Wall clock time and date at job start Mon Mar 30 2020 07:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47195 * 2 1 4 4 H 1.08997 * 109.47351 * 182.66610 * 3 2 1 5 5 C 1.50702 * 109.46885 * 62.66245 * 3 2 1 6 6 H 1.07994 * 120.00118 * 245.05953 * 5 3 2 7 7 C 1.37880 * 119.99705 * 65.06398 * 5 3 2 8 8 N 1.31513 * 119.99760 * 9.08056 * 7 5 3 9 9 Si 1.86799 * 119.99700 * 189.08056 * 7 5 3 10 10 H 1.48506 * 109.46845 * 179.97438 * 9 7 5 11 11 H 1.48500 * 109.46932 * 299.99870 * 9 7 5 12 12 H 1.48501 * 109.46992 * 59.99969 * 9 7 5 13 13 N 1.46896 * 109.46931 * 302.66615 * 3 2 1 14 14 C 1.46905 * 111.00160 * 173.81239 * 13 3 2 15 15 C 1.46904 * 111.00341 * 297.76417 * 13 3 2 16 16 C 1.53000 * 109.47429 * 164.37945 * 15 13 3 17 17 H 1.08999 * 109.26482 * 55.00151 * 16 15 13 18 18 C 1.52877 * 109.26698 * 295.49720 * 16 15 13 19 19 C 1.53302 * 108.59008 * 184.84265 * 18 16 15 20 20 C 1.52872 * 108.58170 * 74.44397 * 19 18 16 21 21 C 1.52715 * 110.15382 * 305.47850 * 20 19 18 22 22 H 1.08998 * 115.38968 * 232.82343 * 21 20 19 23 23 C 1.53654 * 116.02827 * 90.19978 * 21 20 19 24 24 C 1.52021 * 120.50930 * 21.50091 * 21 20 19 25 25 H 1.08999 * 115.88816 * 209.95295 * 24 21 20 26 26 H 1.09003 * 109.46549 * 304.14324 * 1 2 3 27 27 H 1.09003 * 109.47397 * 64.14218 * 1 2 3 28 28 H 1.09002 * 109.47008 * 184.14709 * 1 2 3 29 29 H 1.09000 * 109.46872 * 239.99985 * 2 1 3 30 30 H 1.08999 * 109.47426 * 120.00235 * 2 1 3 31 31 H 0.96997 * 120.00358 * 358.32176 * 8 7 5 32 32 H 1.09003 * 109.46832 * 59.99695 * 14 13 3 33 33 H 1.08997 * 109.47440 * 179.97438 * 14 13 3 34 34 H 1.09003 * 109.47116 * 300.00053 * 14 13 3 35 35 H 1.08999 * 109.47192 * 284.38189 * 15 13 3 36 36 H 1.08996 * 109.46882 * 44.38116 * 15 13 3 37 37 H 1.09002 * 109.61786 * 304.57642 * 18 16 15 38 38 H 1.09005 * 109.61296 * 64.93278 * 18 16 15 39 39 H 1.09001 * 109.61749 * 194.17405 * 19 18 16 40 40 H 1.09009 * 109.61563 * 314.71388 * 19 18 16 41 41 H 1.09004 * 109.35602 * 65.68907 * 20 19 18 42 42 H 1.08999 * 109.35851 * 185.40950 * 20 19 18 43 43 H 1.09001 * 117.53949 * 355.69240 * 23 21 20 44 44 H 1.08994 * 117.53812 * 140.86338 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1290 1.4429 -0.0478 5 6 1.5923 2.1336 1.2622 6 1 0.9025 2.9627 1.2082 7 6 2.0635 1.7072 2.4858 8 7 3.0341 0.8218 2.5444 9 14 1.3231 2.3873 4.0602 10 1 1.9993 1.7729 5.2309 11 1 1.5078 3.8603 4.0980 12 1 -0.1267 2.0690 4.1032 13 7 1.4985 2.1533 -1.1659 14 6 1.8468 3.5797 -1.1214 15 6 1.9584 1.5380 -2.4181 16 6 1.0926 2.0336 -3.5781 17 1 1.1058 3.1234 -3.5966 18 6 -0.3438 1.5498 -3.3781 19 6 -1.1697 1.9500 -4.6060 20 6 -0.7944 1.0289 -5.7668 21 6 0.7151 1.0602 -5.9966 22 1 1.0280 1.2798 -7.0173 23 6 1.5373 0.0214 -5.2183 24 6 1.6556 1.5025 -4.8871 25 1 2.5816 1.9784 -5.2097 26 1 -0.3632 0.5768 0.8506 27 1 -0.3634 0.4482 -0.9248 28 1 -0.3633 -1.0250 0.0743 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.4019 0.4505 1.7273 32 1 2.9314 3.6889 -1.1182 33 1 1.4340 4.0821 -1.9963 34 1 1.4340 4.0265 -0.2169 35 1 2.9979 1.8124 -2.5974 36 1 1.8769 0.4537 -2.3414 37 1 -0.3528 0.4654 -3.2685 38 1 -0.7642 2.0114 -2.4846 39 1 -2.2314 1.8441 -4.3833 40 1 -0.9505 2.9838 -4.8734 41 1 -1.1033 0.0098 -5.5339 42 1 -1.3024 1.3625 -6.6716 43 1 1.0061 -0.6126 -4.5084 44 1 2.3736 -0.4492 -5.7350 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694416560.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:57 Heat of formation + Delta-G solvation = 4.778451 kcal Electronic energy + Delta-G solvation = -19974.442723 eV Core-core repulsion = 17312.461539 eV Total energy + Delta-G solvation = -2661.981184 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.74333 -37.22922 -33.62648 -32.73821 -31.15118 -30.77437 -26.51996 -25.97020 -24.59448 -23.18952 -22.30678 -21.96541 -20.34140 -18.92175 -18.19566 -16.58703 -16.20541 -15.12031 -14.48700 -14.22434 -13.84000 -13.68779 -13.48409 -13.22773 -13.17234 -12.59711 -12.30889 -11.93122 -11.77466 -11.54701 -11.27540 -11.11228 -10.98211 -10.81496 -10.73881 -10.67505 -10.32535 -10.20472 -10.07483 -9.89946 -9.84089 -9.66887 -9.59529 -9.32447 -8.41407 -8.27439 -7.16388 -6.30110 -3.99099 3.45376 3.48100 3.65866 3.81365 4.53632 4.66578 4.79509 4.91710 5.02808 5.23295 5.27231 5.41839 5.42585 5.48835 5.57885 5.80140 5.81912 5.87457 5.96996 6.00838 6.05651 6.11132 6.22459 6.26483 6.33592 6.35339 6.37459 6.40271 6.46016 6.55064 6.59062 6.72731 6.76905 6.85213 6.98411 7.14803 7.24296 7.43860 7.54743 7.93799 8.10335 8.45898 8.65235 8.92806 9.70204 11.06363 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.036051 B = 0.005558 C = 0.005522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.494605 B = 5036.916884 C = 5069.540628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.112 4.112 3 C 0.205 3.795 4 H -0.014 1.014 5 C -0.579 4.579 6 H 0.056 0.944 7 C 0.020 3.980 8 N -0.913 5.913 9 Si 1.065 2.935 10 H -0.285 1.285 11 H -0.290 1.290 12 H -0.288 1.288 13 N -0.524 5.524 14 C 0.040 3.960 15 C 0.057 3.943 16 C -0.048 4.048 17 H 0.070 0.930 18 C -0.104 4.104 19 C -0.121 4.121 20 C -0.087 4.087 21 C -0.149 4.149 22 H 0.095 0.905 23 C -0.182 4.182 24 C -0.130 4.130 25 H 0.091 0.909 26 H 0.061 0.939 27 H 0.051 0.949 28 H 0.017 0.983 29 H 0.021 0.979 30 H 0.061 0.939 31 H 0.269 0.731 32 H 0.007 0.993 33 H 0.042 0.958 34 H 0.076 0.924 35 H 0.017 0.983 36 H 0.071 0.929 37 H 0.057 0.943 38 H 0.080 0.920 39 H 0.058 0.942 40 H 0.060 0.940 41 H 0.062 0.938 42 H 0.059 0.941 43 H 0.095 0.905 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.352 0.774 -14.471 15.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.150 4.150 3 C 0.098 3.902 4 H 0.003 0.997 5 C -0.618 4.618 6 H 0.075 0.925 7 C -0.184 4.184 8 N -0.550 5.550 9 Si 0.894 3.106 10 H -0.210 1.210 11 H -0.216 1.216 12 H -0.214 1.214 13 N -0.248 5.248 14 C -0.109 4.109 15 C -0.072 4.072 16 C -0.067 4.067 17 H 0.088 0.912 18 C -0.141 4.141 19 C -0.158 4.158 20 C -0.124 4.124 21 C -0.167 4.167 22 H 0.113 0.887 23 C -0.219 4.219 24 C -0.149 4.149 25 H 0.109 0.891 26 H 0.080 0.920 27 H 0.070 0.930 28 H 0.036 0.964 29 H 0.039 0.961 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.026 0.974 33 H 0.061 0.939 34 H 0.094 0.906 35 H 0.035 0.965 36 H 0.090 0.910 37 H 0.076 0.924 38 H 0.098 0.902 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.114 0.886 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.744 0.664 -12.776 14.023 hybrid contribution 1.028 0.059 -1.805 2.078 sum -4.716 0.723 -14.581 15.342 Atomic orbital electron populations 1.21489 0.96328 0.97853 1.02345 1.21602 0.96431 0.98298 0.98689 1.19356 0.91718 0.90746 0.88347 0.99668 1.21835 1.30301 1.18499 0.91148 0.92543 1.25691 0.94902 0.96087 1.01734 1.70798 1.22973 1.29047 1.32153 0.83597 0.75784 0.75580 0.75676 1.21001 1.21648 1.21411 1.61971 1.59469 1.01974 1.01382 1.22212 0.97263 0.90280 1.01142 1.22125 0.94947 0.99795 0.90296 1.20438 0.95234 0.99752 0.91282 0.91192 1.21538 0.94199 1.00853 0.97540 1.21615 0.99368 0.99250 0.95571 1.21027 0.92966 0.99994 0.98440 1.22180 0.93509 1.04863 0.96196 0.88678 1.23069 1.02839 0.92399 1.03588 1.21824 0.99621 0.97057 0.96415 0.89102 0.92005 0.93036 0.96432 0.96065 0.92007 0.91984 0.97400 0.93882 0.90554 0.96514 0.91046 0.92407 0.90172 0.92289 0.92141 0.91923 0.92268 0.88640 0.89502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.62 9.52 37.16 0.35 -2.27 16 2 C -0.11 -2.59 5.07 -26.73 -0.14 -2.73 16 3 C 0.20 5.03 1.38 -68.87 -0.10 4.93 16 4 H -0.01 -0.39 7.50 -51.93 -0.39 -0.78 16 5 C -0.58 -15.56 6.53 -34.44 -0.22 -15.79 16 6 H 0.06 1.53 6.47 -52.49 -0.34 1.20 16 7 C 0.02 0.55 5.19 -17.82 -0.09 0.46 16 8 N -0.91 -27.00 13.01 55.43 0.72 -26.28 16 9 Si 1.06 24.95 29.91 -169.99 -5.08 19.87 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 13 N -0.52 -10.87 3.29 -236.28 -0.78 -11.65 16 14 C 0.04 0.79 9.04 60.07 0.54 1.33 16 15 C 0.06 1.02 4.15 -3.82 -0.02 1.01 16 16 C -0.05 -0.72 2.26 -91.15 -0.21 -0.92 16 17 H 0.07 1.07 6.49 -51.93 -0.34 0.73 16 18 C -0.10 -1.50 4.04 -26.64 -0.11 -1.60 16 19 C -0.12 -1.44 5.93 -26.64 -0.16 -1.60 16 20 C -0.09 -0.95 5.83 -26.94 -0.16 -1.10 16 21 C -0.15 -1.70 6.19 -90.92 -0.56 -2.26 16 22 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 23 C -0.18 -2.21 9.60 -26.78 -0.26 -2.47 16 24 C -0.13 -1.69 5.28 -91.98 -0.49 -2.18 16 25 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 26 H 0.06 1.44 7.17 -51.93 -0.37 1.07 16 27 H 0.05 1.03 6.35 -51.93 -0.33 0.70 16 28 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.02 0.45 6.29 -51.93 -0.33 0.12 16 30 H 0.06 1.59 6.35 -51.93 -0.33 1.26 16 31 H 0.27 7.98 6.05 -40.82 -0.25 7.73 16 32 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 33 H 0.04 0.73 6.46 -51.93 -0.34 0.40 16 34 H 0.08 1.63 6.21 -51.93 -0.32 1.31 16 35 H 0.02 0.31 8.06 -51.93 -0.42 -0.11 16 36 H 0.07 1.34 5.79 -51.93 -0.30 1.04 16 37 H 0.06 0.87 7.00 -51.93 -0.36 0.50 16 38 H 0.08 1.31 7.47 -51.93 -0.39 0.92 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.72 8.04 -51.92 -0.42 0.30 16 41 H 0.06 0.68 8.06 -51.93 -0.42 0.26 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.10 1.24 7.26 -51.93 -0.38 0.86 16 44 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 321.54 15.07 4.85 4.85 Total: -1.00 -27.95 321.54 -9.67 -37.62 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -7.77 Total: 0.79 kcal Atomic # 6 Polarization: -23.59 SS G_CDS: -1.60 Total: -25.19 kcal Atomic # 7 Polarization: -37.88 SS G_CDS: -0.06 Total: -37.93 kcal Atomic # 14 Polarization: 24.95 SS G_CDS: -5.08 Total: 19.87 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -27.95 -9.67 -37.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694416560.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.398 kcal (2) G-P(sol) polarization free energy of solvation -27.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds