Wall clock time and date at job start Mon Mar 30 2020 07:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47195 * 2 1 4 4 H 1.08997 * 109.47351 * 182.66610 * 3 2 1 5 5 C 1.50702 * 109.46885 * 62.66245 * 3 2 1 6 6 H 1.07994 * 120.00118 * 245.05953 * 5 3 2 7 7 C 1.37880 * 119.99705 * 65.06398 * 5 3 2 8 8 N 1.31513 * 119.99760 * 9.08056 * 7 5 3 9 9 Si 1.86799 * 119.99700 * 189.08056 * 7 5 3 10 10 H 1.48506 * 109.46845 * 179.97438 * 9 7 5 11 11 H 1.48500 * 109.46932 * 299.99870 * 9 7 5 12 12 H 1.48501 * 109.46992 * 59.99969 * 9 7 5 13 13 N 1.46896 * 109.46931 * 302.66615 * 3 2 1 14 14 C 1.46905 * 111.00160 * 173.81239 * 13 3 2 15 15 C 1.46904 * 111.00341 * 297.76417 * 13 3 2 16 16 C 1.53000 * 109.47429 * 164.37945 * 15 13 3 17 17 H 1.08999 * 109.26482 * 55.00151 * 16 15 13 18 18 C 1.52877 * 109.26698 * 295.49720 * 16 15 13 19 19 C 1.53302 * 108.59008 * 184.84265 * 18 16 15 20 20 C 1.52872 * 108.58170 * 74.44397 * 19 18 16 21 21 C 1.52715 * 110.15382 * 305.47850 * 20 19 18 22 22 H 1.08998 * 115.38968 * 232.82343 * 21 20 19 23 23 C 1.53654 * 116.02827 * 90.19978 * 21 20 19 24 24 C 1.52021 * 120.50930 * 21.50091 * 21 20 19 25 25 H 1.08999 * 115.88816 * 209.95295 * 24 21 20 26 26 H 1.09003 * 109.46549 * 304.14324 * 1 2 3 27 27 H 1.09003 * 109.47397 * 64.14218 * 1 2 3 28 28 H 1.09002 * 109.47008 * 184.14709 * 1 2 3 29 29 H 1.09000 * 109.46872 * 239.99985 * 2 1 3 30 30 H 1.08999 * 109.47426 * 120.00235 * 2 1 3 31 31 H 0.96997 * 120.00358 * 358.32176 * 8 7 5 32 32 H 1.09003 * 109.46832 * 59.99695 * 14 13 3 33 33 H 1.08997 * 109.47440 * 179.97438 * 14 13 3 34 34 H 1.09003 * 109.47116 * 300.00053 * 14 13 3 35 35 H 1.08999 * 109.47192 * 284.38189 * 15 13 3 36 36 H 1.08996 * 109.46882 * 44.38116 * 15 13 3 37 37 H 1.09002 * 109.61786 * 304.57642 * 18 16 15 38 38 H 1.09005 * 109.61296 * 64.93278 * 18 16 15 39 39 H 1.09001 * 109.61749 * 194.17405 * 19 18 16 40 40 H 1.09009 * 109.61563 * 314.71388 * 19 18 16 41 41 H 1.09004 * 109.35602 * 65.68907 * 20 19 18 42 42 H 1.08999 * 109.35851 * 185.40950 * 20 19 18 43 43 H 1.09001 * 117.53949 * 355.69240 * 23 21 20 44 44 H 1.08994 * 117.53812 * 140.86338 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1290 1.4429 -0.0478 5 6 1.5923 2.1336 1.2622 6 1 0.9025 2.9627 1.2082 7 6 2.0635 1.7072 2.4858 8 7 3.0341 0.8218 2.5444 9 14 1.3231 2.3873 4.0602 10 1 1.9993 1.7729 5.2309 11 1 1.5078 3.8603 4.0980 12 1 -0.1267 2.0690 4.1032 13 7 1.4985 2.1533 -1.1659 14 6 1.8468 3.5797 -1.1214 15 6 1.9584 1.5380 -2.4181 16 6 1.0926 2.0336 -3.5781 17 1 1.1058 3.1234 -3.5966 18 6 -0.3438 1.5498 -3.3781 19 6 -1.1697 1.9500 -4.6060 20 6 -0.7944 1.0289 -5.7668 21 6 0.7151 1.0602 -5.9966 22 1 1.0280 1.2798 -7.0173 23 6 1.5373 0.0214 -5.2183 24 6 1.6556 1.5025 -4.8871 25 1 2.5816 1.9784 -5.2097 26 1 -0.3632 0.5768 0.8506 27 1 -0.3634 0.4482 -0.9248 28 1 -0.3633 -1.0250 0.0743 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.4019 0.4505 1.7273 32 1 2.9314 3.6889 -1.1182 33 1 1.4340 4.0821 -1.9963 34 1 1.4340 4.0265 -0.2169 35 1 2.9979 1.8124 -2.5974 36 1 1.8769 0.4537 -2.3414 37 1 -0.3528 0.4654 -3.2685 38 1 -0.7642 2.0114 -2.4846 39 1 -2.2314 1.8441 -4.3833 40 1 -0.9505 2.9838 -4.8734 41 1 -1.1033 0.0098 -5.5339 42 1 -1.3024 1.3625 -6.6716 43 1 1.0061 -0.6126 -4.5084 44 1 2.3736 -0.4492 -5.7350 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000694416560.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:56 Heat of formation + Delta-G solvation = -8.687352 kcal Electronic energy + Delta-G solvation = -19975.026644 eV Core-core repulsion = 17312.461539 eV Total energy + Delta-G solvation = -2662.565105 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.86748 -38.91296 -35.41587 -33.79979 -33.01298 -32.17920 -28.07460 -27.77746 -26.09973 -24.89071 -23.45418 -23.31862 -21.63938 -20.62918 -19.34159 -18.53081 -17.30164 -16.78625 -15.99318 -15.77539 -15.54254 -15.13990 -14.91686 -14.53463 -14.26934 -14.09558 -13.85301 -13.58395 -13.29799 -12.96979 -12.82568 -12.64781 -12.57613 -12.34177 -12.20365 -11.97894 -11.94808 -11.80904 -11.70962 -11.47041 -11.31305 -11.03490 -10.59283 -10.56918 -10.47455 -10.29204 -8.95660 -8.52945 -6.22050 1.54735 1.62264 1.80578 2.59283 2.82736 3.24248 3.31542 3.71784 3.89098 3.92762 4.13649 4.20435 4.34048 4.38027 4.43016 4.46428 4.52050 4.57971 4.62665 4.67449 4.77065 4.82098 4.86066 4.88390 4.92942 4.97234 5.09266 5.13686 5.14202 5.24725 5.25977 5.30915 5.38706 5.41896 5.47816 5.51251 5.59303 5.60542 5.73496 5.98776 6.11241 6.50744 6.57709 6.80636 7.55475 8.83375 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.036051 B = 0.005558 C = 0.005522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.494605 B = 5036.916884 C = 5069.540628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.105 4.105 3 C 0.209 3.791 4 H -0.056 1.056 5 C -0.579 4.579 6 H 0.053 0.947 7 C -0.029 4.029 8 N -0.939 5.939 9 Si 1.109 2.891 10 H -0.289 1.289 11 H -0.274 1.274 12 H -0.271 1.271 13 N -0.521 5.521 14 C 0.043 3.957 15 C 0.061 3.939 16 C -0.038 4.038 17 H 0.068 0.932 18 C -0.100 4.100 19 C -0.115 4.115 20 C -0.087 4.087 21 C -0.132 4.132 22 H 0.114 0.886 23 C -0.186 4.186 24 C -0.146 4.146 25 H 0.094 0.906 26 H 0.038 0.962 27 H 0.064 0.936 28 H 0.039 0.961 29 H 0.036 0.964 30 H 0.032 0.968 31 H 0.255 0.745 32 H -0.005 1.005 33 H 0.076 0.924 34 H 0.059 0.941 35 H 0.006 0.994 36 H 0.063 0.937 37 H 0.050 0.950 38 H 0.058 0.942 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.080 0.920 43 H 0.085 0.915 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.038 1.207 -16.334 17.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.143 4.143 3 C 0.101 3.899 4 H -0.039 1.039 5 C -0.617 4.617 6 H 0.071 0.929 7 C -0.227 4.227 8 N -0.577 5.577 9 Si 0.932 3.068 10 H -0.215 1.215 11 H -0.199 1.199 12 H -0.197 1.197 13 N -0.245 5.245 14 C -0.105 4.105 15 C -0.067 4.067 16 C -0.057 4.057 17 H 0.087 0.913 18 C -0.138 4.138 19 C -0.153 4.153 20 C -0.124 4.124 21 C -0.151 4.151 22 H 0.132 0.868 23 C -0.223 4.223 24 C -0.165 4.165 25 H 0.113 0.887 26 H 0.057 0.943 27 H 0.083 0.917 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.065 0.935 32 H 0.014 0.986 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.025 0.975 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.099 0.901 43 H 0.103 0.897 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -7.442 1.107 -14.672 16.488 hybrid contribution 1.583 -0.069 -1.290 2.043 sum -5.859 1.039 -15.962 17.035 Atomic orbital electron populations 1.21367 0.94506 0.98989 1.01973 1.21469 0.97857 0.97078 0.97927 1.19198 0.89289 0.91987 0.89418 1.03871 1.22067 1.29379 1.18084 0.92156 0.92929 1.27006 0.94641 0.95860 1.05169 1.70915 1.24650 1.30767 1.31393 0.83029 0.75821 0.75861 0.72123 1.21509 1.19914 1.19677 1.61964 1.58930 1.02257 1.01302 1.22193 0.96534 0.89920 1.01856 1.22170 0.95194 0.99179 0.90157 1.20312 0.94952 0.99555 0.90852 0.91347 1.21462 0.94113 1.00127 0.98097 1.21571 0.99434 0.99641 0.94628 1.21068 0.92690 0.99868 0.98823 1.22302 0.93556 1.02849 0.96344 0.86814 1.23104 1.03537 0.91826 1.03805 1.21757 1.00623 0.97897 0.96173 0.88743 0.94259 0.91659 0.94243 0.94579 0.94974 0.93459 0.98624 0.90572 0.92244 0.97537 0.91872 0.93120 0.92302 0.91289 0.91831 0.91809 0.90133 0.89663 0.88426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.68 9.52 71.98 0.69 -4.00 16 2 C -0.10 -4.96 5.07 30.60 0.15 -4.80 16 3 C 0.21 10.55 1.38 44.17 0.06 10.61 16 4 H -0.06 -3.26 7.50 -2.39 -0.02 -3.27 16 5 C -0.58 -31.71 6.53 25.60 0.17 -31.55 16 6 H 0.05 2.89 6.47 -2.91 -0.02 2.87 16 7 C -0.03 -1.62 5.19 84.66 0.44 -1.18 16 8 N -0.94 -57.29 13.01 21.45 0.28 -57.01 16 9 Si 1.11 50.44 29.91 68.60 2.05 52.49 16 10 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 11 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 12 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 13 N -0.52 -21.80 3.29 -901.46 -2.97 -24.76 16 14 C 0.04 1.73 9.04 127.69 1.15 2.88 16 15 C 0.06 2.19 4.15 86.30 0.36 2.55 16 16 C -0.04 -1.07 2.26 -11.14 -0.03 -1.10 16 17 H 0.07 1.96 6.49 -2.39 -0.02 1.94 16 18 C -0.10 -2.72 4.04 30.65 0.12 -2.60 16 19 C -0.12 -2.42 5.93 30.65 0.18 -2.24 16 20 C -0.09 -1.59 5.83 30.46 0.18 -1.41 16 21 C -0.13 -2.58 6.19 -10.99 -0.07 -2.65 16 22 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 23 C -0.19 -4.12 9.60 30.56 0.29 -3.83 16 24 C -0.15 -3.48 5.28 -11.68 -0.06 -3.54 16 25 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 26 H 0.04 1.81 7.17 -2.39 -0.02 1.80 16 27 H 0.06 2.54 6.35 -2.39 -0.02 2.53 16 28 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.04 1.57 6.29 -2.39 -0.02 1.55 16 30 H 0.03 1.70 6.35 -2.39 -0.02 1.68 16 31 H 0.26 15.89 6.05 -92.71 -0.56 15.33 16 32 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 33 H 0.08 2.51 6.46 -2.39 -0.02 2.49 16 34 H 0.06 2.56 6.21 -2.39 -0.01 2.54 16 35 H 0.01 0.24 8.06 -2.39 -0.02 0.22 16 36 H 0.06 2.36 5.79 -2.39 -0.01 2.35 16 37 H 0.05 1.44 7.00 -2.39 -0.02 1.42 16 38 H 0.06 1.84 7.47 -2.38 -0.02 1.83 16 39 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.06 1.31 8.04 -2.38 -0.02 1.29 16 41 H 0.06 1.18 8.06 -2.38 -0.02 1.16 16 42 H 0.08 1.17 8.14 -2.39 -0.02 1.16 16 43 H 0.08 2.08 7.26 -2.39 -0.02 2.06 16 44 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -61.32 321.54 4.16 -57.16 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: 1.16 Total: 14.97 kcal Atomic # 6 Polarization: -46.48 SS G_CDS: 3.64 Total: -42.84 kcal Atomic # 7 Polarization: -79.08 SS G_CDS: -2.69 Total: -81.77 kcal Atomic # 14 Polarization: 50.44 SS G_CDS: 2.05 Total: 52.49 kcal Total: -61.32 4.16 -57.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694416560.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.469 kcal (2) G-P(sol) polarization free energy of solvation -61.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds