 5 C -0.546 4.546 6 H 0.044 0.956 7 C 0.021 3.979 8 N -0.911 5.911 9 Si 0.941 3.059 10 H -0.277 1.277 11 H -0.283 1.283 12 H -0.276 1.276 13 N -0.511 5.511 14 C 0.042 3.958 15 C 0.069 3.931 16 H 0.028 0.972 17 C -0.127 4.127 18 C -0.115 4.115 19 C -0.064 4.064 20 C -0.113 4.113 21 C -0.119 4.119 22 C -0.117 4.117 23 C -0.094 4.094 24 H 0.030 0.970 25 H 0.044 0.956 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.030 0.970 29 H 0.260 0.740 30 H 0.072 0.928 31 H 0.051 0.949 32 H 0.001 0.999 33 H 0.077 0.923 34 H 0.041 0.959 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.042 0.958 39 H 0.057 0.943 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.060 0.940 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.586 7.974 11.043 15.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.145 4.145 3 C 0.115 3.885 4 H 0.023 0.977 5 C -0.586 4.586 6 H 0.062 0.938 7 C -0.178 4.178 8 N -0.550 5.550 9 Si 0.767 3.233 10 H -0.203 1.203 11 H -0.208 1.208 12 H -0.201 1.201 13 N -0.233 5.233 14 C -0.107 4.107 15 C -0.040 4.040 16 H 0.046 0.954 17 C -0.165 4.165 18 C -0.153 4.153 19 C -0.064 4.064 20 C -0.150 4.150 21 C -0.156 4.156 22 C -0.154 4.154 23 C -0.131 4.131 24 H 0.050 0.950 25 H 0.063 0.937 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.048 0.952 29 H 0.069 0.931 30 H 0.091 0.909 31 H 0.070 0.930 32 H 0.019 0.981 33 H 0.096 0.904 34 H 0.060 0.940 35 H 0.103 0.897 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.061 0.939 39 H 0.076 0.924 40 H 0.094 0.906 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.079 0.921 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.073 7.817 10.909 15.171 hybrid contribution 2.464 -0.287 -0.899 2.638 sum -4.610 7.530 10.010 13.347 Atomic orbital electron populations 1.21566 0.96200 0.99856 1.00633 1.21450 0.94556 0.98444 1.00078 1.18952 0.91023 0.91177 0.87341 0.97703 1.22002 0.94433 1.36625 1.05514 0.93793 1.25570 1.01511 0.95206 0.95547 1.70003 1.36130 1.38742 1.10170 0.85831 0.82052 0.78228 0.77146 1.20262 1.20843 1.20143 1.62614 1.56004 1.01646 1.03055 1.22158 0.95712 0.99104 0.93714 1.22887 0.95312 0.88338 0.97471 0.95445 1.22858 0.99747 0.97381 0.96519 1.22770 1.02300 0.95294 0.94903 1.21972 0.96347 0.95147 0.92961 1.22085 0.97607 1.00765 0.94557 1.22356 0.95640 1.01092 0.96550 1.22574 0.96005 1.01106 0.95748 1.22107 0.95207 1.00609 0.95218 0.95037 0.93736 0.92035 0.92327 0.95158 0.93059 0.90926 0.92985 0.98066 0.90391 0.94015 0.89695 0.90166 0.90952 0.93935 0.92436 0.90647 0.91002 0.90860 0.92079 0.90875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.01 9.85 71.98 0.71 -4.30 16 2 C -0.11 -5.13 5.11 30.59 0.16 -4.98 16 3 C 0.22 11.08 1.67 44.17 0.07 11.16 16 4 H 0.01 0.28 7.42 -2.39 -0.02 0.27 16 5 C -0.55 -30.00 7.22 25.60 0.18 -29.81 16 6 H 0.04 2.46 5.97 -2.91 -0.02 2.44 16 7 C 0.02 1.18 5.30 84.65 0.45 1.63 16 8 N -0.91 -52.73 11.30 21.45 0.24 -52.49 16 9 Si 0.94 44.48 29.54 68.60 2.03 46.51 16 10 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 11 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 12 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 13 N -0.51 -20.99 2.93 -874.33 -2.56 -23.55 16 14 C 0.04 1.62 8.20 127.69 1.05 2.67 16 15 C 0.07 2.64 2.26 45.23 0.10 2.74 16 16 H 0.03 1.24 7.36 -2.39 -0.02 1.22 16 17 C -0.13 -4.47 6.87 31.21 0.21 -4.26 16 18 C -0.12 -3.13 7.14 30.91 0.22 -2.91 16 19 C -0.06 -1.84 0.65 -51.93 -0.03 -1.87 16 20 C -0.11 -2.92 6.33 31.15 0.20 -2.72 16 21 C -0.12 -2.56 6.71 31.76 0.21 -2.34 16 22 C -0.12 -2.40 6.94 32.09 0.22 -2.18 16 23 C -0.09 -2.47 5.42 31.61 0.17 -2.30 16 24 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.06 2.32 7.56 -2.39 -0.02 2.30 16 27 H 0.06 3.20 5.99 -2.39 -0.01 3.19 16 28 H 0.03 1.43 6.23 -2.39 -0.01 1.42 16 29 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 30 H 0.07 2.41 5.79 -2.39 -0.01 2.39 16 31 H 0.05 2.08 6.04 -2.39 -0.01 2.06 16 32 H 0.00 0.03 6.50 -2.39 -0.02 0.02 16 33 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 34 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.08 1.96 8.03 -2.39 -0.02 1.95 16 36 H 0.08 2.07 8.11 -2.39 -0.02 2.05 16 37 H 0.07 1.67 7.91 -2.39 -0.02 1.65 16 38 H 0.04 1.26 7.90 -2.39 -0.02 1.25 16 39 H 0.06 1.30 7.79 -2.39 -0.02 1.28 16 40 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.06 1.56 7.88 -2.38 -0.02 1.55 16 44 H 0.07 2.20 5.41 -2.39 -0.01 2.19 16 Total: -1.00 -58.44 321.95 4.58 -53.85 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: 0.94 Total: 15.16 kcal Atomic # 6 Polarization: -43.41 SS G_CDS: 3.93 Total: -39.48 kcal Atomic # 7 Polarization: -73.72 SS G_CDS: -2.32 Total: -76.04 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -58.44 4.58 -53.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694304088.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.299 kcal (2) G-P(sol) polarization free energy of solvation -58.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds