Wall clock time and date at job start Mon Mar 30 2020 07:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47270 * 2 1 4 4 H 1.09000 * 109.46996 * 305.37015 * 3 2 1 5 5 C 1.50692 * 109.47284 * 185.36974 * 3 2 1 6 6 H 1.08005 * 120.00193 * 244.73153 * 5 3 2 7 7 C 1.37875 * 120.00313 * 64.73064 * 5 3 2 8 8 N 1.31516 * 120.00617 * 195.62712 * 7 5 3 9 9 Si 1.86806 * 119.99946 * 15.62431 * 7 5 3 10 10 H 1.48506 * 109.47033 * 90.26184 * 9 7 5 11 11 H 1.48491 * 109.47370 * 210.26174 * 9 7 5 12 12 H 1.48499 * 109.47234 * 330.26504 * 9 7 5 13 13 N 1.46894 * 109.46962 * 65.36801 * 3 2 1 14 14 C 1.46904 * 111.00455 * 252.68387 * 13 3 2 15 15 H 1.08999 * 112.85891 * 30.86902 * 14 13 3 16 16 C 1.53848 * 113.63008 * 259.62698 * 14 13 3 17 17 C 1.53845 * 87.14320 * 270.63026 * 16 14 13 18 18 C 1.53386 * 113.63520 * 162.12029 * 14 13 3 19 19 C 1.52730 * 113.56087 * 334.70767 * 18 14 13 20 20 C 1.53139 * 109.23080 * 172.52570 * 19 18 14 21 21 C 1.52963 * 109.43489 * 57.83445 * 20 19 18 22 22 C 1.52973 * 109.70377 * 298.31323 * 21 20 19 23 23 C 1.52720 * 113.55270 * 203.88107 * 18 14 13 24 24 H 1.09003 * 109.47020 * 175.40257 * 1 2 3 25 25 H 1.09003 * 109.47437 * 55.40409 * 1 2 3 26 26 H 1.08999 * 109.47360 * 295.39946 * 1 2 3 27 27 H 1.09005 * 109.47196 * 120.00035 * 2 1 3 28 28 H 1.09006 * 109.47034 * 240.00168 * 2 1 3 29 29 H 0.96995 * 120.00195 * 179.97438 * 8 7 5 30 30 H 1.00902 * 111.00114 * 128.72839 * 13 3 2 31 31 H 1.09006 * 113.60629 * 25.19130 * 16 14 13 32 32 H 1.08998 * 113.60662 * 156.06618 * 16 14 13 33 33 H 1.09009 * 113.63055 * 89.36544 * 17 16 14 34 34 H 1.08994 * 113.63834 * 220.23476 * 17 16 14 35 35 H 1.08992 * 109.51255 * 292.45463 * 19 18 14 36 36 H 1.09000 * 109.50405 * 52.60007 * 19 18 14 37 37 H 1.08999 * 109.47935 * 297.84347 * 20 19 18 38 38 H 1.09005 * 109.47547 * 177.82648 * 20 19 18 39 39 H 1.09002 * 109.43659 * 178.24052 * 21 20 19 40 40 H 1.09002 * 109.39310 * 58.35843 * 21 20 19 41 41 H 1.08996 * 109.47431 * 301.69513 * 22 21 20 42 42 H 1.08999 * 109.48676 * 181.67946 * 22 21 20 43 43 H 1.08998 * 109.51317 * 307.40421 * 23 18 14 44 44 H 1.09006 * 109.51178 * 67.55639 * 23 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6003 1.9833 -0.8380 5 6 3.5410 1.4446 -0.1330 6 1 4.1542 1.8180 0.6740 7 6 4.1318 0.9698 -1.2847 8 7 5.4150 0.6817 -1.2951 9 14 3.1096 0.7355 -2.8306 10 1 3.1352 1.9836 -3.6349 11 1 3.6722 -0.3812 -3.6316 12 1 1.7086 0.4179 -2.4542 13 7 1.6590 2.0965 1.2589 14 6 0.5821 3.0716 1.0408 15 1 -0.0819 2.7932 0.2225 16 6 1.0740 4.5275 0.9677 17 6 0.8827 4.5878 2.4930 18 6 -0.1572 3.4687 2.3247 19 6 -0.0936 2.4056 3.4195 20 6 -0.6949 2.9726 4.7087 21 6 -2.1348 3.4169 4.4463 22 6 -2.1487 4.5247 3.3914 23 6 -1.5732 3.9853 2.0786 24 1 -0.3633 -1.0244 -0.0824 25 1 -0.3634 0.5835 -0.8460 26 1 -0.3634 0.4408 0.9283 27 1 1.8933 -0.5139 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 5.8305 0.3474 -2.1052 30 1 2.4574 2.5314 1.6966 31 1 2.1138 4.6218 0.6542 32 1 0.4036 5.1876 0.4174 33 1 1.7649 4.2833 3.0564 34 1 0.4606 5.5295 2.8437 35 1 -0.6605 1.5283 3.1085 36 1 0.9451 2.1254 3.5947 37 1 -0.1053 3.8276 5.0395 38 1 -0.6867 2.2044 5.4821 39 1 -2.5732 3.7916 5.3713 40 1 -2.7161 2.5674 4.0876 41 1 -1.5432 5.3627 3.7365 42 1 -3.1732 4.8592 3.2288 43 1 -1.5456 4.7843 1.3378 44 1 -2.1995 3.1711 1.7139 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694467933.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:25 Heat of formation + Delta-G solvation = -7.735559 kcal Electronic energy + Delta-G solvation = -20008.405841 eV Core-core repulsion = 17345.882009 eV Total energy + Delta-G solvation = -2662.523832 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.27483 -36.40390 -34.74611 -32.02161 -30.80487 -30.21959 -28.25495 -26.98265 -24.07580 -22.83012 -22.35731 -22.02640 -20.01069 -19.52370 -17.76496 -16.70179 -15.59621 -15.30786 -14.56906 -14.38640 -13.90707 -13.57048 -13.38017 -13.21159 -12.92039 -12.73048 -12.51381 -12.18572 -11.92642 -11.79782 -11.59116 -11.39874 -11.03412 -10.92335 -10.80015 -10.70888 -10.48769 -10.43134 -10.40971 -9.89517 -9.75210 -9.55569 -9.39685 -9.15688 -9.11745 -8.40832 -7.35021 -6.13620 -4.08584 3.27346 3.37014 3.40948 4.40657 4.65724 4.78020 4.91226 5.12387 5.14784 5.21246 5.22218 5.41884 5.50462 5.57222 5.66024 5.71889 5.77101 5.87359 5.96103 6.02562 6.08270 6.11090 6.13013 6.19473 6.20435 6.30803 6.31402 6.33406 6.38113 6.53534 6.55209 6.66708 6.74256 6.80144 6.86321 6.91540 7.10991 7.16939 7.49585 7.66441 8.05713 8.40081 8.63072 8.95576 9.53199 10.99294 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.032583 B = 0.006114 C = 0.005930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.148791 B = 4578.576569 C = 4720.665826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.107 4.107 3 C 0.193 3.807 4 H 0.007 0.993 5 C -0.535 4.535 6 H 0.074 0.926 7 C 0.079 3.921 8 N -0.891 5.891 9 Si 0.862 3.138 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.250 1.250 13 N -0.657 5.657 14 C 0.085 3.915 15 H 0.072 0.928 16 C -0.177 4.177 17 C -0.126 4.126 18 C -0.073 4.073 19 C -0.086 4.086 20 C -0.121 4.121 21 C -0.117 4.117 22 C -0.115 4.115 23 C -0.093 4.093 24 H 0.031 0.969 25 H 0.035 0.965 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.048 0.952 29 H 0.263 0.737 30 H 0.340 0.660 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.075 0.925 37 H 0.056 0.944 38 H 0.054 0.946 39 H 0.052 0.948 40 H 0.058 0.942 41 H 0.059 0.941 42 H 0.054 0.946 43 H 0.059 0.941 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.035 6.147 7.942 17.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.146 4.146 3 C 0.084 3.916 4 H 0.025 0.975 5 C -0.573 4.573 6 H 0.092 0.908 7 C -0.124 4.124 8 N -0.528 5.528 9 Si 0.689 3.311 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.174 1.174 13 N -0.286 5.286 14 C -0.027 4.027 15 H 0.090 0.910 16 C -0.216 4.216 17 C -0.164 4.164 18 C -0.074 4.074 19 C -0.124 4.124 20 C -0.158 4.158 21 C -0.155 4.155 22 C -0.152 4.152 23 C -0.131 4.131 24 H 0.051 0.949 25 H 0.054 0.946 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.159 0.841 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.093 0.907 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.073 0.927 43 H 0.077 0.923 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.283 5.540 8.016 17.290 hybrid contribution 0.150 0.625 -1.467 1.602 sum -14.133 6.165 6.549 16.752 Atomic orbital electron populations 1.21805 0.98578 0.99146 1.00727 1.21840 0.92743 0.99374 1.00612 1.19450 0.95050 0.90696 0.86389 0.97522 1.21305 0.89622 1.43257 1.03075 0.90799 1.24893 0.94702 0.94020 0.98815 1.69987 1.11442 1.43116 1.28233 0.87211 0.82326 0.77826 0.83708 1.20824 1.21428 1.17408 1.60406 1.11800 1.30070 1.26335 1.22659 0.94650 0.89742 0.95642 0.90972 1.23660 1.01776 0.99724 0.96486 1.22910 0.98979 0.98058 0.96442 1.21741 0.93461 0.95624 0.96553 1.21214 1.01702 0.96892 0.92566 1.21587 0.95655 1.00269 0.98299 1.21494 0.97376 0.98455 0.98137 1.21494 0.99960 0.98149 0.95633 1.21261 0.95026 1.00041 0.96787 0.94942 0.94636 0.92500 0.92450 0.93370 0.92687 0.84060 0.91216 0.91052 0.90341 0.92508 0.92348 0.90660 0.92483 0.92728 0.92913 0.92319 0.92203 0.92686 0.92265 0.92018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.69 9.14 37.16 0.34 -2.35 16 2 C -0.11 -2.35 4.90 -26.73 -0.13 -2.48 16 3 C 0.19 4.42 1.68 -68.87 -0.12 4.30 16 4 H 0.01 0.17 6.08 -51.93 -0.32 -0.15 16 5 C -0.53 -14.55 9.02 -34.45 -0.31 -14.86 16 6 H 0.07 2.17 7.63 -52.48 -0.40 1.77 16 7 C 0.08 2.23 5.33 -17.82 -0.09 2.14 16 8 N -0.89 -26.84 13.96 55.43 0.77 -26.07 16 9 Si 0.86 21.15 25.80 -169.99 -4.39 16.76 16 10 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 12 H -0.25 -5.81 5.50 56.52 0.31 -5.50 16 13 N -0.66 -12.73 4.79 -100.29 -0.48 -13.21 16 14 C 0.09 1.41 2.82 -67.07 -0.19 1.22 16 15 H 0.07 1.27 7.31 -51.93 -0.38 0.89 16 16 C -0.18 -2.73 7.28 -25.85 -0.19 -2.92 16 17 C -0.13 -1.73 6.57 -25.93 -0.17 -1.90 16 18 C -0.07 -1.00 0.74 -154.23 -0.11 -1.11 16 19 C -0.09 -1.18 4.68 -26.80 -0.13 -1.31 16 20 C -0.12 -1.39 5.85 -26.68 -0.16 -1.55 16 21 C -0.12 -1.23 5.86 -26.76 -0.16 -1.38 16 22 C -0.11 -1.21 5.84 -26.67 -0.16 -1.36 16 23 C -0.09 -1.13 5.03 -26.80 -0.13 -1.26 16 24 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.06 1.01 7.53 -51.93 -0.39 0.62 16 27 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 28 H 0.05 1.12 4.97 -51.93 -0.26 0.86 16 29 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 30 H 0.34 6.85 7.17 -39.29 -0.28 6.57 16 31 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.07 1.01 7.61 -51.93 -0.40 0.61 16 33 H 0.08 1.12 7.89 -51.92 -0.41 0.71 16 34 H 0.06 0.71 7.38 -51.93 -0.38 0.32 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.07 1.15 7.41 -51.93 -0.38 0.77 16 37 H 0.06 0.66 7.98 -51.93 -0.41 0.24 16 38 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.63 7.39 -51.93 -0.38 0.25 16 42 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.06 0.70 7.31 -51.93 -0.38 0.32 16 44 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 322.38 15.07 4.86 4.86 Total: -1.00 -27.80 322.38 -9.17 -36.96 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -8.23 Total: 5.53 kcal Atomic # 6 Polarization: -23.13 SS G_CDS: -1.70 Total: -24.83 kcal Atomic # 7 Polarization: -39.57 SS G_CDS: 0.29 Total: -39.28 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.39 Total: 16.76 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -27.80 -9.17 -36.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694467933.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.229 kcal (2) G-P(sol) polarization free energy of solvation -27.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds